Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40320 * 126.68917 * 2 1 4 4 N 1.28750 * 109.34564 * 179.97438 * 3 2 1 5 5 C 1.34392 * 110.12408 * 359.73102 * 4 3 2 6 6 C 1.36706 * 126.68749 * 179.97438 * 2 1 3 7 7 N 1.33030 * 134.78288 * 0.04165 * 6 2 1 8 8 C 1.31560 * 120.66313 * 179.97438 * 7 6 2 9 9 N 1.32090 * 122.46066 * 359.97438 * 8 7 6 10 10 C 1.32788 * 121.27071 * 0.02562 * 9 8 7 11 11 N 1.38187 * 120.76050 * 180.02562 * 10 9 8 12 12 C 1.47958 * 111.00190 * 359.97438 * 11 10 9 13 13 C 1.53927 * 86.18328 * 222.42148 * 12 11 10 14 14 O 1.42908 * 113.73409 * 269.25739 * 13 12 11 15 15 C 1.50696 * 113.73938 * 138.07856 * 13 12 11 16 16 H 1.08004 * 119.99656 * 5.17075 * 15 13 12 17 17 C 1.37877 * 120.00407 * 184.89337 * 15 13 12 18 18 N 1.31516 * 119.99824 * 7.08196 * 17 15 13 19 19 Si 1.86796 * 120.00096 * 187.07856 * 17 15 13 20 20 H 1.48496 * 109.47354 * 94.89655 * 19 17 15 21 21 H 1.48505 * 109.47498 * 214.90074 * 19 17 15 22 22 H 1.48506 * 109.47221 * 334.89879 * 19 17 15 23 23 C 1.47958 * 110.99904 * 260.63745 * 11 10 9 24 24 H 1.09004 * 109.47484 * 270.00123 * 1 2 3 25 25 H 1.09003 * 109.47411 * 30.00842 * 1 2 3 26 26 H 1.09004 * 109.47006 * 150.00704 * 1 2 3 27 27 H 1.07997 * 118.77022 * 179.97438 * 8 7 6 28 28 H 1.08994 * 113.75964 * 108.10022 * 12 11 10 29 29 H 1.09004 * 113.75648 * 336.73863 * 12 11 10 30 30 H 0.96698 * 114.00093 * 162.47043 * 14 13 12 31 31 H 0.96999 * 119.99445 * 180.02562 * 18 17 15 32 32 H 1.09005 * 113.75980 * 23.26799 * 23 11 10 33 33 H 1.09002 * 113.76320 * 251.90289 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3033 1.1252 0.0000 4 7 3.5323 0.7414 0.0005 5 6 3.5975 -0.6009 0.0068 6 6 2.2817 -1.0963 0.0005 7 7 2.0844 -2.4118 0.0004 8 6 3.1040 -3.2432 0.0005 9 7 4.3578 -2.8274 0.0002 10 6 4.6548 -1.5332 0.0003 11 7 5.9702 -1.1099 -0.0006 12 6 6.8981 -2.2624 -0.0009 13 6 7.7175 -1.4714 1.0345 14 8 8.7218 -0.6352 0.4561 15 6 8.2382 -2.3154 2.1692 16 1 8.0949 -3.3858 2.1558 17 6 8.9026 -1.7219 3.2215 18 7 8.9611 -0.4109 3.3067 19 14 9.7195 -2.7801 4.5263 20 1 11.1529 -2.9665 4.1863 21 1 9.6069 -2.1117 5.8476 22 1 9.0479 -4.1034 4.5822 23 6 6.4071 -0.7339 1.3621 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5137 27 1 2.9086 -4.3054 0.0008 28 1 7.4143 -2.4103 -0.9494 29 1 6.4598 -3.1792 0.3936 30 1 9.0530 0.0511 1.0513 31 1 9.4288 0.0066 4.0469 32 1 5.8253 -1.2038 2.1552 33 1 6.5309 0.3398 1.5030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118593309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = 124.793694 kcal Electronic energy + Delta-G solvation = -21234.557379 eV Core-core repulsion = 17912.988473 eV Total energy + Delta-G solvation = -3321.568906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.78097 -41.70406 -40.03383 -36.76519 -35.68829 -34.21765 -33.83056 -32.35407 -29.56947 -28.76298 -27.24645 -27.01070 -25.37437 -24.60807 -22.20630 -20.90122 -19.93365 -19.38685 -19.28614 -17.96281 -17.80668 -17.11574 -16.57002 -16.25968 -16.04257 -15.71907 -15.10551 -14.63098 -14.32219 -14.23747 -14.12778 -13.76632 -13.61005 -13.35116 -13.13482 -12.90615 -12.76862 -12.46814 -12.26019 -12.17033 -12.10484 -11.30319 -10.87431 -10.71790 -10.64142 -10.59007 -10.26394 -9.65977 -8.24624 -6.39266 -1.06003 -0.17032 0.69599 0.81515 1.44444 1.47946 1.56785 2.23501 2.40422 2.46527 2.59944 2.80656 2.93305 3.04591 3.30664 3.54466 3.84607 4.03730 4.18355 4.23085 4.29830 4.44293 4.56278 4.58478 4.72506 4.83671 4.93598 4.99744 5.24145 5.29026 5.71298 5.72469 5.93769 6.02299 6.55431 6.65412 6.85261 7.31126 7.35502 8.82185 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.004977 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.086034 B = 5624.906186 C = 5811.914353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.374 5.374 3 N -0.013 5.013 4 N -0.202 5.202 5 C -0.144 4.144 6 C 0.308 3.692 7 N -0.540 5.540 8 C 0.375 3.625 9 N -0.573 5.573 10 C 0.431 3.569 11 N -0.442 5.442 12 C 0.037 3.963 13 C 0.227 3.773 14 O -0.572 6.572 15 C -0.557 4.557 16 H 0.070 0.930 17 C 0.033 3.967 18 N -0.912 5.912 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.265 1.265 23 C 0.036 3.964 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.261 0.739 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.379 0.621 31 H 0.271 0.729 32 H 0.062 0.938 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.016 -3.785 -4.085 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.170 5.170 3 N 0.005 4.995 4 N -0.081 5.081 5 C -0.277 4.277 6 C 0.057 3.943 7 N -0.264 5.264 8 C 0.083 3.917 9 N -0.297 5.297 10 C 0.178 3.822 11 N -0.160 5.160 12 C -0.090 4.090 13 C 0.186 3.814 14 O -0.380 6.380 15 C -0.595 4.595 16 H 0.088 0.912 17 C -0.168 4.168 18 N -0.551 5.551 19 Si 0.788 3.212 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.090 4.090 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.276 0.724 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.378 -2.879 -5.025 17.372 hybrid contribution 0.482 -0.268 1.617 1.709 sum -15.896 -3.147 -3.408 16.559 Atomic orbital electron populations 1.22561 0.68823 1.07268 1.06100 1.50364 1.09635 1.01139 1.55883 1.81779 0.93657 1.06823 1.17194 1.74491 1.12081 1.10805 1.10731 1.20812 0.95838 0.92043 1.19005 1.19648 0.88284 0.90162 0.96240 1.67692 1.37257 0.98136 1.23281 1.25953 0.80369 1.01562 0.83772 1.68681 1.24872 1.13446 1.22710 1.20655 0.91910 0.87071 0.82545 1.65554 0.98292 1.26196 1.25955 1.24217 0.90654 0.93434 1.00700 1.20064 0.83943 0.87344 0.90056 1.86108 1.58108 1.49383 1.44419 1.21752 1.38301 0.94639 1.04788 0.91164 1.25750 0.95313 0.96208 0.99564 1.69782 1.42280 1.09895 1.33118 0.85478 0.78893 0.79073 0.77795 1.20157 1.20946 1.18961 1.24585 0.98707 1.01538 0.84169 0.88060 0.86154 0.86868 0.72356 0.89405 0.86631 0.77054 0.91920 0.92014 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 11.54 127.77 1.47 2.70 16 2 N -0.37 -9.95 4.09 -366.73 -1.50 -11.45 16 3 N -0.01 -0.44 13.73 37.02 0.51 0.07 16 4 N -0.20 -7.88 12.36 -52.11 -0.64 -8.52 16 5 C -0.14 -5.43 7.21 39.99 0.29 -5.15 16 6 C 0.31 9.60 8.11 134.00 1.09 10.69 16 7 N -0.54 -14.44 10.47 -198.14 -2.07 -16.52 16 8 C 0.37 9.30 12.25 180.87 2.22 11.51 16 9 N -0.57 -18.83 8.35 -196.87 -1.64 -20.47 16 10 C 0.43 16.76 5.93 133.67 0.79 17.55 16 11 N -0.44 -19.21 6.26 -714.64 -4.47 -23.68 16 12 C 0.04 1.58 7.05 86.40 0.61 2.19 16 13 C 0.23 11.22 1.25 -10.91 -0.01 11.21 16 14 O -0.57 -29.88 13.39 -148.98 -2.00 -31.88 16 15 C -0.56 -28.85 8.59 25.60 0.22 -28.63 16 16 H 0.07 3.54 7.82 -2.91 -0.02 3.52 16 17 C 0.03 1.70 5.38 84.65 0.46 2.16 16 18 N -0.91 -48.18 11.76 21.45 0.25 -47.93 16 19 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 20 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.04 1.70 7.25 86.39 0.63 2.33 16 24 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.26 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.12 4.67 6.66 -2.39 -0.02 4.66 16 30 H 0.38 19.95 7.45 -74.06 -0.55 19.40 16 31 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.06 2.96 7.85 -2.38 -0.02 2.95 16 33 H 0.07 3.60 8.14 -2.39 -0.02 3.58 16 Total: -1.00 -64.73 292.69 -1.17 -65.90 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.62 Total: 25.03 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 7.75 Total: 26.56 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -9.58 Total: -128.49 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -2.00 Total: -31.88 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -64.73 -1.17 -65.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118593309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.695 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds