Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21222 * 120.00295 * 2 1 4 4 C 1.47406 * 119.99886 * 180.02562 * 2 1 3 5 5 C 1.39827 * 120.02395 * 6.01036 * 4 2 1 6 6 C 1.37753 * 119.97562 * 179.74198 * 5 4 2 7 7 C 1.39629 * 120.02083 * 0.55352 * 6 5 4 8 8 C 1.47971 * 119.97400 * 179.71794 * 7 6 5 9 9 O 1.21435 * 120.00226 * 179.72493 * 8 7 6 10 10 O 1.34687 * 119.99899 * 359.72608 * 8 7 6 11 11 C 1.45199 * 116.99967 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47298 * 29.99921 * 11 10 8 13 13 C 1.53007 * 109.46995 * 269.99781 * 11 10 8 14 14 C 1.50696 * 109.47143 * 150.00384 * 11 10 8 15 15 H 1.08003 * 120.00166 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00286 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99774 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00414 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46669 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47358 * 119.99622 * 18 16 14 21 21 H 1.48499 * 109.46903 * 239.99871 * 18 16 14 22 22 C 1.39592 * 120.04847 * 359.44482 * 7 6 5 23 23 C 1.37782 * 120.02369 * 0.27786 * 22 7 6 24 24 C 1.50701 * 120.01273 * 180.02562 * 23 22 7 25 25 H 1.09007 * 109.46645 * 269.99683 * 1 2 3 26 26 H 1.09001 * 109.46921 * 29.98706 * 1 2 3 27 27 H 1.08995 * 109.47333 * 149.99635 * 1 2 3 28 28 H 1.08004 * 120.00769 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.98633 * 180.26664 * 6 5 4 30 30 H 1.08994 * 109.46883 * 179.97438 * 13 11 10 31 31 H 1.09000 * 109.46934 * 60.00155 * 13 11 10 32 32 H 1.09000 * 109.47212 * 300.00193 * 13 11 10 33 33 H 0.96996 * 120.00164 * 180.02562 * 17 16 14 34 34 H 1.08002 * 119.98470 * 180.25384 * 22 7 6 35 35 H 1.09005 * 109.47016 * 96.66290 * 24 23 22 36 36 H 1.08998 * 109.47004 * 216.66019 * 24 23 22 37 37 H 1.08998 * 109.46988 * 336.66454 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2766 -0.0006 5 6 1.5511 -2.4844 -0.1279 6 6 2.2413 -3.6765 -0.1336 7 6 3.6312 -3.6797 -0.0008 8 6 4.3710 -4.9612 -0.0008 9 8 5.5803 -4.9642 0.1096 10 8 3.7031 -6.1243 -0.1234 11 6 4.4935 -7.3423 -0.1161 12 1 5.3869 -7.1920 0.4900 13 6 4.9018 -7.6939 -1.5481 14 6 3.6764 -8.4678 0.4640 15 1 2.6644 -8.2859 0.7945 16 6 4.2211 -9.7297 0.5737 17 7 5.4536 -9.9511 0.1718 18 14 3.2085 -11.1248 1.2934 19 1 1.8636 -10.6184 1.6674 20 1 3.0682 -12.2059 0.2852 21 1 3.8891 -11.6589 2.5004 22 6 4.3240 -2.4744 0.1263 23 6 3.6361 -1.2806 0.1266 24 6 4.3842 0.0204 0.2633 25 1 -0.3633 -0.0001 1.0278 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8899 -0.5139 28 1 0.4755 -2.4824 -0.2263 29 1 1.7067 -4.6093 -0.2363 30 1 5.4955 -8.6080 -1.5425 31 1 5.4927 -6.8798 -1.9677 32 1 4.0084 -7.8442 -2.1542 33 1 5.8367 -10.8389 0.2486 34 1 5.3995 -2.4778 0.2249 35 1 4.5541 0.4474 -0.7252 36 1 3.7973 0.7157 0.8634 37 1 5.3423 -0.1609 0.7503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122701903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = -105.586314 kcal Electronic energy + Delta-G solvation = -20560.810874 eV Core-core repulsion = 17268.206782 eV Total energy + Delta-G solvation = -3292.604091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54499 -39.53287 -38.02586 -35.76206 -33.40634 -32.95897 -32.28127 -29.82168 -29.45325 -27.03875 -25.41739 -25.05162 -22.02881 -21.69405 -20.39423 -19.47108 -17.41505 -16.83664 -16.73842 -15.92363 -15.58561 -15.41829 -15.03642 -14.75898 -14.46994 -14.25920 -13.57121 -13.32878 -13.26418 -12.66978 -12.49435 -12.42803 -12.39132 -12.12414 -12.03405 -11.82378 -11.27505 -11.17980 -11.10915 -10.88630 -10.40946 -10.32835 -9.92102 -9.66442 -9.61642 -9.13658 -8.95669 -8.86995 -8.54052 -6.22801 -4.30054 0.22120 1.23259 1.97873 3.02473 3.20957 3.26922 3.31281 3.47601 3.79184 3.82797 4.29097 4.55417 4.67232 4.73637 5.03537 5.10343 5.11485 5.15553 5.21367 5.29361 5.53446 5.59621 5.64453 5.71437 5.80464 6.07747 6.11560 6.30704 6.36228 6.58396 6.67927 6.84327 6.85342 7.07101 7.27575 7.53668 7.66526 7.86053 8.07592 8.52411 8.81000 9.35534 10.84783 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031920 B = 0.003651 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.989049 B = 7667.203170 C = 8270.060870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.394 3.606 3 O -0.453 6.453 4 C -0.159 4.159 5 C -0.084 4.084 6 C -0.084 4.084 7 C -0.072 4.072 8 C 0.491 3.509 9 O -0.511 6.511 10 O -0.348 6.348 11 C 0.215 3.785 12 H 0.048 0.952 13 C -0.155 4.155 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.913 3.087 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.078 4.078 23 C -0.039 4.039 24 C -0.120 4.120 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 16.500 -0.888 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.273 3.727 3 O -0.330 6.330 4 C -0.160 4.160 5 C -0.102 4.102 6 C -0.102 4.102 7 C -0.074 4.074 8 C 0.335 3.665 9 O -0.402 6.402 10 O -0.264 6.264 11 C 0.163 3.837 12 H 0.066 0.934 13 C -0.213 4.213 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.097 4.097 23 C -0.039 4.039 24 C -0.176 4.176 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.237 16.830 -0.875 18.758 hybrid contribution -0.307 -1.123 0.294 1.201 sum -8.543 15.706 -0.581 17.889 Atomic orbital electron populations 1.22252 0.93653 1.05007 1.04892 1.22543 0.91649 0.87509 0.70996 1.90487 1.71552 1.34582 1.36333 1.20516 0.94023 0.95059 1.06391 1.21434 1.00241 0.90969 0.97516 1.21548 0.93070 0.99250 0.96368 1.19708 0.94059 0.91713 1.01885 1.21066 0.86035 0.85594 0.73832 1.90768 1.15211 1.88332 1.45854 1.86530 1.43472 1.15515 1.80917 1.20716 0.91656 0.76318 0.95017 0.93415 1.22173 1.00195 1.02166 0.96778 1.21047 1.00670 0.92425 1.41792 0.91169 1.24895 0.95260 0.98582 0.95246 1.69907 1.13667 1.22678 1.46376 0.86205 0.80041 0.81116 0.78697 1.19447 1.20682 1.20727 1.21214 1.01085 0.89975 0.97378 1.20106 0.92481 0.95744 0.95561 1.21080 0.99502 0.93761 1.03245 0.88364 0.89419 0.89293 0.84270 0.83345 0.88126 0.96469 0.94319 0.92383 0.83951 0.90548 0.89141 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 9.87 36.00 0.36 -0.88 16 2 C 0.39 3.95 7.16 -30.58 -0.22 3.73 16 3 O -0.45 -5.65 14.07 5.61 0.08 -5.58 16 4 C -0.16 -1.81 5.87 -104.99 -0.62 -2.42 16 5 C -0.08 -0.88 9.39 -39.16 -0.37 -1.24 16 6 C -0.08 -1.14 9.60 -39.24 -0.38 -1.51 16 7 C -0.07 -1.19 5.88 -104.89 -0.62 -1.80 16 8 C 0.49 10.41 7.88 34.72 0.27 10.68 16 9 O -0.51 -12.12 15.59 -19.21 -0.30 -12.42 16 10 O -0.35 -8.13 9.10 -40.46 -0.37 -8.50 16 11 C 0.22 5.71 2.56 -27.88 -0.07 5.64 16 12 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 13 C -0.16 -3.91 9.33 37.16 0.35 -3.56 16 14 C -0.52 -14.38 8.90 -34.44 -0.31 -14.69 16 15 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 18 Si 0.91 20.73 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 C -0.08 -1.15 9.20 -39.24 -0.36 -1.51 16 23 C -0.04 -0.49 5.91 -104.21 -0.62 -1.11 16 24 C -0.12 -1.34 8.72 36.01 0.31 -1.02 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.40 6.26 -51.93 -0.33 0.08 16 28 H 0.14 0.95 6.23 -52.48 -0.33 0.62 16 29 H 0.15 1.96 7.60 -52.49 -0.40 1.56 16 30 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.14 2.07 7.63 -52.49 -0.40 1.67 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.05 5.84 -51.93 -0.30 0.74 16 37 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -31.35 318.17 -7.06 -38.42 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.52 Total: 0.03 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.36 Total: -8.10 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.63 Total: -24.35 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.59 Total: -26.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.35 -7.06 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122701903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.170 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds