Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35755 * 119.99915 * 2 1 4 4 C 1.41526 * 119.99820 * 189.83699 * 3 2 1 5 5 C 1.38005 * 126.10640 * 218.81235 * 4 3 2 6 6 C 1.40287 * 106.52479 * 179.77108 * 5 4 3 7 7 C 1.35177 * 107.20646 * 0.40862 * 6 5 4 8 8 O 1.34003 * 109.04595 * 359.57945 * 7 6 5 9 9 C 1.41290 * 119.99757 * 179.97438 * 2 1 3 10 10 O 1.21708 * 119.99849 * 186.75385 * 9 2 1 11 11 O 1.34999 * 120.00341 * 6.76023 * 9 2 1 12 12 C 1.42901 * 117.00017 * 179.97438 * 11 9 2 13 13 H 1.09000 * 109.47180 * 330.00600 * 12 11 9 14 14 C 1.50695 * 109.47071 * 210.00001 * 12 11 9 15 15 H 1.07999 * 120.00010 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99819 * 180.02562 * 14 12 11 17 17 N 1.31519 * 120.00225 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 120.00234 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.46984 * 90.00034 * 18 16 14 20 20 H 1.48493 * 109.47226 * 210.00259 * 18 16 14 21 21 H 1.48497 * 109.46985 * 330.00425 * 18 16 14 22 22 C 1.53006 * 109.46645 * 90.00222 * 12 11 9 23 23 C 1.52998 * 117.50119 * 8.74286 * 22 12 11 24 24 C 1.53001 * 117.49724 * 300.08642 * 22 12 11 25 25 H 1.09000 * 109.46679 * 90.00084 * 1 2 3 26 26 H 1.08999 * 109.47016 * 209.99643 * 1 2 3 27 27 H 1.08996 * 109.47008 * 330.00000 * 1 2 3 28 28 H 1.07995 * 120.00098 * 9.84137 * 3 2 1 29 29 H 1.07996 * 126.73674 * 0.02562 * 5 4 3 30 30 H 1.07993 * 126.39369 * 180.25782 * 6 5 4 31 31 H 1.07999 * 125.47471 * 179.84904 * 7 6 5 32 32 H 0.96998 * 120.00282 * 180.02562 * 17 16 14 33 33 H 1.08998 * 115.54891 * 154.41506 * 22 12 11 34 34 H 1.09005 * 117.49835 * 0.02562 * 23 22 12 35 35 H 1.09002 * 117.49790 * 145.01833 * 23 22 12 36 36 H 1.09001 * 117.49561 * 214.97921 * 24 22 12 37 37 H 1.08994 * 117.49960 * 0.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 3.5855 1.1847 -0.2094 5 6 4.4987 1.9957 0.4330 6 6 5.7605 1.6606 -0.0803 7 6 5.5725 0.6883 -1.0004 8 8 4.2654 0.4020 -1.0732 9 6 2.2135 -1.2236 0.0005 10 8 3.4242 -1.2273 0.1245 11 8 1.5455 -2.3888 -0.1366 12 6 2.3234 -3.5875 -0.1278 13 1 3.3145 -3.3804 -0.5315 14 6 1.6445 -4.6331 -0.9743 15 1 0.7124 -4.4050 -1.4698 16 6 2.2133 -5.8811 -1.1161 17 7 1.6206 -6.7939 -1.8545 18 14 3.8259 -6.2754 -0.2597 19 1 3.5471 -6.8294 1.0897 20 1 4.5794 -7.2746 -1.0590 21 1 4.6329 -5.0358 -0.1288 22 6 2.4545 -4.0998 1.3080 23 6 1.6093 -3.4134 2.3829 24 6 3.1205 -3.1760 2.3297 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6578 2.1041 0.1599 29 1 4.2845 2.7393 1.1864 30 1 6.7053 2.0993 0.2045 31 1 6.3511 0.2150 -1.5803 32 1 2.0205 -7.6719 -1.9540 33 1 2.6264 -5.1712 1.4110 34 1 0.9596 -2.5971 2.0672 35 1 1.2255 -4.0332 3.1933 36 1 3.7304 -3.6397 3.1050 37 1 3.4650 -2.2031 1.9791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123370398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = -34.761847 kcal Electronic energy + Delta-G solvation = -22004.762112 eV Core-core repulsion = 18715.229200 eV Total energy + Delta-G solvation = -3289.532912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.37150 -41.73448 -38.77633 -36.71446 -35.97831 -34.91980 -33.85175 -31.54464 -30.56197 -27.28951 -25.94851 -24.49594 -23.33539 -22.66295 -22.24746 -21.50250 -20.28913 -19.07434 -18.58102 -18.02221 -17.86373 -16.99890 -16.85724 -16.30401 -15.63505 -15.21992 -14.86983 -14.80654 -14.49420 -14.05121 -13.76442 -13.70215 -13.48374 -13.44368 -13.35174 -13.19059 -12.78393 -12.72952 -12.44417 -12.14273 -11.93185 -11.47102 -11.41439 -11.04442 -10.90274 -10.77790 -10.65437 -10.58275 -8.87944 -8.46133 -6.53312 -0.55368 1.10963 1.18625 1.26501 1.39156 1.72059 2.08828 2.16385 2.18807 2.43099 2.82056 2.96476 3.75799 3.85052 3.91780 3.98947 4.09020 4.11818 4.15831 4.30280 4.43680 4.60974 4.67794 4.77199 4.80790 4.86938 4.96070 4.98564 5.05401 5.09063 5.13417 5.19489 5.24486 5.36894 5.46197 5.67476 5.71993 6.16551 6.29208 6.49689 6.95653 7.13228 8.69715 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.006348 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.341204 B = 4409.841906 C = 4831.237042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.177 4.177 3 C 0.022 3.978 4 C -0.031 4.031 5 C -0.169 4.169 6 C -0.228 4.228 7 C -0.036 4.036 8 O -0.172 6.172 9 C 0.475 3.525 10 O -0.521 6.521 11 O -0.341 6.341 12 C 0.234 3.766 13 H 0.022 0.978 14 C -0.531 4.531 15 H 0.046 0.954 16 C 0.033 3.967 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.254 1.254 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.199 4.199 23 C -0.151 4.151 24 C -0.187 4.187 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.211 0.789 29 H 0.181 0.819 30 H 0.174 0.826 31 H 0.215 0.785 32 H 0.274 0.726 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 19.175 7.618 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.178 4.178 3 C 0.005 3.995 4 C -0.081 4.081 5 C -0.188 4.188 6 C -0.246 4.246 7 C -0.106 4.106 8 O -0.067 6.067 9 C 0.324 3.676 10 O -0.413 6.413 11 O -0.257 6.257 12 C 0.179 3.821 13 H 0.039 0.961 14 C -0.568 4.568 15 H 0.064 0.936 16 C -0.166 4.166 17 N -0.568 5.568 18 Si 0.761 3.239 19 H -0.179 1.179 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.217 4.217 23 C -0.187 4.187 24 C -0.224 4.224 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.228 0.772 29 H 0.198 0.802 30 H 0.192 0.808 31 H 0.232 0.768 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.042 18.713 7.388 20.520 hybrid contribution 0.934 -1.094 -0.099 1.442 sum 4.977 17.619 7.289 19.706 Atomic orbital electron populations 1.20747 0.87165 1.04440 1.03478 1.20687 0.99194 0.89482 1.08433 1.21183 0.88124 0.98779 0.91458 1.20222 0.94170 0.94970 0.98705 1.22584 0.91734 1.01875 1.02630 1.22016 1.00121 1.01744 1.00746 1.24816 0.83295 0.99809 1.02652 1.84279 1.19839 1.51067 1.51537 1.20601 0.86685 0.86449 0.73873 1.90815 1.15953 1.88082 1.46475 1.86225 1.42126 1.15235 1.82117 1.19493 0.91052 0.79827 0.91729 0.96067 1.20918 1.09339 0.96770 1.29806 0.93577 1.25496 1.00566 0.95202 0.95379 1.69962 1.41110 1.05594 1.40130 0.86025 0.79888 0.78854 0.79092 1.17919 1.20757 1.18325 1.23194 1.07759 0.98037 0.92744 1.22878 0.93143 1.02925 0.99796 1.23238 0.96071 1.01307 1.01755 0.90414 0.92297 0.87117 0.77203 0.80210 0.80848 0.76815 0.91621 0.88686 0.88774 0.87023 0.87575 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 9.76 71.24 0.70 -1.65 16 2 C -0.18 -5.26 5.89 -19.69 -0.12 -5.37 16 3 C 0.02 0.52 9.58 22.50 0.22 0.73 16 4 C -0.03 -0.89 5.34 23.03 0.12 -0.77 16 5 C -0.17 -3.88 10.90 22.71 0.25 -3.63 16 6 C -0.23 -5.22 10.87 22.06 0.24 -4.98 16 7 C -0.04 -1.00 12.06 67.11 0.81 -0.19 16 8 O -0.17 -6.02 7.81 17.65 0.14 -5.88 16 9 C 0.48 19.54 6.33 68.57 0.43 19.97 16 10 O -0.52 -23.18 9.51 27.06 0.26 -22.93 16 11 O -0.34 -16.21 7.46 -59.18 -0.44 -16.65 16 12 C 0.23 12.36 1.96 29.85 0.06 12.41 16 13 H 0.02 1.23 6.17 -2.39 -0.01 1.22 16 14 C -0.53 -32.26 9.47 25.60 0.24 -32.02 16 15 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 16 C 0.03 1.99 5.44 84.65 0.46 2.45 16 17 N -0.93 -58.17 13.96 21.45 0.30 -57.87 16 18 Si 0.94 46.15 24.48 68.60 1.68 47.83 16 19 H -0.25 -11.61 6.72 99.48 0.67 -10.94 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.26 -12.76 6.53 99.48 0.65 -12.11 16 22 C -0.20 -9.23 4.45 -10.79 -0.05 -9.28 16 23 C -0.15 -5.71 9.79 30.62 0.30 -5.41 16 24 C -0.19 -7.28 9.84 30.62 0.30 -6.98 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.58 7.68 -2.39 -0.02 1.57 16 27 H 0.11 1.53 8.08 -2.39 -0.02 1.52 16 28 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.22 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.10 4.58 4.39 -2.39 -0.01 4.57 16 34 H 0.09 3.53 6.93 -2.38 -0.02 3.51 16 35 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.09 3.78 5.32 -2.39 -0.01 3.76 16 Total: -1.00 -77.10 306.84 6.88 -70.22 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.99 Total: 19.99 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 3.96 Total: -34.72 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.05 Total: -45.45 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.68 Total: 47.83 kcal Total: -77.10 6.88 -70.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.458 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds