Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48507 * 109.46937 * 269.99624 * 3 2 1 5 5 H 1.48495 * 109.47321 * 29.99762 * 3 2 1 6 6 H 1.48500 * 109.46877 * 149.99956 * 3 2 1 7 7 C 1.37873 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00309 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47613 * 300.00429 * 9 7 2 11 11 O 1.45197 * 109.47046 * 180.02562 * 9 7 2 12 12 C 1.34903 * 116.99677 * 150.00318 * 11 9 7 13 13 O 1.21618 * 119.99830 * 0.02562 * 12 11 9 14 14 C 1.46475 * 119.99911 * 179.97438 * 12 11 9 15 15 O 1.34961 * 126.01341 * 0.02562 * 14 12 11 16 16 C 1.33936 * 109.37020 * 180.02562 * 15 14 12 17 17 C 1.35185 * 108.76796 * 359.97438 * 16 15 14 18 18 C 1.36574 * 126.01464 * 179.97438 * 14 12 11 19 19 C 1.51073 * 143.66070 * 0.02562 * 18 14 12 20 20 C 1.54371 * 105.23530 * 197.15052 * 19 18 14 21 21 C 1.51147 * 143.42493 * 179.97438 * 17 16 15 22 22 C 1.53004 * 109.47003 * 60.00566 * 9 7 2 23 23 C 1.52998 * 117.49862 * 248.74984 * 22 9 7 24 24 C 1.52992 * 117.50151 * 180.08587 * 22 9 7 25 25 H 0.97008 * 119.99561 * 0.02562 * 1 2 3 26 26 H 1.08003 * 125.60966 * 180.26538 * 16 15 14 27 27 H 1.09007 * 110.28663 * 316.09006 * 19 18 14 28 28 H 1.08998 * 110.29202 * 78.11154 * 19 18 14 29 29 H 1.08997 * 110.76638 * 91.86350 * 20 19 18 30 30 H 1.09000 * 110.76393 * 215.06157 * 20 19 18 31 31 H 1.08996 * 110.28920 * 281.78262 * 21 17 16 32 32 H 1.09003 * 110.28688 * 43.89094 * 21 17 16 33 33 H 1.09008 * 115.54799 * 34.41402 * 22 9 7 34 34 H 1.09004 * 117.49890 * 359.97438 * 23 22 9 35 35 H 1.09000 * 117.50200 * 145.01485 * 23 22 9 36 36 H 1.08998 * 117.50009 * 214.97411 * 24 22 9 37 37 H 1.09008 * 117.49857 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8896 11 8 2.1944 -3.6028 -0.0005 12 6 1.8011 -4.7447 0.6004 13 8 0.6990 -4.8153 1.1099 14 6 2.7009 -5.8999 0.6383 15 8 3.9433 -5.9556 0.1140 16 6 4.4661 -7.1681 0.3381 17 6 3.5628 -7.9131 1.0138 18 6 2.4307 -7.1098 1.2112 19 6 1.3812 -7.8918 1.9658 20 6 2.1353 -9.0854 2.5900 21 6 3.3274 -9.2747 1.6263 22 6 0.3709 -2.5799 -1.2496 23 6 -1.1447 -2.5123 -1.0515 24 6 -0.4807 -3.8375 -1.4336 25 1 -0.4850 0.8401 -0.0004 26 1 5.4494 -7.4951 0.0336 27 1 0.9386 -7.2739 2.7472 28 1 0.6095 -8.2459 1.2823 29 1 2.4826 -8.8409 3.5938 30 1 1.5050 -9.9746 2.6068 31 1 3.0777 -9.9996 0.8516 32 1 4.2100 -9.5987 2.1778 33 1 0.7826 -2.1153 -2.1456 34 1 -1.5149 -2.4106 -0.0313 35 1 -1.7302 -2.0035 -1.8173 36 1 -0.6297 -4.2001 -2.4507 37 1 -0.4138 -4.6077 -0.6651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123462504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -42.268486 kcal Electronic energy + Delta-G solvation = -21378.790050 eV Core-core repulsion = 18088.931626 eV Total energy + Delta-G solvation = -3289.858424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.76604 -39.42798 -37.33599 -36.37773 -34.89074 -32.64039 -30.66713 -30.47036 -28.09425 -27.03448 -23.92820 -22.91684 -21.85836 -21.23037 -20.30478 -19.65932 -19.08616 -17.44814 -16.49980 -16.48479 -16.24677 -15.37636 -15.24180 -14.84736 -14.53699 -14.05692 -13.83883 -13.20295 -12.97965 -12.72732 -12.58397 -11.78731 -11.70310 -11.60707 -11.39113 -11.28891 -11.25681 -11.02325 -10.94878 -10.43899 -10.29274 -9.97499 -9.82173 -9.41315 -9.26030 -9.03116 -8.65781 -8.52455 -8.40884 -6.14424 -4.22217 1.17786 2.30911 2.79904 3.26741 3.32486 3.36309 3.43082 3.71310 3.98915 4.35865 4.66263 4.88210 4.92211 5.03975 5.07207 5.16829 5.29176 5.54856 5.62163 5.75609 5.79257 5.87778 5.96196 6.02524 6.07797 6.13960 6.16864 6.36055 6.39391 6.56057 6.63589 6.99502 7.02240 7.15704 7.22232 7.36506 7.60493 7.83355 8.08208 8.54910 8.87410 9.42087 10.92408 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.004735 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.004187 B = 5912.558642 C = 6451.859751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.248 3.752 10 H 0.051 0.949 11 O -0.339 6.339 12 C 0.540 3.460 13 O -0.494 6.494 14 C -0.028 4.028 15 O -0.139 6.139 16 C 0.008 3.992 17 C -0.224 4.224 18 C -0.113 4.113 19 C -0.054 4.054 20 C -0.118 4.118 21 C -0.043 4.043 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.230 4.230 25 H 0.264 0.736 26 H 0.209 0.791 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -16.342 1.829 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.196 3.804 10 H 0.068 0.932 11 O -0.255 6.255 12 C 0.384 3.616 13 O -0.385 6.385 14 C -0.078 4.078 15 O -0.034 6.034 16 C -0.062 4.062 17 C -0.225 4.225 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.156 4.156 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.159 4.159 24 C -0.267 4.267 25 H 0.074 0.926 26 H 0.226 0.774 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.618 -15.914 1.819 16.670 hybrid contribution 0.337 0.934 -0.162 1.006 sum 4.955 -14.980 1.658 15.865 Atomic orbital electron populations 1.70053 1.05738 1.27019 1.48069 1.24869 0.95043 0.99038 0.94502 0.86339 0.79703 0.82211 0.78267 1.20423 1.21019 1.19658 1.20902 0.93904 0.88228 1.53529 0.91202 1.20324 0.86075 0.80185 0.93799 0.93158 1.86677 1.48982 1.21467 1.68353 1.19173 0.83752 0.82435 0.76241 1.90843 1.20124 1.82939 1.44613 1.20350 0.85655 0.95013 1.06801 1.84326 1.25835 1.32139 1.61063 1.23417 0.99222 0.82526 1.01003 1.21282 0.95651 0.99330 1.06236 1.21139 0.98520 0.91912 0.99912 1.20557 0.95284 0.94645 0.98663 1.22394 0.96324 0.97990 0.98876 1.20421 0.98575 0.91446 0.97616 1.22610 0.92945 0.97531 1.00458 1.22371 0.95414 0.96636 1.01461 1.23282 1.09469 0.93002 1.00919 0.92606 0.77399 0.89856 0.89709 0.90814 0.90266 0.90387 0.90874 0.89188 0.89259 0.90692 0.90950 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.26 11.43 55.43 0.63 -23.63 16 2 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.90 8.88 -34.44 -0.31 -15.20 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.25 6.69 2.25 -27.88 -0.06 6.63 16 10 H 0.05 1.48 6.92 -51.93 -0.36 1.12 16 11 O -0.34 -8.53 9.86 -42.48 -0.42 -8.95 16 12 C 0.54 12.19 7.15 34.05 0.24 12.43 16 13 O -0.49 -11.67 13.96 -19.36 -0.27 -11.94 16 14 C -0.03 -0.53 7.18 -36.87 -0.26 -0.79 16 15 O -0.14 -2.38 10.67 4.63 0.05 -2.33 16 16 C 0.01 0.10 12.08 29.65 0.36 0.46 16 17 C -0.22 -2.85 6.93 -104.75 -0.73 -3.58 16 18 C -0.11 -1.78 6.66 -104.30 -0.69 -2.48 16 19 C -0.05 -0.70 6.76 -26.98 -0.18 -0.88 16 20 C -0.12 -1.09 7.06 -25.25 -0.18 -1.27 16 21 C -0.04 -0.40 6.76 -26.90 -0.18 -0.58 16 22 C -0.12 -2.92 4.47 -90.62 -0.41 -3.32 16 23 C -0.12 -2.83 9.04 -26.69 -0.24 -3.07 16 24 C -0.23 -5.08 9.81 -26.70 -0.26 -5.34 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.21 1.56 8.06 -52.48 -0.42 1.14 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 2.31 8.11 -51.92 -0.42 1.89 16 34 H 0.09 2.20 8.05 -51.93 -0.42 1.79 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 2.11 5.36 -51.92 -0.28 1.84 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -30.91 314.85 -8.11 -39.01 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.83 Total: 2.19 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.00 Total: -15.19 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.63 Total: -23.63 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.64 Total: -23.22 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.91 -8.11 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.254 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds