Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21221 * 120.00678 * 2 1 4 4 C 1.47415 * 119.99726 * 180.02562 * 2 1 3 5 5 C 1.39825 * 120.02204 * 353.95866 * 4 2 1 6 6 C 1.37748 * 119.97900 * 180.25983 * 5 4 2 7 7 C 1.39640 * 120.01916 * 359.46318 * 6 5 4 8 8 C 1.47963 * 119.97426 * 180.23921 * 7 6 5 9 9 O 1.21442 * 119.99461 * 180.27600 * 8 7 6 10 10 O 1.34687 * 120.00162 * 0.27031 * 8 7 6 11 11 C 1.45190 * 116.99851 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47312 * 330.00286 * 11 10 8 13 13 C 1.52999 * 109.47609 * 90.00288 * 11 10 8 14 14 C 1.50704 * 109.47243 * 210.00236 * 11 10 8 15 15 H 1.07996 * 119.99649 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00231 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00015 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 119.99916 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47230 * 60.00467 * 18 16 14 20 20 H 1.48501 * 109.47403 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47530 * 300.00298 * 18 16 14 22 22 C 1.39586 * 120.04429 * 0.51505 * 7 6 5 23 23 C 1.37792 * 120.02800 * 359.76444 * 22 7 6 24 24 C 1.50697 * 120.01537 * 179.97438 * 23 22 7 25 25 H 1.08996 * 109.47353 * 240.00080 * 1 2 3 26 26 H 1.09004 * 109.46506 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47561 * 119.99345 * 1 2 3 28 28 H 1.08005 * 120.00998 * 359.97438 * 5 4 2 29 29 H 1.07990 * 119.99087 * 179.71937 * 6 5 4 30 30 H 1.08991 * 109.47847 * 179.97438 * 13 11 10 31 31 H 1.09004 * 109.46872 * 300.00062 * 13 11 10 32 32 H 1.09005 * 109.46785 * 59.99676 * 13 11 10 33 33 H 0.97002 * 120.00251 * 179.97438 * 17 16 14 34 34 H 1.08008 * 119.98987 * 179.75170 * 22 7 6 35 35 H 1.09008 * 109.46792 * 263.33303 * 24 23 22 36 36 H 1.08994 * 109.47407 * 23.33286 * 24 23 22 37 37 H 1.09003 * 109.47371 * 143.34014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0497 0.0000 4 6 2.2440 -1.2767 -0.0006 5 6 1.5511 -2.4845 0.1263 6 6 2.2411 -3.6767 0.1310 7 6 3.6312 -3.6798 -0.0021 8 6 4.3709 -4.9613 -0.0022 9 8 5.5803 -4.9642 -0.1129 10 8 3.7030 -6.1244 0.1206 11 6 4.4935 -7.3423 0.1131 12 1 5.3868 -7.1920 -0.4932 13 6 4.9022 -7.6941 1.5449 14 6 3.6763 -8.4680 -0.4669 15 1 2.6644 -8.2861 -0.7972 16 6 4.2211 -9.7298 -0.5768 17 7 5.4536 -9.9512 -0.1751 18 14 3.2080 -11.1251 -1.2950 19 1 2.8103 -10.7839 -2.6845 20 1 4.0164 -12.3708 -1.3029 21 1 1.9916 -11.3303 -0.4683 22 6 4.3238 -2.4746 -0.1293 23 6 3.6360 -1.2807 -0.1284 24 6 4.3840 0.0204 -0.2652 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3632 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 0.4756 -2.4825 0.2252 29 1 1.7066 -4.6094 0.2336 30 1 5.4952 -8.6085 1.5394 31 1 5.4932 -6.8799 1.9644 32 1 4.0088 -7.8444 2.1512 33 1 5.8368 -10.8390 -0.2520 34 1 5.3993 -2.4779 -0.2281 35 1 4.5547 0.4470 0.7233 36 1 5.3418 -0.1607 -0.7530 37 1 3.7967 0.7160 -0.8646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122701902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -106.997707 kcal Electronic energy + Delta-G solvation = -20559.540348 eV Core-core repulsion = 17266.875054 eV Total energy + Delta-G solvation = -3292.665294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53870 -39.53169 -38.02630 -35.76079 -33.40454 -32.94387 -32.26029 -29.83499 -29.46101 -27.03533 -25.41388 -25.04616 -22.00761 -21.69645 -20.39680 -19.47410 -17.40134 -16.83284 -16.73574 -15.91339 -15.58193 -15.41966 -15.03449 -14.72303 -14.43647 -14.25706 -13.56164 -13.34569 -13.25974 -12.72605 -12.51149 -12.41903 -12.38841 -12.11608 -12.04197 -11.81519 -11.28163 -11.19050 -11.08740 -10.89153 -10.44128 -10.32578 -9.92001 -9.67019 -9.61183 -9.13471 -8.97254 -8.86966 -8.53197 -6.22345 -4.29852 0.22418 1.23332 1.97885 3.02545 3.23727 3.26670 3.28790 3.47334 3.79334 3.82918 4.29212 4.56342 4.67384 4.79275 4.99600 5.09651 5.10601 5.15788 5.23863 5.28956 5.54436 5.58087 5.64311 5.72510 5.80433 6.07429 6.11665 6.30878 6.36330 6.58492 6.68078 6.84420 6.85461 7.07156 7.27546 7.53439 7.66733 7.86036 8.07797 8.52481 8.80593 9.35600 10.85134 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.003651 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.826399 B = 7667.403630 C = 8270.305588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.393 3.607 3 O -0.452 6.452 4 C -0.159 4.159 5 C -0.083 4.083 6 C -0.084 4.084 7 C -0.072 4.072 8 C 0.491 3.509 9 O -0.511 6.511 10 O -0.348 6.348 11 C 0.216 3.784 12 H 0.048 0.952 13 C -0.155 4.155 14 C -0.523 4.523 15 H 0.069 0.931 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.913 3.087 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.078 4.078 23 C -0.039 4.039 24 C -0.120 4.120 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.038 0.962 33 H 0.267 0.733 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 16.444 0.942 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.329 6.329 4 C -0.160 4.160 5 C -0.101 4.101 6 C -0.102 4.102 7 C -0.074 4.074 8 C 0.335 3.665 9 O -0.402 6.402 10 O -0.264 6.264 11 C 0.164 3.836 12 H 0.066 0.934 13 C -0.213 4.213 14 C -0.561 4.561 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.740 3.260 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.096 4.096 23 C -0.039 4.039 24 C -0.176 4.176 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.156 0.844 29 H 0.166 0.834 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.213 16.770 0.930 18.696 hybrid contribution -0.330 -1.119 -0.290 1.202 sum -8.544 15.651 0.639 17.843 Atomic orbital electron populations 1.22258 0.93599 1.05104 1.04768 1.22557 0.91664 0.87493 0.71039 1.90487 1.71602 1.34564 1.36218 1.20512 0.94023 0.95041 1.06426 1.21383 1.00227 0.90950 0.97512 1.21546 0.93068 0.99249 0.96375 1.19705 0.94057 0.91710 1.01908 1.21067 0.86038 0.85593 0.73831 1.90770 1.15210 1.88335 1.45855 1.86528 1.43474 1.15517 1.80917 1.20703 0.91637 0.76297 0.95004 0.93426 1.22174 1.00195 1.02160 0.96786 1.20970 1.00635 0.92467 1.42031 0.91272 1.24887 0.95257 0.98559 0.95223 1.69884 1.13658 1.22870 1.46229 0.86311 0.79732 0.80328 0.79628 1.19947 1.21010 1.19900 1.21215 1.01084 0.89974 0.97373 1.20107 0.92491 0.95740 0.95576 1.21079 0.99507 0.93764 1.03239 0.88672 0.89737 0.88678 0.84375 0.83356 0.88125 0.96468 0.94329 0.92263 0.83956 0.90553 0.91842 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 9.01 36.00 0.32 -0.90 16 2 C 0.39 3.94 7.16 -30.58 -0.22 3.72 16 3 O -0.45 -5.65 14.05 5.61 0.08 -5.57 16 4 C -0.16 -1.80 5.87 -104.99 -0.62 -2.42 16 5 C -0.08 -0.86 9.45 -39.17 -0.37 -1.23 16 6 C -0.08 -1.14 9.60 -39.24 -0.38 -1.51 16 7 C -0.07 -1.19 5.88 -104.89 -0.62 -1.81 16 8 C 0.49 10.41 7.88 34.72 0.27 10.68 16 9 O -0.51 -12.13 15.59 -19.22 -0.30 -12.43 16 10 O -0.35 -8.13 9.10 -40.46 -0.37 -8.50 16 11 C 0.22 5.73 2.56 -27.88 -0.07 5.66 16 12 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 13 C -0.16 -3.91 9.33 37.16 0.35 -3.56 16 14 C -0.52 -14.44 8.90 -34.44 -0.31 -14.75 16 15 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.00 11.32 55.43 0.63 -24.38 16 18 Si 0.91 20.74 29.54 -169.99 -5.02 15.71 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.08 -1.15 9.20 -39.24 -0.36 -1.51 16 23 C -0.04 -0.49 5.91 -104.21 -0.62 -1.11 16 24 C -0.12 -1.34 8.72 36.00 0.31 -1.03 16 25 H 0.09 0.43 7.90 -51.93 -0.41 0.02 16 26 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.14 0.94 6.97 -52.48 -0.37 0.57 16 29 H 0.15 1.95 7.60 -52.49 -0.40 1.55 16 30 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 34 H 0.14 2.07 7.63 -52.48 -0.40 1.67 16 35 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 36 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 37 H 0.09 1.05 5.84 -51.93 -0.30 0.74 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -31.33 319.72 -7.20 -38.53 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.64 Total: -0.06 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.39 Total: -8.13 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.59 Total: -26.50 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.33 -7.20 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122701902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.469 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds