Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35753 * 119.99582 * 2 1 4 4 C 1.41528 * 120.00096 * 5.74237 * 3 2 1 5 5 C 1.38009 * 126.10484 * 185.33796 * 4 3 2 6 6 C 1.40285 * 106.52343 * 179.88339 * 5 4 3 7 7 C 1.35179 * 107.20907 * 0.37422 * 6 5 4 8 8 O 1.34004 * 109.04588 * 359.76684 * 7 6 5 9 9 C 1.41287 * 120.00241 * 179.97438 * 2 1 3 10 10 O 1.21713 * 119.99717 * 180.27543 * 9 2 1 11 11 O 1.35001 * 120.00252 * 0.02562 * 9 2 1 12 12 C 1.42894 * 117.00201 * 179.97438 * 11 9 2 13 13 H 1.09007 * 109.46978 * 30.00147 * 12 11 9 14 14 C 1.50701 * 109.47183 * 149.99767 * 12 11 9 15 15 H 1.08000 * 119.99565 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00236 * 180.02562 * 14 12 11 17 17 N 1.31513 * 119.99466 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99811 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47166 * 60.00265 * 18 16 14 20 20 H 1.48504 * 109.46878 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47526 * 299.99433 * 18 16 14 22 22 C 1.53000 * 109.47252 * 269.99809 * 12 11 9 23 23 C 1.52999 * 117.49867 * 128.74761 * 22 12 11 24 24 C 1.52999 * 117.49788 * 60.08868 * 22 12 11 25 25 H 1.09006 * 109.46901 * 174.76303 * 1 2 3 26 26 H 1.08999 * 109.47246 * 294.75172 * 1 2 3 27 27 H 1.08996 * 109.47250 * 54.76111 * 1 2 3 28 28 H 1.07999 * 119.99753 * 185.73820 * 3 2 1 29 29 H 1.07997 * 126.73623 * 0.02562 * 5 4 3 30 30 H 1.07996 * 126.39532 * 180.14428 * 6 5 4 31 31 H 1.08006 * 125.47634 * 179.73759 * 7 6 5 32 32 H 0.97005 * 119.99692 * 180.02562 * 17 16 14 33 33 H 1.08996 * 115.55103 * 274.41971 * 22 12 11 34 34 H 1.09010 * 117.49905 * 0.02562 * 23 22 12 35 35 H 1.09001 * 117.49944 * 145.01878 * 23 22 12 36 36 H 1.08998 * 117.49569 * 214.97702 * 24 22 12 37 37 H 1.09000 * 117.49823 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1757 0.0000 4 6 1.4833 2.3983 0.1226 5 6 2.0297 3.6625 0.0343 6 6 0.9727 4.5674 0.2131 7 6 -0.1491 3.8386 0.4074 8 8 0.1607 2.5360 0.3525 9 6 2.2135 -1.2236 0.0005 10 8 3.4306 -1.2234 0.0056 11 8 1.5386 -2.3928 0.0005 12 6 2.3169 -3.5911 0.0005 13 1 3.2612 -3.4110 0.5144 14 6 1.5586 -4.6826 0.7110 15 1 0.5800 -4.4813 1.1211 16 6 2.1142 -5.9382 0.8375 17 7 3.3057 -6.1833 0.3376 18 14 1.1739 -7.2912 1.7175 19 1 -0.1120 -7.5369 1.0165 20 1 1.9828 -8.5366 1.7176 21 1 0.9033 -6.8761 3.1173 22 6 2.5947 -4.0189 -1.4419 23 6 4.0468 -4.3115 -1.8248 24 6 3.3619 -3.0405 -2.3336 25 1 -0.3633 -1.0234 -0.0938 26 1 -0.3634 0.4303 0.9332 27 1 -0.3633 0.5929 -0.8393 28 1 3.2616 1.1781 -0.0935 29 1 3.0670 3.9071 -0.1406 30 1 1.0429 5.6450 0.2017 31 1 -1.1363 4.2415 0.5796 32 1 3.6964 -7.0667 0.4262 33 1 1.8189 -4.6244 -1.9104 34 1 4.8043 -4.1996 -1.0489 35 1 4.2263 -5.1093 -2.5455 36 1 3.0911 -3.0028 -3.3887 37 1 3.6684 -2.0920 -1.8927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123370399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -47.666135 kcal Electronic energy + Delta-G solvation = -21069.665780 eV Core-core repulsion = 17779.573296 eV Total energy + Delta-G solvation = -3290.092484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.50615 -41.59289 -38.53672 -36.78847 -36.18696 -34.69939 -34.08368 -31.20635 -29.74175 -27.76222 -25.98398 -24.66289 -23.07906 -22.69454 -22.16907 -21.22694 -20.33268 -18.80284 -18.25764 -17.71031 -17.39116 -17.22862 -16.92005 -16.49290 -15.82966 -15.54992 -14.96068 -14.63459 -14.04167 -13.87703 -13.74739 -13.64826 -13.46031 -13.28838 -13.10786 -12.96244 -12.77586 -12.69777 -12.27616 -12.15397 -11.78276 -11.49723 -11.41704 -11.22045 -10.93487 -10.71547 -10.58186 -10.41942 -8.87963 -8.20246 -6.37460 -0.71303 1.11410 1.42323 1.45584 1.53028 1.68116 2.04163 2.15407 2.22449 2.47452 3.06779 3.24728 3.85109 3.91115 4.01655 4.10184 4.12004 4.15242 4.30962 4.45347 4.50679 4.64508 4.77624 4.79934 4.83931 4.90533 4.99896 5.06321 5.11478 5.16799 5.26826 5.39598 5.45521 5.49874 5.56595 5.60111 5.86165 6.13431 6.15285 6.64997 7.01152 7.32595 8.86003 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.004179 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.348483 B = 6698.624860 C = 7349.993350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.184 4.184 3 C 0.025 3.975 4 C -0.042 4.042 5 C -0.150 4.150 6 C -0.230 4.230 7 C -0.011 4.011 8 O -0.171 6.171 9 C 0.492 3.508 10 O -0.551 6.551 11 O -0.349 6.349 12 C 0.250 3.750 13 H 0.005 0.995 14 C -0.558 4.558 15 H 0.062 0.938 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.975 3.025 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.201 4.201 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.245 0.755 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 19.643 -1.962 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.185 4.185 3 C 0.006 3.994 4 C -0.091 4.091 5 C -0.169 4.169 6 C -0.248 4.248 7 C -0.080 4.080 8 O -0.066 6.066 9 C 0.342 3.658 10 O -0.446 6.446 11 O -0.265 6.265 12 C 0.197 3.803 13 H 0.023 0.977 14 C -0.595 4.595 15 H 0.080 0.920 16 C -0.177 4.177 17 N -0.530 5.530 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.178 0.822 29 H 0.190 0.810 30 H 0.198 0.802 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.843 19.178 -1.955 20.144 hybrid contribution 0.253 -1.018 0.425 1.131 sum -5.590 18.161 -1.531 19.063 Atomic orbital electron populations 1.20686 0.88441 1.02936 1.03226 1.20369 0.98598 0.89804 1.09766 1.20674 0.99771 0.87707 0.91199 1.19629 0.81950 0.94917 1.12566 1.22775 1.02165 0.90470 1.01483 1.22170 0.91887 1.02311 1.08459 1.25334 1.02484 0.79306 1.00830 1.84326 1.24615 1.28820 1.68875 1.20189 0.86307 0.86381 0.72911 1.90769 1.16229 1.89007 1.48602 1.86182 1.42479 1.15464 1.82329 1.19439 0.90549 0.78329 0.92026 0.97736 1.21167 1.04543 0.95440 1.38374 0.91960 1.25722 0.95957 1.00202 0.95773 1.70161 1.16016 1.22824 1.44019 0.85372 0.78531 0.77413 0.78863 1.19169 1.20251 1.19647 1.22448 0.95251 1.01821 0.95719 1.22270 0.95066 0.97215 1.01248 1.23270 1.06304 0.94768 0.99463 0.91929 0.89976 0.89800 0.82176 0.81018 0.80238 0.73937 0.92397 0.90294 0.91691 0.89239 0.87911 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.89 8.30 71.24 0.59 -2.30 16 2 C -0.18 -6.42 5.89 -19.69 -0.12 -6.53 16 3 C 0.02 0.71 9.38 22.50 0.21 0.92 16 4 C -0.04 -0.99 6.68 23.03 0.15 -0.83 16 5 C -0.15 -2.66 10.90 22.71 0.25 -2.41 16 6 C -0.23 -3.04 10.87 22.06 0.24 -2.80 16 7 C -0.01 -0.14 12.06 67.11 0.81 0.67 16 8 O -0.17 -3.60 7.35 -6.13 -0.05 -3.65 16 9 C 0.49 22.17 6.83 68.57 0.47 22.63 16 10 O -0.55 -27.03 13.19 19.14 0.25 -26.77 16 11 O -0.35 -17.73 8.55 -59.19 -0.51 -18.23 16 12 C 0.25 14.11 2.21 29.85 0.07 14.18 16 13 H 0.00 0.31 6.87 -2.38 -0.02 0.29 16 14 C -0.56 -32.56 8.86 25.60 0.23 -32.33 16 15 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 16 C 0.03 1.43 5.30 84.66 0.45 1.88 16 17 N -0.89 -51.29 11.43 21.45 0.25 -51.04 16 18 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C -0.13 -6.89 4.47 -10.79 -0.05 -6.94 16 23 C -0.12 -5.81 9.04 30.62 0.28 -5.53 16 24 C -0.20 -8.95 9.79 30.62 0.30 -8.65 16 25 H 0.06 2.10 7.06 -2.38 -0.02 2.08 16 26 H 0.08 2.22 7.19 -2.39 -0.02 2.21 16 27 H 0.08 2.16 7.50 -2.39 -0.02 2.15 16 28 H 0.16 4.44 7.47 -2.91 -0.02 4.42 16 29 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 31 H 0.24 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 33 H 0.08 4.17 8.11 -2.39 -0.02 4.15 16 34 H 0.06 3.41 8.05 -2.38 -0.02 3.39 16 35 H 0.09 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.08 3.96 5.34 -2.39 -0.01 3.95 16 Total: -1.00 -70.08 316.13 6.93 -63.15 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.08 Total: 18.80 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.88 Total: -28.03 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.25 Total: -51.04 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.30 Total: -48.66 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.08 6.93 -63.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.488 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds