Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46913 * 177.19600 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47508 * 329.99753 * 10 9 7 12 12 C 1.50701 * 109.47336 * 209.99870 * 10 9 7 13 13 H 1.08006 * 119.99817 * 359.97438 * 12 10 9 14 14 C 1.37874 * 120.00462 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99633 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00341 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46924 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46945 * 120.00027 * 16 14 12 19 19 H 1.48494 * 109.47634 * 240.00314 * 16 14 12 20 20 C 1.50704 * 109.47348 * 90.00141 * 10 9 7 21 21 C 1.34511 * 125.79131 * 219.71605 * 20 10 9 22 22 C 1.41385 * 106.84245 * 179.88675 * 21 20 10 23 23 C 1.34514 * 106.83765 * 0.37205 * 22 21 20 24 24 O 1.34301 * 108.42535 * 359.77188 * 23 22 21 25 25 H 1.08992 * 109.47126 * 182.80617 * 1 2 3 26 26 H 1.09001 * 109.46952 * 302.80474 * 1 2 3 27 27 H 1.09000 * 109.47524 * 62.80198 * 1 2 3 28 28 H 1.08992 * 109.46866 * 57.19356 * 4 3 2 29 29 H 1.08996 * 109.46865 * 297.19486 * 4 3 2 30 30 H 1.09001 * 109.47372 * 60.00182 * 5 4 3 31 31 H 1.09004 * 109.47108 * 299.99927 * 5 4 3 32 32 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 33 33 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 34 34 H 0.97000 * 119.99970 * 179.97438 * 15 14 12 35 35 H 1.08002 * 126.57992 * 0.02722 * 21 20 10 36 36 H 1.07990 * 126.58111 * 180.16599 * 22 21 20 37 37 H 1.08002 * 125.78946 * 179.74580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6267 1.4431 -0.0706 6 6 6.1567 1.4445 -0.0699 7 6 6.6578 2.8640 -0.1401 8 8 5.8717 3.7805 -0.1854 9 8 7.9772 3.1102 -0.1522 10 6 8.3876 4.5013 -0.2203 11 1 7.6367 5.0755 -0.7629 12 6 9.7098 4.6005 -0.9365 13 1 10.1936 3.7072 -1.3033 14 6 10.3021 5.8314 -1.1234 15 7 9.7132 6.9190 -0.6763 16 14 11.9414 5.9542 -2.0104 17 1 12.3905 4.5966 -2.4107 18 1 11.7871 6.8009 -3.2206 19 1 12.9495 6.5628 -1.1058 20 6 8.5297 5.0521 1.1752 21 6 8.1587 6.2809 1.5775 22 6 8.4697 6.3727 2.9537 23 6 9.0196 5.1974 3.3081 24 8 9.0535 4.4014 2.2269 25 1 -0.3633 -1.0264 0.0503 26 1 -0.3633 0.5568 0.8638 27 1 -0.3634 0.4697 -0.9140 28 1 4.4818 -0.5546 -0.8637 29 1 4.4817 -0.4675 0.9140 30 1 4.2629 1.9995 0.7932 31 1 4.2629 1.9124 -0.9847 32 1 6.5208 0.8879 -0.9335 33 1 6.5201 0.9752 0.8443 34 1 10.1300 7.7851 -0.8074 35 1 7.7076 7.0492 0.9670 36 1 8.3014 7.2242 3.5961 37 1 9.3743 4.9380 4.2947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -42.499989 kcal Electronic energy + Delta-G solvation = -20442.094458 eV Core-core repulsion = 17152.225995 eV Total energy + Delta-G solvation = -3289.868463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34609 -39.57981 -36.26932 -35.36063 -33.36683 -33.22385 -31.71031 -30.09768 -29.34714 -26.95006 -26.38473 -23.39392 -22.17767 -20.62875 -20.05648 -19.24027 -17.38291 -16.78951 -16.63879 -16.20821 -15.86824 -15.22830 -14.76332 -14.68336 -14.43255 -13.98560 -13.77304 -13.64465 -13.14277 -12.86786 -12.51394 -12.38654 -11.87961 -11.80590 -11.56754 -11.48891 -11.23912 -11.11777 -10.97768 -10.87110 -10.36689 -10.09463 -9.85788 -9.75560 -9.65802 -9.38400 -8.82635 -8.65559 -7.25896 -6.21922 -4.39780 2.60976 2.66077 2.87156 2.93604 3.20318 3.26680 3.31169 3.55043 3.94855 4.16526 4.19352 4.29416 5.00063 5.01107 5.05925 5.15950 5.34204 5.38804 5.48404 5.51646 5.53853 5.68891 5.72333 5.83444 5.93236 6.07187 6.13424 6.30323 6.37591 6.73143 6.98705 7.15140 7.23097 7.40482 7.59575 7.69498 7.70111 7.86504 8.35980 8.52463 8.79021 9.27215 10.76938 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.003849 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.829198 B = 7273.621680 C = 7990.664325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.203 4.203 3 C -0.179 4.179 4 C -0.007 4.007 5 C -0.104 4.104 6 C -0.115 4.115 7 C 0.451 3.549 8 O -0.517 6.517 9 O -0.350 6.350 10 C 0.297 3.703 11 H 0.079 0.921 12 C -0.530 4.530 13 H 0.078 0.922 14 C 0.068 3.932 15 N -0.867 5.867 16 Si 0.914 3.086 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.026 3.974 21 C -0.179 4.179 22 C -0.218 4.218 23 C -0.089 4.089 24 O -0.177 6.177 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.268 0.732 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.743 -10.554 3.014 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.203 4.203 3 C -0.179 4.179 4 C -0.043 4.043 5 C -0.141 4.141 6 C -0.153 4.153 7 C 0.294 3.706 8 O -0.407 6.407 9 O -0.266 6.266 10 C 0.244 3.756 11 H 0.096 0.904 12 C -0.568 4.568 13 H 0.096 0.904 14 C -0.137 4.137 15 N -0.502 5.502 16 Si 0.740 3.260 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.025 4.025 21 C -0.198 4.198 22 C -0.237 4.237 23 C -0.156 4.156 24 O -0.073 6.073 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.807 -10.324 2.994 14.551 hybrid contribution 0.947 0.799 -0.144 1.247 sum -8.861 -9.525 2.850 13.318 Atomic orbital electron populations 1.18817 0.84833 1.02718 1.03002 1.22390 0.93962 1.01686 1.02275 1.22363 0.93669 1.01038 1.00859 1.18703 0.84355 0.97862 1.03398 1.21352 0.93018 0.95222 1.04525 1.21335 0.96129 0.92199 1.05599 1.23488 0.82229 0.92107 0.72748 1.90620 1.57014 1.47149 1.45882 1.86545 1.23537 1.34594 1.81906 1.19175 0.97434 0.73859 0.85172 0.90400 1.20939 1.04413 0.94325 1.37077 0.90376 1.24957 0.98514 0.95067 0.95197 1.70045 1.38628 0.98374 1.43175 0.86178 0.82205 0.78527 0.79056 1.19260 1.20561 1.20681 1.23556 0.96991 0.93567 0.88387 1.21212 1.07321 0.97814 0.93441 1.21694 1.06714 0.98560 0.96769 1.23603 1.08653 0.92026 0.91355 1.83989 1.64316 1.41906 1.17134 0.90461 0.90323 0.90315 0.89358 0.89400 0.90666 0.90581 0.87840 0.87955 0.92220 0.84122 0.85147 0.79879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.06 16 2 C -0.20 -2.40 14.13 -37.12 -0.52 -2.92 16 3 C -0.18 -2.22 13.34 -37.12 -0.50 -2.71 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 5 C -0.10 -1.33 4.46 -26.73 -0.12 -1.45 16 6 C -0.11 -1.56 5.81 -27.88 -0.16 -1.72 16 7 C 0.45 9.13 7.92 36.01 0.29 9.41 16 8 O -0.52 -11.92 15.20 -18.75 -0.29 -12.21 16 9 O -0.35 -8.21 9.85 -41.26 -0.41 -8.62 16 10 C 0.30 7.89 2.42 -29.03 -0.07 7.82 16 11 H 0.08 2.22 7.15 -51.93 -0.37 1.85 16 12 C -0.53 -14.67 8.89 -34.44 -0.31 -14.97 16 13 H 0.08 2.12 7.81 -52.48 -0.41 1.71 16 14 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 15 N -0.87 -24.08 10.92 55.43 0.61 -23.47 16 16 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.03 0.68 5.54 -35.62 -0.20 0.48 16 21 C -0.18 -4.49 9.16 -39.70 -0.36 -4.85 16 22 C -0.22 -4.71 10.91 -39.70 -0.43 -5.14 16 23 C -0.09 -1.84 12.09 29.42 0.36 -1.49 16 24 O -0.18 -4.37 10.65 4.47 0.05 -4.32 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.14 3.62 7.85 -52.49 -0.41 3.21 16 36 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.18 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -32.67 333.91 -6.94 -39.61 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.97 Total: 4.04 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.94 Total: -15.95 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.61 Total: -23.47 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.64 Total: -25.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.67 -6.94 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.894 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds