Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46913 * 177.19600 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47508 * 329.99753 * 10 9 7 12 12 C 1.50701 * 109.47336 * 209.99870 * 10 9 7 13 13 H 1.08006 * 119.99817 * 359.97438 * 12 10 9 14 14 C 1.37874 * 120.00462 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99633 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00341 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46924 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46945 * 120.00027 * 16 14 12 19 19 H 1.48494 * 109.47634 * 240.00314 * 16 14 12 20 20 C 1.50704 * 109.47348 * 90.00141 * 10 9 7 21 21 C 1.34511 * 125.79131 * 219.71605 * 20 10 9 22 22 C 1.41385 * 106.84245 * 179.88675 * 21 20 10 23 23 C 1.34514 * 106.83765 * 0.37205 * 22 21 20 24 24 O 1.34301 * 108.42535 * 359.77188 * 23 22 21 25 25 H 1.08992 * 109.47126 * 182.80617 * 1 2 3 26 26 H 1.09001 * 109.46952 * 302.80474 * 1 2 3 27 27 H 1.09000 * 109.47524 * 62.80198 * 1 2 3 28 28 H 1.08992 * 109.46866 * 57.19356 * 4 3 2 29 29 H 1.08996 * 109.46865 * 297.19486 * 4 3 2 30 30 H 1.09001 * 109.47372 * 60.00182 * 5 4 3 31 31 H 1.09004 * 109.47108 * 299.99927 * 5 4 3 32 32 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 33 33 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 34 34 H 0.97000 * 119.99970 * 179.97438 * 15 14 12 35 35 H 1.08002 * 126.57992 * 0.02722 * 21 20 10 36 36 H 1.07990 * 126.58111 * 180.16599 * 22 21 20 37 37 H 1.08002 * 125.78946 * 179.74580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6267 1.4431 -0.0706 6 6 6.1567 1.4445 -0.0699 7 6 6.6578 2.8640 -0.1401 8 8 5.8717 3.7805 -0.1854 9 8 7.9772 3.1102 -0.1522 10 6 8.3876 4.5013 -0.2203 11 1 7.6367 5.0755 -0.7629 12 6 9.7098 4.6005 -0.9365 13 1 10.1936 3.7072 -1.3033 14 6 10.3021 5.8314 -1.1234 15 7 9.7132 6.9190 -0.6763 16 14 11.9414 5.9542 -2.0104 17 1 12.3905 4.5966 -2.4107 18 1 11.7871 6.8009 -3.2206 19 1 12.9495 6.5628 -1.1058 20 6 8.5297 5.0521 1.1752 21 6 8.1587 6.2809 1.5775 22 6 8.4697 6.3727 2.9537 23 6 9.0196 5.1974 3.3081 24 8 9.0535 4.4014 2.2269 25 1 -0.3633 -1.0264 0.0503 26 1 -0.3633 0.5568 0.8638 27 1 -0.3634 0.4697 -0.9140 28 1 4.4818 -0.5546 -0.8637 29 1 4.4817 -0.4675 0.9140 30 1 4.2629 1.9995 0.7932 31 1 4.2629 1.9124 -0.9847 32 1 6.5208 0.8879 -0.9335 33 1 6.5201 0.9752 0.8443 34 1 10.1300 7.7851 -0.8074 35 1 7.7076 7.0492 0.9670 36 1 8.3014 7.2242 3.5961 37 1 9.3743 4.9380 4.2947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -60.252662 kcal Electronic energy + Delta-G solvation = -20442.864272 eV Core-core repulsion = 17152.225995 eV Total energy + Delta-G solvation = -3290.638277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.18444 -41.27770 -37.81151 -36.57588 -35.29330 -34.24525 -33.55796 -31.72855 -30.54504 -28.63025 -27.58347 -25.16304 -23.52238 -22.39707 -21.67217 -20.98497 -19.13230 -18.50110 -18.30394 -17.54179 -17.21142 -17.00250 -16.45475 -16.20492 -16.01080 -14.97260 -14.75669 -14.68285 -14.42427 -14.25632 -13.93944 -13.55086 -13.51264 -13.45069 -13.26115 -13.12346 -12.99949 -12.83031 -12.52198 -12.20583 -12.02200 -11.90609 -11.42058 -11.32157 -10.82209 -10.67084 -10.56255 -10.53273 -9.12882 -8.24908 -6.53604 1.08784 1.31741 1.39384 1.40898 1.53771 1.68374 1.79349 1.93295 2.13732 2.40659 2.42313 3.00420 3.38367 3.75473 4.02471 4.06649 4.20695 4.38754 4.41034 4.55343 4.60642 4.62240 4.71696 4.76743 4.81368 4.85271 4.88218 5.13765 5.15104 5.16151 5.27578 5.31826 5.42114 5.45809 5.67848 5.82995 5.97242 6.48067 6.58072 6.74014 6.93256 7.18871 8.72369 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.003849 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.829198 B = 7273.621680 C = 7990.664325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.216 4.216 3 C -0.216 4.216 4 C 0.001 3.999 5 C -0.096 4.096 6 C -0.101 4.101 7 C 0.441 3.559 8 O -0.554 6.554 9 O -0.358 6.358 10 C 0.299 3.701 11 H 0.040 0.960 12 C -0.555 4.555 13 H 0.076 0.924 14 C 0.022 3.978 15 N -0.892 5.892 16 Si 0.982 3.018 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.277 1.277 20 C -0.004 4.004 21 C -0.194 4.194 22 C -0.229 4.229 23 C -0.069 4.069 24 O -0.193 6.193 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.270 0.730 35 H 0.120 0.880 36 H 0.165 0.835 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -12.140 4.107 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.216 4.216 3 C -0.216 4.216 4 C -0.035 4.035 5 C -0.134 4.134 6 C -0.138 4.138 7 C 0.286 3.714 8 O -0.446 6.446 9 O -0.274 6.274 10 C 0.245 3.755 11 H 0.058 0.942 12 C -0.592 4.592 13 H 0.094 0.906 14 C -0.181 4.181 15 N -0.527 5.527 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.203 1.203 20 C -0.054 4.054 21 C -0.214 4.214 22 C -0.248 4.248 23 C -0.135 4.135 24 O -0.090 6.090 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.125 -11.928 4.087 15.564 hybrid contribution 0.605 1.307 -0.414 1.498 sum -8.520 -10.622 3.673 14.103 Atomic orbital electron populations 1.19060 0.82582 1.04275 1.03947 1.23421 0.95450 1.00848 1.01878 1.23011 0.94822 1.02084 1.01640 1.18719 0.83380 0.95913 1.05495 1.21253 0.92451 0.96982 1.02686 1.21520 0.96231 0.87609 1.08414 1.24903 0.80769 0.94571 0.71109 1.90599 1.57395 1.49070 1.47507 1.86534 1.25706 1.32800 1.82404 1.18727 0.96093 0.74990 0.85672 0.94224 1.21203 1.05117 0.94737 1.38160 0.90609 1.25866 1.02048 0.94504 0.95699 1.70180 1.39991 0.98756 1.43798 0.85141 0.77529 0.78865 0.77955 1.18384 1.19679 1.20299 1.23343 0.99078 0.94178 0.88838 1.21285 1.07535 0.97161 0.95426 1.22046 1.06985 1.00437 0.95337 1.24695 1.05944 0.90880 0.92017 1.83959 1.64550 1.42762 1.17747 0.88515 0.89305 0.89293 0.87143 0.87259 0.92706 0.92456 0.84631 0.84983 0.92081 0.86182 0.81719 0.74260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.60 10.32 70.18 0.72 0.12 16 2 C -0.22 -4.93 14.13 31.13 0.44 -4.49 16 3 C -0.22 -5.16 13.34 31.13 0.42 -4.75 16 4 C 0.00 0.02 5.70 28.79 0.16 0.18 16 5 C -0.10 -2.42 4.46 30.59 0.14 -2.28 16 6 C -0.10 -2.60 5.81 29.85 0.17 -2.42 16 7 C 0.44 18.32 7.92 71.24 0.56 18.88 16 8 O -0.55 -27.02 15.20 21.96 0.33 -26.69 16 9 O -0.36 -17.35 9.85 -49.39 -0.49 -17.83 16 10 C 0.30 16.68 2.42 29.10 0.07 16.75 16 11 H 0.04 2.46 7.15 -2.39 -0.02 2.44 16 12 C -0.56 -31.66 8.89 25.60 0.23 -31.43 16 13 H 0.08 4.21 7.81 -2.91 -0.02 4.19 16 14 C 0.02 1.21 5.30 84.65 0.45 1.65 16 15 N -0.89 -50.99 10.92 21.45 0.23 -50.75 16 16 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.00 -0.21 5.54 24.83 0.14 -0.07 16 21 C -0.19 -10.05 9.16 22.19 0.20 -9.85 16 22 C -0.23 -9.58 10.91 22.19 0.24 -9.34 16 23 C -0.07 -2.69 12.09 66.97 0.81 -1.88 16 24 O -0.19 -9.43 10.65 -1.37 -0.01 -9.45 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.06 1.64 8.10 -2.38 -0.02 1.62 16 32 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.27 14.50 8.31 -92.71 -0.77 13.72 16 35 H 0.12 6.57 7.85 -2.91 -0.02 6.55 16 36 H 0.17 5.59 8.06 -2.92 -0.02 5.56 16 37 H 0.24 6.28 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -75.28 333.91 7.92 -67.36 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.07 Total: 21.17 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 4.76 Total: -28.91 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.23 Total: -50.75 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -0.17 Total: -53.97 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -75.28 7.92 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.108 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds