Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47015 * 2 1 4 4 C 1.46496 * 119.99990 * 274.96309 * 3 2 1 5 5 C 1.50693 * 109.47764 * 270.00434 * 4 3 2 6 6 H 1.08009 * 119.99836 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00360 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00082 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46849 * 59.99971 * 9 7 5 11 11 H 1.48501 * 109.47039 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47231 * 300.00275 * 9 7 5 13 13 C 1.34778 * 119.99633 * 94.97094 * 3 2 1 14 14 O 1.21568 * 119.99534 * 185.56196 * 13 3 2 15 15 C 1.47760 * 120.00114 * 5.55777 * 13 3 2 16 16 C 1.39702 * 120.01625 * 55.03793 * 15 13 3 17 17 C 1.37626 * 120.03711 * 180.23216 * 16 15 13 18 18 C 1.39761 * 120.06435 * 359.48847 * 17 16 15 19 19 C 1.43200 * 119.98071 * 180.23581 * 18 17 16 20 20 N 7.19228 * 95.60570 * 102.70028 * 2 1 3 21 21 C 1.39534 * 120.03535 * 0.50811 * 18 17 16 22 22 C 1.38103 * 119.95959 * 359.74829 * 21 18 17 23 23 F 1.35103 * 120.03191 * 179.97438 * 22 21 18 24 24 H 1.09001 * 109.47057 * 300.00216 * 1 2 3 25 25 H 1.08998 * 109.46905 * 59.99879 * 1 2 3 26 26 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47057 * 239.99784 * 2 1 3 28 28 H 1.08998 * 109.46905 * 120.00121 * 2 1 3 29 29 H 1.09003 * 109.47170 * 30.01027 * 4 3 2 30 30 H 1.09007 * 109.46951 * 149.99905 * 4 3 2 31 31 H 0.96993 * 120.00270 * 179.97438 * 8 7 5 32 32 H 1.08001 * 119.98665 * 359.95034 * 16 15 13 33 33 H 1.07994 * 119.96887 * 179.71974 * 17 16 15 34 34 H 1.08000 * 120.02120 * 179.77146 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1590 2.1084 -1.2639 5 6 3.5416 1.8860 -1.8204 6 1 4.2455 1.2653 -1.2858 7 6 3.9085 2.4756 -3.0115 8 7 3.0521 3.2327 -3.6618 9 14 5.6228 2.2004 -3.7009 10 1 5.8336 0.7498 -3.9388 11 1 5.7652 2.9375 -4.9822 12 1 6.6320 2.6946 -2.7301 13 6 2.3383 1.9828 1.1629 14 8 2.6464 3.1588 1.1742 15 6 2.3145 1.2131 2.4239 16 6 3.0573 0.0355 2.5380 17 6 3.0316 -0.6843 3.7108 18 6 2.2710 -0.2329 4.7929 19 6 2.2496 -0.9806 6.0140 20 7 2.2326 -1.5737 6.9828 21 6 1.5281 0.9430 4.6821 22 6 1.5487 1.6635 3.5041 23 9 0.8295 2.8020 3.3951 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.4179 1.7457 -1.9763 30 1 2.0044 3.1733 -1.0896 31 1 3.3103 3.6478 -4.4995 32 1 3.6484 -0.3128 1.7039 33 1 3.6027 -1.5969 3.7962 34 1 0.9375 1.2897 5.5173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120681928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = -40.502629 kcal Electronic energy + Delta-G solvation = -20689.091085 eV Core-core repulsion = 17308.141680 eV Total energy + Delta-G solvation = -3380.949405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.05309 -41.31515 -39.73003 -37.47987 -37.05084 -34.90396 -32.90216 -31.83990 -31.59528 -29.19860 -26.43226 -24.92563 -23.95328 -23.81666 -20.64231 -20.44906 -18.65642 -18.31377 -17.81898 -17.47316 -17.14649 -16.70879 -16.34824 -15.98222 -15.33327 -15.12307 -15.03072 -14.77254 -14.58804 -14.43874 -14.27709 -13.76092 -13.68473 -13.35412 -13.27053 -13.16146 -12.98048 -12.66920 -12.50976 -12.47309 -12.14418 -11.89300 -11.71953 -10.88106 -10.61599 -10.19161 -9.93400 -9.49016 -8.19919 -6.35153 -0.72691 0.00660 1.39999 1.43796 1.45797 1.51104 1.52867 1.87248 2.18338 2.43495 2.53124 2.64026 3.10545 3.14772 3.42584 3.65473 3.88204 4.01199 4.16041 4.40225 4.43845 4.58105 4.67925 4.88816 4.92156 4.97112 4.99527 5.03864 5.06829 5.23100 5.37994 5.50893 5.57485 5.82663 6.06149 6.33553 6.63026 6.74644 7.21214 7.38602 8.87584 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.004630 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.702476 B = 6045.801677 C = 6298.956930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 N -0.588 5.588 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.063 0.937 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.256 1.256 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.538 3.462 14 O -0.586 6.586 15 C -0.132 4.132 16 C -0.060 4.060 17 C -0.053 4.053 18 C 0.021 3.979 19 C 0.284 3.716 20 N -0.441 5.441 21 C -0.090 4.090 22 C 0.119 3.881 23 F -0.141 7.141 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.026 0.974 30 H -0.005 1.005 31 H 0.267 0.733 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -12.667 13.673 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.032 4.032 3 N -0.317 5.317 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.082 0.918 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.180 1.180 11 H -0.209 1.209 12 H -0.202 1.202 13 C 0.326 3.674 14 O -0.467 6.467 15 C -0.137 4.137 16 C -0.078 4.078 17 C -0.073 4.073 18 C 0.017 3.983 19 C -0.031 4.031 20 N -0.116 5.116 21 C -0.112 4.112 22 C 0.099 3.901 23 F -0.119 7.119 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.182 0.818 33 H 0.203 0.797 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.600 -12.850 14.971 19.900 hybrid contribution 0.394 1.289 -1.300 1.873 sum -2.206 -11.561 13.671 18.040 Atomic orbital electron populations 1.22139 0.95151 1.03584 1.01179 1.22050 0.95170 0.81147 1.04875 1.48206 1.61958 1.15428 1.06146 1.18781 0.96289 0.91054 0.79899 1.21697 0.99172 1.30949 1.06391 0.91831 1.25887 1.01789 0.94386 0.97122 1.70057 1.37289 1.32745 1.16893 0.85445 0.78850 0.79147 0.77248 1.18027 1.20886 1.20168 1.18729 0.77656 0.86443 0.84582 1.90771 1.50457 1.18198 1.87266 1.20309 1.01780 0.98382 0.93252 1.21290 0.96346 0.90447 0.99725 1.21462 0.96112 1.00570 0.89116 1.15661 1.00570 0.93451 0.88580 1.25299 0.92898 0.92672 0.92231 1.81338 1.08864 1.09921 1.11512 1.21109 0.99998 0.93672 0.96372 1.17547 0.94060 0.84190 0.94328 1.91543 1.75610 1.48262 1.96500 0.93287 0.94308 0.88192 0.89866 0.87063 0.95633 0.98657 0.92456 0.81790 0.79663 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.09 2.50 5.95 86.38 0.51 3.01 16 3 N -0.59 -23.99 2.46 -829.65 -2.04 -26.03 16 4 C 0.26 13.75 5.23 85.63 0.45 14.20 16 5 C -0.54 -30.02 9.39 25.60 0.24 -29.78 16 6 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 9 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 13 C 0.54 22.28 6.84 86.76 0.59 22.87 16 14 O -0.59 -31.03 16.44 -3.93 -0.06 -31.09 16 15 C -0.13 -3.70 4.91 -20.01 -0.10 -3.80 16 16 C -0.06 -1.07 7.46 22.48 0.17 -0.91 16 17 C -0.05 -0.58 9.73 22.49 0.22 -0.36 16 18 C 0.02 0.28 5.73 -21.35 -0.12 0.15 16 19 C 0.28 4.32 15.32 88.33 1.35 5.67 16 20 N -0.44 -8.97 18.54 19.00 0.35 -8.62 16 21 C -0.09 -1.46 9.71 22.55 0.22 -1.24 16 22 C 0.12 3.01 7.26 22.63 0.16 3.17 16 23 F -0.14 -4.50 16.66 44.97 0.75 -3.75 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 2.37 8.11 -2.39 -0.02 2.36 16 28 H 0.11 2.24 4.42 -2.39 -0.01 2.23 16 29 H 0.03 1.37 8.07 -2.39 -0.02 1.36 16 30 H 0.00 -0.29 7.35 -2.38 -0.02 -0.31 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.16 2.66 7.57 -2.91 -0.02 2.63 16 33 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.86 313.62 7.34 -69.52 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: 1.13 Total: -0.65 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.90 Total: 10.57 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.40 Total: -89.87 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.06 Total: -31.09 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.75 Total: -3.75 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -76.86 7.34 -69.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120681928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.016 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds