Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21221 * 120.00678 * 2 1 4 4 C 1.47415 * 119.99726 * 180.02562 * 2 1 3 5 5 C 1.39825 * 120.02204 * 353.95866 * 4 2 1 6 6 C 1.37748 * 119.97900 * 180.25983 * 5 4 2 7 7 C 1.39640 * 120.01916 * 359.46318 * 6 5 4 8 8 C 1.47963 * 119.97426 * 180.23921 * 7 6 5 9 9 O 1.21442 * 119.99461 * 180.27600 * 8 7 6 10 10 O 1.34687 * 120.00162 * 0.27031 * 8 7 6 11 11 C 1.45190 * 116.99851 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47312 * 330.00286 * 11 10 8 13 13 C 1.52999 * 109.47609 * 90.00288 * 11 10 8 14 14 C 1.50704 * 109.47243 * 210.00236 * 11 10 8 15 15 H 1.07996 * 119.99649 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00231 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00015 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 119.99916 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47230 * 60.00467 * 18 16 14 20 20 H 1.48501 * 109.47403 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47530 * 300.00298 * 18 16 14 22 22 C 1.39586 * 120.04429 * 0.51505 * 7 6 5 23 23 C 1.37792 * 120.02800 * 359.76444 * 22 7 6 24 24 C 1.50697 * 120.01537 * 179.97438 * 23 22 7 25 25 H 1.08996 * 109.47353 * 240.00080 * 1 2 3 26 26 H 1.09004 * 109.46506 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47561 * 119.99345 * 1 2 3 28 28 H 1.08005 * 120.00998 * 359.97438 * 5 4 2 29 29 H 1.07990 * 119.99087 * 179.71937 * 6 5 4 30 30 H 1.08991 * 109.47847 * 179.97438 * 13 11 10 31 31 H 1.09004 * 109.46872 * 300.00062 * 13 11 10 32 32 H 1.09005 * 109.46785 * 59.99676 * 13 11 10 33 33 H 0.97002 * 120.00251 * 179.97438 * 17 16 14 34 34 H 1.08008 * 119.98987 * 179.75170 * 22 7 6 35 35 H 1.09008 * 109.46792 * 263.33303 * 24 23 22 36 36 H 1.08994 * 109.47407 * 23.33286 * 24 23 22 37 37 H 1.09003 * 109.47371 * 143.34014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0497 0.0000 4 6 2.2440 -1.2767 -0.0006 5 6 1.5511 -2.4845 0.1263 6 6 2.2411 -3.6767 0.1310 7 6 3.6312 -3.6798 -0.0021 8 6 4.3709 -4.9613 -0.0022 9 8 5.5803 -4.9642 -0.1129 10 8 3.7030 -6.1244 0.1206 11 6 4.4935 -7.3423 0.1131 12 1 5.3868 -7.1920 -0.4932 13 6 4.9022 -7.6941 1.5449 14 6 3.6763 -8.4680 -0.4669 15 1 2.6644 -8.2861 -0.7972 16 6 4.2211 -9.7298 -0.5768 17 7 5.4536 -9.9512 -0.1751 18 14 3.2080 -11.1251 -1.2950 19 1 2.8103 -10.7839 -2.6845 20 1 4.0164 -12.3708 -1.3029 21 1 1.9916 -11.3303 -0.4683 22 6 4.3238 -2.4746 -0.1293 23 6 3.6360 -1.2807 -0.1284 24 6 4.3840 0.0204 -0.2652 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3632 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 0.4756 -2.4825 0.2252 29 1 1.7066 -4.6094 0.2336 30 1 5.4952 -8.6085 1.5394 31 1 5.4932 -6.8799 1.9644 32 1 4.0088 -7.8444 2.1512 33 1 5.8368 -10.8390 -0.2520 34 1 5.3993 -2.4779 -0.2281 35 1 4.5547 0.4470 0.7233 36 1 5.3418 -0.1607 -0.7530 37 1 3.7967 0.7160 -0.8646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122701902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = -124.014839 kcal Electronic energy + Delta-G solvation = -20560.278266 eV Core-core repulsion = 17266.875054 eV Total energy + Delta-G solvation = -3293.403212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72129 -40.94482 -39.12994 -37.60488 -35.38009 -33.99087 -33.29636 -31.64670 -30.41020 -27.98446 -27.48246 -26.34957 -23.51770 -22.90034 -21.76095 -20.76932 -19.05405 -18.51872 -17.89002 -17.46282 -16.95972 -16.77030 -16.40894 -16.15131 -15.50858 -15.16276 -15.02381 -14.50001 -14.28141 -14.24711 -14.06992 -13.68933 -13.32486 -13.24283 -13.05555 -12.99591 -12.94265 -12.81850 -12.80135 -12.41088 -12.19254 -12.15750 -11.66049 -11.58593 -11.03716 -10.61322 -10.54479 -10.21505 -9.88859 -8.29542 -6.47097 -0.85410 0.22130 0.94875 1.42698 1.47032 1.54768 1.71591 1.83799 2.40095 2.66526 3.01170 3.01848 3.63335 3.68975 3.74779 4.08162 4.10362 4.23742 4.44725 4.52533 4.57686 4.71698 4.75120 4.75444 4.76785 4.78777 4.82487 5.00563 5.10071 5.16766 5.20010 5.26415 5.41709 5.46311 5.58314 5.67560 5.85510 6.01005 6.51148 6.56534 6.83698 7.24262 8.78310 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.003651 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.826399 B = 7667.403630 C = 8270.305588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.395 3.605 3 O -0.480 6.480 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.085 4.085 7 C -0.100 4.100 8 C 0.487 3.513 9 O -0.549 6.549 10 O -0.349 6.349 11 C 0.217 3.783 12 H 0.007 0.993 13 C -0.143 4.143 14 C -0.549 4.549 15 H 0.072 0.928 16 C 0.016 3.984 17 N -0.919 5.919 18 Si 0.986 3.014 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.261 1.261 22 C -0.085 4.085 23 C -0.048 4.048 24 C -0.116 4.116 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.188 0.812 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.271 0.729 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 17.231 0.875 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.276 3.724 3 O -0.358 6.358 4 C -0.154 4.154 5 C -0.076 4.076 6 C -0.103 4.103 7 C -0.102 4.102 8 C 0.334 3.666 9 O -0.441 6.441 10 O -0.265 6.265 11 C 0.164 3.836 12 H 0.024 0.976 13 C -0.201 4.201 14 C -0.586 4.586 15 H 0.091 0.909 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.808 3.192 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.185 1.185 22 C -0.103 4.103 23 C -0.048 4.048 24 C -0.172 4.172 25 H 0.138 0.862 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.206 0.794 29 H 0.169 0.831 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.598 17.581 0.871 21.080 hybrid contribution 0.719 -1.210 -0.267 1.432 sum -10.880 16.371 0.603 19.666 Atomic orbital electron populations 1.22316 0.89703 1.06271 1.06864 1.23051 0.93500 0.86081 0.69762 1.90495 1.72609 1.35221 1.37477 1.20948 0.93546 0.96607 1.04343 1.21791 1.02303 0.88916 0.94601 1.21672 0.91630 1.00857 0.96117 1.19505 0.95322 0.89324 1.06013 1.21976 0.86069 0.86302 0.72292 1.90737 1.16947 1.88737 1.47728 1.86506 1.42997 1.15546 1.81501 1.20426 0.90566 0.77684 0.94925 0.97550 1.22001 1.00362 1.01370 0.96344 1.21267 1.00974 0.93284 1.43097 0.90935 1.25867 0.96345 1.01071 0.95116 1.70015 1.15253 1.23677 1.46697 0.85193 0.78323 0.76650 0.79010 1.19258 1.20423 1.18532 1.21153 1.00774 0.90272 0.98124 1.20308 0.93638 0.95285 0.95548 1.21063 0.99693 0.92966 1.03463 0.86208 0.89298 0.86480 0.79449 0.83051 0.89912 0.96010 0.93173 0.91945 0.85073 0.90251 0.91268 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 9.01 71.23 0.64 -0.75 16 2 C 0.40 6.56 7.16 28.10 0.20 6.77 16 3 O -0.48 -10.91 14.05 -2.85 -0.04 -10.95 16 4 C -0.15 -3.04 5.87 -20.10 -0.12 -3.16 16 5 C -0.06 -1.00 9.45 22.54 0.21 -0.79 16 6 C -0.08 -2.14 9.60 22.49 0.22 -1.93 16 7 C -0.10 -3.35 5.88 -20.04 -0.12 -3.47 16 8 C 0.49 21.64 7.88 70.40 0.55 22.20 16 9 O -0.55 -27.79 15.59 20.02 0.31 -27.48 16 10 O -0.35 -16.88 9.10 -55.97 -0.51 -17.39 16 11 C 0.22 12.01 2.56 29.85 0.08 12.08 16 12 H 0.01 0.42 7.16 -2.38 -0.02 0.40 16 13 C -0.14 -7.43 9.33 71.98 0.67 -6.75 16 14 C -0.55 -30.81 8.90 25.60 0.23 -30.58 16 15 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 16 C 0.02 0.86 5.30 84.66 0.45 1.31 16 17 N -0.92 -52.70 11.32 21.45 0.24 -52.46 16 18 Si 0.99 42.13 29.54 68.60 2.03 44.16 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 22 C -0.08 -2.54 9.20 22.49 0.21 -2.33 16 23 C -0.05 -1.17 5.91 -19.60 -0.12 -1.28 16 24 C -0.12 -2.52 8.72 71.23 0.62 -1.89 16 25 H 0.12 0.35 7.90 -2.39 -0.02 0.33 16 26 H 0.09 0.64 8.12 -2.38 -0.02 0.62 16 27 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.19 1.36 6.97 -2.91 -0.02 1.34 16 29 H 0.15 3.73 7.60 -2.92 -0.02 3.71 16 30 H 0.08 4.59 6.07 -2.39 -0.01 4.58 16 31 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 2.41 8.14 -2.38 -0.02 2.40 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.13 4.09 7.63 -2.91 -0.02 4.07 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 37 H 0.09 1.99 5.84 -2.39 -0.01 1.98 16 Total: -1.00 -71.17 319.72 6.84 -64.33 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.08 Total: 10.37 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 3.73 Total: -10.58 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.24 Total: -52.46 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -0.24 Total: -55.82 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -71.17 6.84 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122701902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.686 kcal (2) G-P(sol) polarization free energy of solvation -71.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds