Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35753 * 119.99582 * 2 1 4 4 C 1.41528 * 120.00096 * 5.74237 * 3 2 1 5 5 C 1.38009 * 126.10484 * 185.33796 * 4 3 2 6 6 C 1.40285 * 106.52343 * 179.88339 * 5 4 3 7 7 C 1.35179 * 107.20907 * 0.37422 * 6 5 4 8 8 O 1.34004 * 109.04588 * 359.76684 * 7 6 5 9 9 C 1.41287 * 120.00241 * 179.97438 * 2 1 3 10 10 O 1.21713 * 119.99717 * 180.27543 * 9 2 1 11 11 O 1.35001 * 120.00252 * 0.02562 * 9 2 1 12 12 C 1.42894 * 117.00201 * 179.97438 * 11 9 2 13 13 H 1.09007 * 109.46978 * 30.00147 * 12 11 9 14 14 C 1.50701 * 109.47183 * 149.99767 * 12 11 9 15 15 H 1.08000 * 119.99565 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00236 * 180.02562 * 14 12 11 17 17 N 1.31513 * 119.99466 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99811 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47166 * 60.00265 * 18 16 14 20 20 H 1.48504 * 109.46878 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47526 * 299.99433 * 18 16 14 22 22 C 1.53000 * 109.47252 * 269.99809 * 12 11 9 23 23 C 1.52999 * 117.49867 * 128.74761 * 22 12 11 24 24 C 1.52999 * 117.49788 * 60.08868 * 22 12 11 25 25 H 1.09006 * 109.46901 * 174.76303 * 1 2 3 26 26 H 1.08999 * 109.47246 * 294.75172 * 1 2 3 27 27 H 1.08996 * 109.47250 * 54.76111 * 1 2 3 28 28 H 1.07999 * 119.99753 * 185.73820 * 3 2 1 29 29 H 1.07997 * 126.73623 * 0.02562 * 5 4 3 30 30 H 1.07996 * 126.39532 * 180.14428 * 6 5 4 31 31 H 1.08006 * 125.47634 * 179.73759 * 7 6 5 32 32 H 0.97005 * 119.99692 * 180.02562 * 17 16 14 33 33 H 1.08996 * 115.55103 * 274.41971 * 22 12 11 34 34 H 1.09010 * 117.49905 * 0.02562 * 23 22 12 35 35 H 1.09001 * 117.49944 * 145.01878 * 23 22 12 36 36 H 1.08998 * 117.49569 * 214.97702 * 24 22 12 37 37 H 1.09000 * 117.49823 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1757 0.0000 4 6 1.4833 2.3983 0.1226 5 6 2.0297 3.6625 0.0343 6 6 0.9727 4.5674 0.2131 7 6 -0.1491 3.8386 0.4074 8 8 0.1607 2.5360 0.3525 9 6 2.2135 -1.2236 0.0005 10 8 3.4306 -1.2234 0.0056 11 8 1.5386 -2.3928 0.0005 12 6 2.3169 -3.5911 0.0005 13 1 3.2612 -3.4110 0.5144 14 6 1.5586 -4.6826 0.7110 15 1 0.5800 -4.4813 1.1211 16 6 2.1142 -5.9382 0.8375 17 7 3.3057 -6.1833 0.3376 18 14 1.1739 -7.2912 1.7175 19 1 -0.1120 -7.5369 1.0165 20 1 1.9828 -8.5366 1.7176 21 1 0.9033 -6.8761 3.1173 22 6 2.5947 -4.0189 -1.4419 23 6 4.0468 -4.3115 -1.8248 24 6 3.3619 -3.0405 -2.3336 25 1 -0.3633 -1.0234 -0.0938 26 1 -0.3634 0.4303 0.9332 27 1 -0.3633 0.5929 -0.8393 28 1 3.2616 1.1781 -0.0935 29 1 3.0670 3.9071 -0.1406 30 1 1.0429 5.6450 0.2017 31 1 -1.1363 4.2415 0.5796 32 1 3.6964 -7.0667 0.4262 33 1 1.8189 -4.6244 -1.9104 34 1 4.8043 -4.1996 -1.0489 35 1 4.2263 -5.1093 -2.5455 36 1 3.0911 -3.0028 -3.3887 37 1 3.6684 -2.0920 -1.8927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123370399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -31.580905 kcal Electronic energy + Delta-G solvation = -21068.968272 eV Core-core repulsion = 17779.573296 eV Total energy + Delta-G solvation = -3289.394976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.67099 -39.89680 -36.78275 -35.02083 -34.82111 -33.26409 -32.61141 -30.14803 -27.80513 -26.69323 -24.39150 -22.89736 -21.89977 -21.22692 -20.94435 -19.51175 -18.87318 -17.11686 -16.71679 -16.48026 -16.24063 -15.78837 -15.23034 -14.73649 -14.55089 -13.88687 -13.32635 -13.13693 -13.02123 -12.88949 -12.62794 -12.42778 -12.09239 -11.61643 -11.45124 -11.30879 -11.02924 -10.90847 -10.50770 -10.35587 -10.25709 -9.90064 -9.79400 -9.73158 -9.31177 -8.99029 -8.60058 -8.38856 -7.90670 -6.11568 -4.19524 0.42711 2.02519 2.63293 2.86928 3.29059 3.32799 3.34681 3.62123 3.77291 4.37643 4.70572 4.79110 4.91885 5.07077 5.10854 5.21126 5.44308 5.54933 5.63020 5.84959 5.88220 5.91746 5.98501 6.06209 6.17822 6.20609 6.38752 6.41943 6.58417 6.65430 6.75162 6.96455 7.03858 7.19854 7.30581 7.42994 7.65763 7.88277 8.14086 8.64495 8.92752 9.45067 10.95177 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.004179 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.348483 B = 6698.624860 C = 7349.993350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.127 4.127 3 C -0.026 4.026 4 C 0.011 3.989 5 C -0.177 4.177 6 C -0.217 4.217 7 C -0.034 4.034 8 O -0.156 6.156 9 C 0.493 3.507 10 O -0.517 6.517 11 O -0.337 6.337 12 C 0.244 3.756 13 H 0.047 0.953 14 C -0.528 4.528 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.873 5.873 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.230 4.230 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.203 0.797 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 17.204 -1.684 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.128 4.128 3 C -0.044 4.044 4 C -0.038 4.038 5 C -0.196 4.196 6 C -0.236 4.236 7 C -0.104 4.104 8 O -0.051 6.051 9 C 0.340 3.660 10 O -0.410 6.410 11 O -0.252 6.252 12 C 0.191 3.809 13 H 0.065 0.935 14 C -0.565 4.565 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.509 5.509 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.134 4.134 23 C -0.161 4.161 24 C -0.267 4.267 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.220 0.780 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.569 16.721 -1.671 17.415 hybrid contribution -0.154 -0.660 0.308 0.744 sum -4.722 16.061 -1.363 16.797 Atomic orbital electron populations 1.20866 0.89803 1.04153 1.02294 1.20567 0.97694 0.91348 1.03187 1.20555 0.99672 0.87505 0.96715 1.19805 0.81066 0.95139 1.07837 1.22301 1.00760 0.91012 1.05554 1.21732 0.92650 1.00859 1.08388 1.24317 1.00663 0.80496 1.04879 1.84335 1.25032 1.27094 1.68645 1.19496 0.86326 0.86109 0.74112 1.90808 1.15031 1.88818 1.46378 1.86199 1.42442 1.15109 1.81474 1.19813 0.92312 0.77379 0.91430 0.93523 1.20877 1.04381 0.94197 1.37086 0.91388 1.24876 0.95084 0.98200 0.95343 1.70042 1.14937 1.22265 1.43623 0.86431 0.79655 0.80492 0.80091 1.20038 1.21147 1.20071 1.22634 0.94783 0.99974 0.96002 1.22356 0.96568 0.95680 1.01457 1.23280 1.08975 0.96000 0.98459 0.89651 0.90660 0.91115 0.82196 0.82835 0.83250 0.78016 0.92624 0.89385 0.89349 0.90860 0.91090 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 8.30 36.01 0.30 -1.38 16 2 C -0.13 -2.13 5.89 -104.35 -0.61 -2.75 16 3 C -0.03 -0.38 9.38 -39.22 -0.37 -0.74 16 4 C 0.01 0.14 6.68 -38.41 -0.26 -0.12 16 5 C -0.18 -1.88 10.90 -38.90 -0.42 -2.30 16 6 C -0.22 -1.94 10.87 -39.90 -0.43 -2.38 16 7 C -0.03 -0.30 12.06 29.64 0.36 0.05 16 8 O -0.16 -1.85 7.35 4.69 0.03 -1.81 16 9 C 0.49 10.47 6.83 31.89 0.22 10.69 16 10 O -0.52 -11.94 13.19 -19.43 -0.26 -12.20 16 11 O -0.34 -8.04 8.55 -41.32 -0.35 -8.39 16 12 C 0.24 6.48 2.21 -27.88 -0.06 6.42 16 13 H 0.05 1.38 6.87 -51.93 -0.36 1.02 16 14 C -0.53 -14.74 8.86 -34.44 -0.31 -15.04 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 17 N -0.87 -24.36 11.43 55.43 0.63 -23.73 16 18 Si 0.91 21.05 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.11 -2.86 4.47 -90.62 -0.40 -3.26 16 23 C -0.12 -2.89 9.04 -26.69 -0.24 -3.13 16 24 C -0.23 -5.06 9.79 -26.69 -0.26 -5.32 16 25 H 0.08 1.36 7.06 -51.93 -0.37 0.99 16 26 H 0.07 1.02 7.19 -51.93 -0.37 0.64 16 27 H 0.07 0.92 7.50 -51.93 -0.39 0.53 16 28 H 0.16 2.21 7.47 -52.49 -0.39 1.81 16 29 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.20 0.97 8.06 -52.48 -0.42 0.54 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 34 H 0.09 2.21 8.05 -51.92 -0.42 1.79 16 35 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.09 2.10 5.34 -51.93 -0.28 1.83 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -30.63 316.13 -7.44 -38.07 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.65 Total: 4.74 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.59 Total: -17.47 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.63 Total: -23.73 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.58 Total: -22.41 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.63 -7.44 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.489 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds