Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00537 * 2 1 4 4 H 1.48491 * 109.47272 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.46983 * 30.00273 * 3 2 1 6 6 H 1.48502 * 109.47142 * 149.99806 * 3 2 1 7 7 C 1.37882 * 119.99387 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00134 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46974 * 60.00592 * 9 7 2 11 11 O 1.45197 * 109.46717 * 180.02562 * 9 7 2 12 12 C 1.34903 * 116.99677 * 210.00060 * 11 9 7 13 13 O 1.21618 * 119.99830 * 0.02562 * 12 11 9 14 14 C 1.46475 * 119.99911 * 179.97438 * 12 11 9 15 15 O 1.34961 * 126.01341 * 0.02562 * 14 12 11 16 16 C 1.33936 * 109.37020 * 180.02562 * 15 14 12 17 17 C 1.35185 * 108.76796 * 359.97438 * 16 15 14 18 18 C 1.36574 * 126.01464 * 179.97438 * 14 12 11 19 19 C 1.51073 * 143.66070 * 0.02562 * 18 14 12 20 20 C 1.54371 * 105.23530 * 197.15052 * 19 18 14 21 21 C 1.51147 * 143.42493 * 179.97438 * 17 16 15 22 22 C 1.53001 * 109.47132 * 300.00006 * 9 7 2 23 23 C 1.52996 * 117.49806 * 248.74602 * 22 9 7 24 24 C 1.52999 * 117.49765 * 180.08703 * 22 9 7 25 25 H 0.97007 * 119.99758 * 359.97438 * 1 2 3 26 26 H 1.08003 * 125.60966 * 180.26538 * 16 15 14 27 27 H 1.09007 * 110.28663 * 316.09006 * 19 18 14 28 28 H 1.08998 * 110.29202 * 78.11154 * 19 18 14 29 29 H 1.08997 * 110.76638 * 91.86350 * 20 19 18 30 30 H 1.09000 * 110.76393 * 215.06157 * 20 19 18 31 31 H 1.08996 * 110.28920 * 281.78262 * 21 17 16 32 32 H 1.09003 * 110.28688 * 43.89094 * 21 17 16 33 33 H 1.08995 * 115.54776 * 34.42134 * 22 9 7 34 34 H 1.08999 * 117.49849 * 359.97438 * 23 22 9 35 35 H 1.08996 * 117.49792 * 145.02281 * 23 22 9 36 36 H 1.08996 * 117.50070 * 214.98526 * 24 22 9 37 37 H 1.09006 * 117.49571 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 8 2.1943 -3.6028 -0.0005 12 6 1.8010 -4.7447 -0.6016 13 8 0.6994 -4.8150 -1.1119 14 6 2.7013 -5.8995 -0.6404 15 8 3.9436 -5.9552 -0.1162 16 6 4.4673 -7.1670 -0.3423 17 6 3.5642 -7.9119 -1.0183 18 6 2.4307 -7.1097 -1.2127 19 6 1.3808 -7.8920 -1.9662 20 6 1.8010 -9.3712 -1.8295 21 6 3.3298 -9.2726 -1.6331 22 6 0.3717 -2.5805 1.2490 23 6 0.7536 -3.6085 2.3158 24 6 -0.4768 -3.8399 1.4351 25 1 -0.4850 0.8401 0.0004 26 1 5.4478 -7.4964 -0.0313 27 1 0.3991 -7.7350 -1.5191 28 1 1.3694 -7.5963 -3.0153 29 1 1.3268 -9.8289 -0.9613 30 1 1.5612 -9.9264 -2.7363 31 1 3.8412 -9.3469 -2.5928 32 1 3.6745 -10.0565 -0.9587 33 1 -0.0500 -1.6348 1.5894 34 1 1.6309 -4.2273 2.1273 35 1 0.5828 -3.3393 3.3581 36 1 -1.4565 -3.7229 1.8983 37 1 -0.4090 -4.6105 0.6671 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = -58.116269 kcal Electronic energy + Delta-G solvation = -21481.775105 eV Core-core repulsion = 18191.229469 eV Total energy + Delta-G solvation = -3290.545636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.95764 -41.38898 -38.47644 -38.18434 -36.59006 -34.91765 -31.84492 -31.56746 -30.02175 -28.22614 -25.71018 -24.57662 -23.28452 -23.02907 -21.62155 -21.20820 -20.56030 -18.98651 -18.52156 -17.99341 -17.67234 -17.17247 -16.86996 -16.30974 -15.97843 -15.63892 -15.03317 -14.85580 -14.38297 -14.08644 -13.74567 -13.65634 -13.36133 -13.11004 -12.81799 -12.71637 -12.68227 -12.42217 -12.28206 -12.09798 -12.06742 -12.01490 -11.81660 -11.41845 -11.13099 -10.54142 -10.49651 -10.32244 -9.70012 -8.29871 -6.46945 -0.20780 1.22904 1.37721 1.42305 1.45489 1.55810 1.80082 2.17747 2.43511 2.96937 2.97938 3.09748 3.72361 3.81228 4.00396 4.07450 4.13639 4.17579 4.20729 4.22199 4.43910 4.69166 4.76146 4.78885 4.79758 4.90006 4.92150 4.94230 5.09139 5.16612 5.17404 5.23346 5.33721 5.41079 5.42655 5.51295 5.72805 5.83517 6.00404 6.54620 6.80692 7.22581 8.77863 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027545 B = 0.004738 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.277310 B = 5907.843281 C = 6263.133495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.253 3.747 10 H 0.011 0.989 11 O -0.352 6.352 12 C 0.533 3.467 13 O -0.519 6.519 14 C -0.089 4.089 15 O -0.163 6.163 16 C 0.033 3.967 17 C -0.228 4.228 18 C -0.105 4.105 19 C -0.066 4.066 20 C -0.109 4.109 21 C -0.039 4.039 22 C -0.145 4.145 23 C -0.170 4.170 24 C -0.197 4.197 25 H 0.271 0.729 26 H 0.262 0.738 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 -18.720 -0.953 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.200 3.800 10 H 0.029 0.971 11 O -0.268 6.268 12 C 0.380 3.620 13 O -0.412 6.412 14 C -0.139 4.139 15 O -0.059 6.059 16 C -0.036 4.036 17 C -0.229 4.229 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.146 4.146 21 C -0.076 4.076 22 C -0.164 4.164 23 C -0.207 4.207 24 C -0.234 4.234 25 H 0.081 0.919 26 H 0.278 0.722 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.912 -18.321 -0.936 19.604 hybrid contribution -0.185 1.359 -0.099 1.375 sum 6.727 -16.962 -1.036 18.277 Atomic orbital electron populations 1.70100 1.07353 1.28517 1.48807 1.25791 0.95953 1.02633 0.93458 0.85212 0.78505 0.77222 0.78660 1.19673 1.19743 1.18877 1.21197 0.93899 0.89538 1.53990 0.91788 1.19892 0.85928 0.80794 0.93365 0.97110 1.86658 1.48686 1.22157 1.69315 1.19747 0.84402 0.82525 0.75308 1.90806 1.21498 1.83352 1.45573 1.19851 0.87063 0.94946 1.11997 1.84284 1.25165 1.34604 1.61812 1.24584 1.00446 0.80495 0.98070 1.21863 0.94015 1.00888 1.06137 1.21746 1.00635 0.91081 0.97289 1.20828 0.95562 0.94867 0.99070 1.22438 0.94962 0.92963 1.04215 1.20580 0.96326 0.89648 1.01013 1.22741 1.01159 0.94140 0.98317 1.22852 0.98016 1.03258 0.96533 1.23143 0.95805 1.01189 1.03294 0.91946 0.72190 0.91385 0.89365 0.90147 0.87470 0.88524 0.88083 0.87159 0.90217 0.87422 0.88132 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.03 11.59 21.45 0.25 -52.78 16 2 C 0.02 1.25 5.20 84.66 0.44 1.69 16 3 Si 0.98 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -32.40 8.90 25.60 0.23 -32.18 16 8 H 0.06 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.25 14.55 2.41 29.85 0.07 14.62 16 10 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 11 O -0.35 -18.65 8.39 -56.82 -0.48 -19.13 16 12 C 0.53 25.61 6.88 69.97 0.48 26.09 16 13 O -0.52 -26.55 13.97 19.45 0.27 -26.28 16 14 C -0.09 -3.49 7.18 24.03 0.17 -3.32 16 15 O -0.16 -5.52 10.67 -5.36 -0.06 -5.57 16 16 C 0.03 0.72 12.08 67.12 0.81 1.53 16 17 C -0.23 -5.13 6.93 -19.95 -0.14 -5.27 16 18 C -0.11 -3.29 6.66 -19.66 -0.13 -3.42 16 19 C -0.07 -1.65 6.76 30.43 0.21 -1.44 16 20 C -0.11 -1.62 7.06 31.55 0.22 -1.39 16 21 C -0.04 -0.53 6.76 30.48 0.21 -0.33 16 22 C -0.14 -7.61 5.27 -10.79 -0.06 -7.66 16 23 C -0.17 -7.47 9.80 30.62 0.30 -7.17 16 24 C -0.20 -9.01 9.85 30.62 0.30 -8.71 16 25 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 26 H 0.26 2.55 8.06 -2.91 -0.02 2.53 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 6.24 6.46 -2.39 -0.02 6.23 16 34 H 0.08 3.57 6.91 -2.39 -0.02 3.55 16 35 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 36 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 37 H 0.08 3.92 5.36 -2.38 -0.01 3.90 16 Total: -1.00 -73.11 312.42 6.21 -66.90 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.09 Total: 18.01 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.11 Total: -26.98 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.25 Total: -52.78 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.26 Total: -50.98 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -73.11 6.21 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.784 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds