Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35755 * 119.99915 * 2 1 4 4 C 1.41526 * 119.99820 * 189.83699 * 3 2 1 5 5 C 1.38005 * 126.10640 * 218.81235 * 4 3 2 6 6 C 1.40287 * 106.52479 * 179.77108 * 5 4 3 7 7 C 1.35177 * 107.20646 * 0.40862 * 6 5 4 8 8 O 1.34003 * 109.04595 * 359.57945 * 7 6 5 9 9 C 1.41290 * 119.99757 * 179.97438 * 2 1 3 10 10 O 1.21708 * 119.99849 * 186.75385 * 9 2 1 11 11 O 1.34999 * 120.00341 * 6.76023 * 9 2 1 12 12 C 1.42901 * 117.00017 * 179.97438 * 11 9 2 13 13 H 1.09000 * 109.47180 * 330.00600 * 12 11 9 14 14 C 1.50695 * 109.47071 * 210.00001 * 12 11 9 15 15 H 1.07999 * 120.00010 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99819 * 180.02562 * 14 12 11 17 17 N 1.31519 * 120.00225 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 120.00234 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.46984 * 90.00034 * 18 16 14 20 20 H 1.48493 * 109.47226 * 210.00259 * 18 16 14 21 21 H 1.48497 * 109.46985 * 330.00425 * 18 16 14 22 22 C 1.53006 * 109.46645 * 90.00222 * 12 11 9 23 23 C 1.52998 * 117.50119 * 8.74286 * 22 12 11 24 24 C 1.53001 * 117.49724 * 300.08642 * 22 12 11 25 25 H 1.09000 * 109.46679 * 90.00084 * 1 2 3 26 26 H 1.08999 * 109.47016 * 209.99643 * 1 2 3 27 27 H 1.08996 * 109.47008 * 330.00000 * 1 2 3 28 28 H 1.07995 * 120.00098 * 9.84137 * 3 2 1 29 29 H 1.07996 * 126.73674 * 0.02562 * 5 4 3 30 30 H 1.07993 * 126.39369 * 180.25782 * 6 5 4 31 31 H 1.07999 * 125.47471 * 179.84904 * 7 6 5 32 32 H 0.96998 * 120.00282 * 180.02562 * 17 16 14 33 33 H 1.08998 * 115.54891 * 154.41506 * 22 12 11 34 34 H 1.09005 * 117.49835 * 0.02562 * 23 22 12 35 35 H 1.09002 * 117.49790 * 145.01833 * 23 22 12 36 36 H 1.09001 * 117.49561 * 214.97921 * 24 22 12 37 37 H 1.08994 * 117.49960 * 0.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 3.5855 1.1847 -0.2094 5 6 4.4987 1.9957 0.4330 6 6 5.7605 1.6606 -0.0803 7 6 5.5725 0.6883 -1.0004 8 8 4.2654 0.4020 -1.0732 9 6 2.2135 -1.2236 0.0005 10 8 3.4242 -1.2273 0.1245 11 8 1.5455 -2.3888 -0.1366 12 6 2.3234 -3.5875 -0.1278 13 1 3.3145 -3.3804 -0.5315 14 6 1.6445 -4.6331 -0.9743 15 1 0.7124 -4.4050 -1.4698 16 6 2.2133 -5.8811 -1.1161 17 7 1.6206 -6.7939 -1.8545 18 14 3.8259 -6.2754 -0.2597 19 1 3.5471 -6.8294 1.0897 20 1 4.5794 -7.2746 -1.0590 21 1 4.6329 -5.0358 -0.1288 22 6 2.4545 -4.0998 1.3080 23 6 1.6093 -3.4134 2.3829 24 6 3.1205 -3.1760 2.3297 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6578 2.1041 0.1599 29 1 4.2845 2.7393 1.1864 30 1 6.7053 2.0993 0.2045 31 1 6.3511 0.2150 -1.5803 32 1 2.0205 -7.6719 -1.9540 33 1 2.6264 -5.1712 1.4110 34 1 0.9596 -2.5971 2.0672 35 1 1.2255 -4.0332 3.1933 36 1 3.7304 -3.6397 3.1050 37 1 3.4650 -2.2031 1.9791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123370398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = -14.989082 kcal Electronic energy + Delta-G solvation = -22003.904701 eV Core-core repulsion = 18715.229200 eV Total energy + Delta-G solvation = -3288.675501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27168 -40.14931 -37.18667 -35.09446 -34.72154 -32.78430 -32.71614 -30.39961 -28.64099 -26.29668 -24.40869 -22.62858 -21.76445 -21.51236 -21.02031 -19.92369 -18.81887 -17.69266 -16.70336 -16.39045 -16.17711 -15.72177 -15.46255 -14.80605 -13.99051 -13.83005 -13.59363 -13.25111 -12.91002 -12.75647 -12.69179 -12.44170 -12.33628 -11.99227 -11.75361 -11.65063 -11.35869 -10.92192 -10.74482 -10.18811 -10.06783 -9.84936 -9.80154 -9.57096 -9.54093 -9.25800 -8.76485 -8.64458 -7.79877 -6.21143 -4.22822 0.58658 2.23638 2.78027 3.18906 3.30823 3.31577 3.38992 3.51978 3.69556 4.29097 4.57075 4.76609 5.05812 5.07669 5.11444 5.19650 5.26608 5.55193 5.56636 5.71279 5.72073 5.76368 5.80386 5.92811 6.00625 6.11671 6.20280 6.25507 6.29749 6.48380 6.53454 6.66418 6.76351 6.82284 6.89984 7.34401 7.37264 7.54058 8.24471 8.63268 8.86756 9.36719 10.90667 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.006348 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.341204 B = 4409.841906 C = 4831.237042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C -0.018 4.018 4 C 0.013 3.987 5 C -0.185 4.185 6 C -0.228 4.228 7 C -0.015 4.015 8 O -0.133 6.133 9 C 0.482 3.518 10 O -0.496 6.496 11 O -0.326 6.326 12 C 0.223 3.777 13 H 0.049 0.951 14 C -0.517 4.517 15 H 0.087 0.913 16 C 0.081 3.919 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.257 1.257 22 C -0.164 4.164 23 C -0.171 4.171 24 C -0.206 4.206 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.197 0.803 32 H 0.269 0.731 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 16.723 5.201 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.037 4.037 4 C -0.038 4.038 5 C -0.204 4.204 6 C -0.247 4.247 7 C -0.085 4.085 8 O -0.026 6.026 9 C 0.328 3.672 10 O -0.388 6.388 11 O -0.241 6.241 12 C 0.168 3.832 13 H 0.067 0.933 14 C -0.554 4.554 15 H 0.105 0.895 16 C -0.122 4.122 17 N -0.525 5.525 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.216 1.216 21 H -0.181 1.181 22 C -0.182 4.182 23 C -0.208 4.208 24 C -0.243 4.243 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.214 0.786 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.026 16.239 4.961 17.247 hybrid contribution 1.180 -0.512 0.731 1.480 sum 4.206 15.727 5.692 17.246 Atomic orbital electron populations 1.20770 0.89228 1.03443 1.03291 1.20619 0.97787 0.91131 1.04079 1.20483 0.88971 0.97798 0.96400 1.19558 0.92791 0.94032 0.97407 1.22087 0.92258 1.02693 1.03345 1.21576 0.98829 1.02565 1.01758 1.24162 0.83694 0.99017 1.01672 1.84305 1.18412 1.49696 1.50237 1.19739 0.86497 0.86180 0.74744 1.90842 1.14980 1.87946 1.45015 1.86246 1.41930 1.14829 1.81135 1.20026 0.92931 0.79480 0.90760 0.93320 1.20725 1.10502 0.95153 1.29042 0.89462 1.24716 0.97099 0.95558 0.94869 1.69842 1.39157 1.04888 1.38635 0.87056 0.84444 0.79192 0.79245 1.20116 1.21568 1.18073 1.23461 1.03314 0.98174 0.93255 1.22745 0.93259 1.03565 1.01188 1.23247 0.95250 1.02731 1.03081 0.90135 0.90141 0.91342 0.82484 0.83558 0.83765 0.78621 0.92130 0.87638 0.88955 0.89735 0.90135 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.76 36.01 0.35 -1.00 16 2 C -0.13 -2.07 5.89 -104.35 -0.61 -2.69 16 3 C -0.02 -0.24 9.58 -39.22 -0.38 -0.61 16 4 C 0.01 0.19 5.34 -38.42 -0.21 -0.01 16 5 C -0.18 -2.43 10.90 -38.90 -0.42 -2.85 16 6 C -0.23 -2.92 10.87 -39.90 -0.43 -3.36 16 7 C -0.01 -0.21 12.06 29.64 0.36 0.14 16 8 O -0.13 -2.33 7.81 -20.10 -0.16 -2.49 16 9 C 0.48 9.73 6.33 31.89 0.20 9.93 16 10 O -0.50 -10.85 9.51 -27.69 -0.26 -11.12 16 11 O -0.33 -7.43 7.46 -41.32 -0.31 -7.74 16 12 C 0.22 5.66 1.96 -27.88 -0.05 5.60 16 13 H 0.05 1.33 6.17 -51.93 -0.32 1.01 16 14 C -0.52 -14.88 9.47 -34.44 -0.33 -15.21 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 16 C 0.08 2.33 5.44 -17.82 -0.10 2.24 16 17 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 18 Si 0.87 21.88 24.48 -169.99 -4.16 17.72 16 19 H -0.27 -6.64 6.72 56.52 0.38 -6.26 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 22 C -0.16 -3.81 4.45 -90.62 -0.40 -4.22 16 23 C -0.17 -3.37 9.79 -26.70 -0.26 -3.63 16 24 C -0.21 -4.20 9.84 -26.70 -0.26 -4.46 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.11 2.58 4.39 -51.93 -0.23 2.35 16 34 H 0.09 1.77 6.93 -51.93 -0.36 1.41 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.10 2.15 5.32 -51.93 -0.28 1.87 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -33.23 306.84 -6.61 -39.84 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.57 Total: 5.35 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.55 Total: -20.13 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.73 Total: -21.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.16 Total: 17.72 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.23 -6.61 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.850 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds