Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47015 * 2 1 4 4 C 1.46496 * 119.99990 * 274.96309 * 3 2 1 5 5 C 1.50693 * 109.47764 * 270.00434 * 4 3 2 6 6 H 1.08009 * 119.99836 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00360 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00082 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46849 * 59.99971 * 9 7 5 11 11 H 1.48501 * 109.47039 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47231 * 300.00275 * 9 7 5 13 13 C 1.34778 * 119.99633 * 94.97094 * 3 2 1 14 14 O 1.21568 * 119.99534 * 185.56196 * 13 3 2 15 15 C 1.47760 * 120.00114 * 5.55777 * 13 3 2 16 16 C 1.39702 * 120.01625 * 55.03793 * 15 13 3 17 17 C 1.37626 * 120.03711 * 180.23216 * 16 15 13 18 18 C 1.39761 * 120.06435 * 359.48847 * 17 16 15 19 19 C 1.43200 * 119.98071 * 180.23581 * 18 17 16 20 20 N 7.19228 * 95.60570 * 102.70028 * 2 1 3 21 21 C 1.39534 * 120.03535 * 0.50811 * 18 17 16 22 22 C 1.38103 * 119.95959 * 359.74829 * 21 18 17 23 23 F 1.35103 * 120.03191 * 179.97438 * 22 21 18 24 24 H 1.09001 * 109.47057 * 300.00216 * 1 2 3 25 25 H 1.08998 * 109.46905 * 59.99879 * 1 2 3 26 26 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47057 * 239.99784 * 2 1 3 28 28 H 1.08998 * 109.46905 * 120.00121 * 2 1 3 29 29 H 1.09003 * 109.47170 * 30.01027 * 4 3 2 30 30 H 1.09007 * 109.46951 * 149.99905 * 4 3 2 31 31 H 0.96993 * 120.00270 * 179.97438 * 8 7 5 32 32 H 1.08001 * 119.98665 * 359.95034 * 16 15 13 33 33 H 1.07994 * 119.96887 * 179.71974 * 17 16 15 34 34 H 1.08000 * 120.02120 * 179.77146 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1590 2.1084 -1.2639 5 6 3.5416 1.8860 -1.8204 6 1 4.2455 1.2653 -1.2858 7 6 3.9085 2.4756 -3.0115 8 7 3.0521 3.2327 -3.6618 9 14 5.6228 2.2004 -3.7009 10 1 5.8336 0.7498 -3.9388 11 1 5.7652 2.9375 -4.9822 12 1 6.6320 2.6946 -2.7301 13 6 2.3383 1.9828 1.1629 14 8 2.6464 3.1588 1.1742 15 6 2.3145 1.2131 2.4239 16 6 3.0573 0.0355 2.5380 17 6 3.0316 -0.6843 3.7108 18 6 2.2710 -0.2329 4.7929 19 6 2.2496 -0.9806 6.0140 20 7 2.2326 -1.5737 6.9828 21 6 1.5281 0.9430 4.6821 22 6 1.5487 1.6635 3.5041 23 9 0.8295 2.8020 3.3951 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.4179 1.7457 -1.9763 30 1 2.0044 3.1733 -1.0896 31 1 3.3103 3.6478 -4.4995 32 1 3.6484 -0.3128 1.7039 33 1 3.6027 -1.5969 3.7962 34 1 0.9375 1.2897 5.5173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120681928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = -20.601640 kcal Electronic energy + Delta-G solvation = -20688.228113 eV Core-core repulsion = 17308.141680 eV Total energy + Delta-G solvation = -3380.086433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.97600 -40.10146 -38.52515 -36.58307 -35.45403 -32.94651 -31.82411 -30.97228 -30.17809 -27.41703 -25.15332 -23.49586 -22.79339 -22.54385 -19.56464 -19.24299 -17.15011 -16.78260 -16.44427 -16.19851 -16.02723 -15.41657 -14.86938 -14.40438 -14.36578 -14.18734 -13.93067 -13.70600 -13.40828 -13.13275 -12.95801 -12.55279 -12.37346 -12.18437 -12.00609 -11.83372 -11.51910 -11.27735 -10.97762 -10.78444 -10.61464 -10.21099 -9.74302 -9.42496 -9.17277 -8.99309 -8.48920 -7.80587 -6.10367 -4.16266 0.17606 0.83043 2.29376 2.41581 3.16474 3.27869 3.33298 3.34450 3.36633 3.45823 3.69552 4.06869 4.37972 4.45680 4.61120 4.65889 4.88372 5.23128 5.24743 5.28033 5.48676 5.57949 5.65648 5.72439 5.81405 5.87090 5.99230 6.17997 6.36382 6.44689 6.95160 7.10405 7.35450 7.41204 7.84608 8.14327 8.22127 8.73581 8.90867 9.49026 10.97704 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.004630 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.702476 B = 6045.801677 C = 6298.956930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.544 3.456 14 O -0.520 6.520 15 C -0.113 4.113 16 C -0.063 4.063 17 C -0.084 4.084 18 C 0.006 3.994 19 C 0.258 3.742 20 N -0.410 5.410 21 C -0.111 4.111 22 C 0.140 3.860 23 F -0.118 7.118 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -9.387 12.057 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.029 4.029 3 N -0.315 5.315 4 C 0.127 3.873 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.329 3.671 14 O -0.397 6.397 15 C -0.118 4.118 16 C -0.082 4.082 17 C -0.105 4.105 18 C 0.002 3.998 19 C -0.057 4.057 20 N -0.085 5.085 21 C -0.133 4.133 22 C 0.119 3.881 23 F -0.096 7.096 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.684 -9.506 13.336 16.786 hybrid contribution 0.789 0.306 -0.881 1.221 sum -2.896 -9.200 12.455 15.753 Atomic orbital electron populations 1.22178 0.96472 1.01536 1.02443 1.21695 0.94067 0.84000 1.03101 1.48221 1.61976 1.13644 1.07639 1.19356 0.97025 0.93232 0.77677 1.21365 0.98437 1.31058 1.06204 0.92376 1.24928 0.97543 0.94795 0.96681 1.69915 1.35074 1.31679 1.16423 0.86553 0.84353 0.78221 0.78261 1.20193 1.21148 1.20129 1.17894 0.79440 0.86797 0.82970 1.90823 1.47714 1.15108 1.86027 1.20699 0.98591 0.96823 0.95694 1.21198 0.97030 0.91789 0.98166 1.21144 0.97797 1.00398 0.91151 1.15685 1.01173 0.94192 0.88734 1.25498 0.93915 0.93524 0.92787 1.81276 1.07851 1.08814 1.10594 1.20995 1.00612 0.94303 0.97362 1.17326 0.93273 0.84102 0.93355 1.91600 1.74897 1.46788 1.96298 0.93145 0.91875 0.92017 0.89683 0.90916 0.94598 0.93561 0.92540 0.82854 0.83715 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.10 1.38 5.95 -4.04 -0.02 1.36 16 3 N -0.58 -11.53 2.46 -176.20 -0.43 -11.96 16 4 C 0.25 6.11 5.23 -5.20 -0.03 6.08 16 5 C -0.53 -14.29 9.39 -34.44 -0.32 -14.61 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 9 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.54 10.85 6.84 -12.37 -0.08 10.76 16 14 O -0.52 -12.87 16.44 5.31 0.09 -12.78 16 15 C -0.11 -1.63 4.91 -104.85 -0.51 -2.15 16 16 C -0.06 -0.68 7.46 -39.26 -0.29 -0.97 16 17 C -0.08 -0.69 9.73 -39.24 -0.38 -1.07 16 18 C 0.01 0.05 5.73 -106.92 -0.61 -0.56 16 19 C 0.26 2.52 15.32 -22.47 -0.34 2.18 16 20 N -0.41 -4.88 18.54 41.84 0.78 -4.11 16 21 C -0.11 -1.07 9.71 -39.15 -0.38 -1.45 16 22 C 0.14 1.83 7.26 -39.03 -0.28 1.55 16 23 F -0.12 -1.82 16.66 2.25 0.04 -1.78 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 28 H 0.07 0.84 4.42 -51.93 -0.23 0.61 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.32 7.35 -51.92 -0.38 0.94 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.15 1.53 7.57 -52.49 -0.40 1.13 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -32.50 313.62 -5.58 -38.08 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.51 Total: -4.14 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.99 Total: 0.98 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 1.08 Total: -41.04 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.50 -5.58 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120681928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.478 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds