Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21222 * 120.00295 * 2 1 4 4 C 1.47406 * 119.99886 * 180.02562 * 2 1 3 5 5 C 1.39827 * 120.02395 * 6.01036 * 4 2 1 6 6 C 1.37753 * 119.97562 * 179.74198 * 5 4 2 7 7 C 1.39629 * 120.02083 * 0.55352 * 6 5 4 8 8 C 1.47971 * 119.97400 * 179.71794 * 7 6 5 9 9 O 1.21435 * 120.00226 * 179.72493 * 8 7 6 10 10 O 1.34687 * 119.99899 * 359.72608 * 8 7 6 11 11 C 1.45199 * 116.99967 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47298 * 29.99921 * 11 10 8 13 13 C 1.53007 * 109.46995 * 269.99781 * 11 10 8 14 14 C 1.50696 * 109.47143 * 150.00384 * 11 10 8 15 15 H 1.08003 * 120.00166 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00286 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99774 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00414 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46669 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47358 * 119.99622 * 18 16 14 21 21 H 1.48499 * 109.46903 * 239.99871 * 18 16 14 22 22 C 1.39592 * 120.04847 * 359.44482 * 7 6 5 23 23 C 1.37782 * 120.02369 * 0.27786 * 22 7 6 24 24 C 1.50701 * 120.01273 * 180.02562 * 23 22 7 25 25 H 1.09007 * 109.46645 * 269.99683 * 1 2 3 26 26 H 1.09001 * 109.46921 * 29.98706 * 1 2 3 27 27 H 1.08995 * 109.47333 * 149.99635 * 1 2 3 28 28 H 1.08004 * 120.00769 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.98633 * 180.26664 * 6 5 4 30 30 H 1.08994 * 109.46883 * 179.97438 * 13 11 10 31 31 H 1.09000 * 109.46934 * 60.00155 * 13 11 10 32 32 H 1.09000 * 109.47212 * 300.00193 * 13 11 10 33 33 H 0.96996 * 120.00164 * 180.02562 * 17 16 14 34 34 H 1.08002 * 119.98470 * 180.25384 * 22 7 6 35 35 H 1.09005 * 109.47016 * 96.66290 * 24 23 22 36 36 H 1.08998 * 109.47004 * 216.66019 * 24 23 22 37 37 H 1.08998 * 109.46988 * 336.66454 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2766 -0.0006 5 6 1.5511 -2.4844 -0.1279 6 6 2.2413 -3.6765 -0.1336 7 6 3.6312 -3.6797 -0.0008 8 6 4.3710 -4.9612 -0.0008 9 8 5.5803 -4.9642 0.1096 10 8 3.7031 -6.1243 -0.1234 11 6 4.4935 -7.3423 -0.1161 12 1 5.3869 -7.1920 0.4900 13 6 4.9018 -7.6939 -1.5481 14 6 3.6764 -8.4678 0.4640 15 1 2.6644 -8.2859 0.7945 16 6 4.2211 -9.7297 0.5737 17 7 5.4536 -9.9511 0.1718 18 14 3.2085 -11.1248 1.2934 19 1 1.8636 -10.6184 1.6674 20 1 3.0682 -12.2059 0.2852 21 1 3.8891 -11.6589 2.5004 22 6 4.3240 -2.4744 0.1263 23 6 3.6361 -1.2806 0.1266 24 6 4.3842 0.0204 0.2633 25 1 -0.3633 -0.0001 1.0278 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8899 -0.5139 28 1 0.4755 -2.4824 -0.2263 29 1 1.7067 -4.6093 -0.2363 30 1 5.4955 -8.6080 -1.5425 31 1 5.4927 -6.8798 -1.9677 32 1 4.0084 -7.8442 -2.1542 33 1 5.8367 -10.8389 0.2486 34 1 5.3995 -2.4778 0.2249 35 1 4.5541 0.4474 -0.7252 36 1 3.7973 0.7157 0.8634 37 1 5.3423 -0.1609 0.7503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122701903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = -122.664786 kcal Electronic energy + Delta-G solvation = -20561.551452 eV Core-core repulsion = 17268.206782 eV Total energy + Delta-G solvation = -3293.344669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72632 -40.95026 -39.13102 -37.60605 -35.38081 -34.00183 -33.32366 -31.64707 -30.39538 -27.98836 -27.48606 -26.35592 -23.52704 -22.91329 -21.76049 -20.76708 -19.05853 -18.52118 -17.91199 -17.45797 -16.96386 -16.77407 -16.40932 -16.15640 -15.57117 -15.16913 -15.02572 -14.50913 -14.27894 -14.25622 -14.07790 -13.67173 -13.31964 -13.24683 -13.05469 -12.97805 -12.95764 -12.82777 -12.80579 -12.42010 -12.16143 -12.12339 -11.66253 -11.58986 -11.01865 -10.62601 -10.54092 -10.21968 -9.89072 -8.29954 -6.47195 -0.85903 0.21808 0.94522 1.42816 1.43864 1.57358 1.71328 1.83920 2.39858 2.66126 3.00813 3.01543 3.62686 3.68519 3.73899 4.07462 4.09349 4.24739 4.43107 4.49603 4.59602 4.69205 4.73165 4.74959 4.75832 4.79106 4.86752 4.99771 5.09876 5.16928 5.18862 5.26578 5.41583 5.46588 5.58276 5.67148 5.85546 6.00871 6.50732 6.56821 6.83760 7.24242 8.78344 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031920 B = 0.003651 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.989049 B = 7667.203170 C = 8270.060870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.396 3.604 3 O -0.480 6.480 4 C -0.154 4.154 5 C -0.060 4.060 6 C -0.085 4.085 7 C -0.100 4.100 8 C 0.487 3.513 9 O -0.548 6.548 10 O -0.350 6.350 11 C 0.217 3.783 12 H 0.007 0.993 13 C -0.143 4.143 14 C -0.546 4.546 15 H 0.072 0.928 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.278 1.278 22 C -0.085 4.085 23 C -0.047 4.047 24 C -0.116 4.116 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.189 0.811 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.271 0.729 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 17.316 -0.791 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.277 3.723 3 O -0.358 6.358 4 C -0.155 4.155 5 C -0.078 4.078 6 C -0.103 4.103 7 C -0.101 4.101 8 C 0.334 3.666 9 O -0.441 6.441 10 O -0.266 6.266 11 C 0.163 3.837 12 H 0.025 0.975 13 C -0.201 4.201 14 C -0.584 4.584 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.203 1.203 22 C -0.103 4.103 23 C -0.047 4.047 24 C -0.172 4.172 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.206 0.794 29 H 0.170 0.830 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.568 17.668 -0.786 21.133 hybrid contribution 0.728 -1.225 0.262 1.449 sum -10.840 16.443 -0.523 19.702 Atomic orbital electron populations 1.22307 0.89779 1.06612 1.06499 1.23031 0.93471 0.86103 0.69734 1.90494 1.72548 1.35218 1.37540 1.20956 0.93570 0.96626 1.04327 1.21843 1.02303 0.88965 0.94653 1.21673 0.91647 1.00844 0.96104 1.19509 0.95312 0.89342 1.05978 1.21971 0.86065 0.86298 0.72296 1.90735 1.16940 1.88733 1.47720 1.86508 1.42999 1.15548 1.81501 1.20439 0.90582 0.77694 0.94939 0.97525 1.22001 1.00368 1.01372 0.96340 1.21320 1.00939 0.93248 1.42885 0.90964 1.25870 0.96350 1.01081 0.95148 1.70030 1.15247 1.23572 1.46800 0.85089 0.78614 0.77489 0.77938 1.18372 1.19670 1.20314 1.21155 1.00785 0.90265 0.98113 1.20308 0.93610 0.95306 0.95512 1.21066 0.99695 0.92950 1.03473 0.86478 0.88651 0.86927 0.79407 0.83042 0.89919 0.96013 0.93151 0.91964 0.85042 0.90243 0.89174 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 9.87 71.23 0.70 -0.72 16 2 C 0.40 6.60 7.16 28.10 0.20 6.80 16 3 O -0.48 -10.88 14.07 -2.85 -0.04 -10.92 16 4 C -0.15 -3.07 5.87 -20.10 -0.12 -3.18 16 5 C -0.06 -1.04 9.39 22.54 0.21 -0.83 16 6 C -0.08 -2.15 9.60 22.49 0.22 -1.93 16 7 C -0.10 -3.34 5.88 -20.03 -0.12 -3.46 16 8 C 0.49 21.64 7.88 70.40 0.55 22.20 16 9 O -0.55 -27.76 15.59 20.05 0.31 -27.45 16 10 O -0.35 -16.88 9.10 -55.96 -0.51 -17.39 16 11 C 0.22 11.97 2.56 29.85 0.08 12.05 16 12 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 13 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 14 C -0.55 -30.67 8.90 25.60 0.23 -30.45 16 15 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 16 C 0.02 0.82 5.30 84.65 0.45 1.27 16 17 N -0.92 -52.63 11.32 21.45 0.24 -52.38 16 18 Si 0.99 42.18 29.54 68.60 2.03 44.20 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 22 C -0.08 -2.54 9.20 22.49 0.21 -2.33 16 23 C -0.05 -1.16 5.91 -19.60 -0.12 -1.27 16 24 C -0.12 -2.51 8.72 71.24 0.62 -1.89 16 25 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 0.31 6.26 -2.39 -0.01 0.29 16 28 H 0.19 1.40 6.23 -2.91 -0.02 1.38 16 29 H 0.15 3.75 7.60 -2.91 -0.02 3.73 16 30 H 0.08 4.59 6.07 -2.39 -0.01 4.57 16 31 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.13 4.09 7.63 -2.91 -0.02 4.07 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.09 1.99 5.84 -2.39 -0.01 1.97 16 37 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -71.07 318.17 6.91 -64.16 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.09 Total: 10.28 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.79 Total: -10.50 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.24 Total: -52.38 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -0.24 Total: -55.76 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -71.07 6.91 -64.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122701903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.506 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds