Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48507 * 109.46937 * 269.99624 * 3 2 1 5 5 H 1.48495 * 109.47321 * 29.99762 * 3 2 1 6 6 H 1.48500 * 109.46877 * 149.99956 * 3 2 1 7 7 C 1.37873 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00309 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47613 * 300.00429 * 9 7 2 11 11 O 1.45197 * 109.47046 * 180.02562 * 9 7 2 12 12 C 1.34903 * 116.99677 * 150.00318 * 11 9 7 13 13 O 1.21618 * 119.99830 * 0.02562 * 12 11 9 14 14 C 1.46475 * 119.99911 * 179.97438 * 12 11 9 15 15 O 1.34961 * 126.01341 * 0.02562 * 14 12 11 16 16 C 1.33936 * 109.37020 * 180.02562 * 15 14 12 17 17 C 1.35185 * 108.76796 * 359.97438 * 16 15 14 18 18 C 1.36574 * 126.01464 * 179.97438 * 14 12 11 19 19 C 1.51073 * 143.66070 * 0.02562 * 18 14 12 20 20 C 1.54371 * 105.23530 * 197.15052 * 19 18 14 21 21 C 1.51147 * 143.42493 * 179.97438 * 17 16 15 22 22 C 1.53004 * 109.47003 * 60.00566 * 9 7 2 23 23 C 1.52998 * 117.49862 * 248.74984 * 22 9 7 24 24 C 1.52992 * 117.50151 * 180.08587 * 22 9 7 25 25 H 0.97008 * 119.99561 * 0.02562 * 1 2 3 26 26 H 1.08003 * 125.60966 * 180.26538 * 16 15 14 27 27 H 1.09007 * 110.28663 * 316.09006 * 19 18 14 28 28 H 1.08998 * 110.29202 * 78.11154 * 19 18 14 29 29 H 1.08997 * 110.76638 * 91.86350 * 20 19 18 30 30 H 1.09000 * 110.76393 * 215.06157 * 20 19 18 31 31 H 1.08996 * 110.28920 * 281.78262 * 21 17 16 32 32 H 1.09003 * 110.28688 * 43.89094 * 21 17 16 33 33 H 1.09008 * 115.54799 * 34.41402 * 22 9 7 34 34 H 1.09004 * 117.49890 * 359.97438 * 23 22 9 35 35 H 1.09000 * 117.50200 * 145.01485 * 23 22 9 36 36 H 1.08998 * 117.50009 * 214.97411 * 24 22 9 37 37 H 1.09008 * 117.49857 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8896 11 8 2.1944 -3.6028 -0.0005 12 6 1.8011 -4.7447 0.6004 13 8 0.6990 -4.8153 1.1099 14 6 2.7009 -5.8999 0.6383 15 8 3.9433 -5.9556 0.1140 16 6 4.4661 -7.1681 0.3381 17 6 3.5628 -7.9131 1.0138 18 6 2.4307 -7.1098 1.2112 19 6 1.3812 -7.8918 1.9658 20 6 2.1353 -9.0854 2.5900 21 6 3.3274 -9.2747 1.6263 22 6 0.3709 -2.5799 -1.2496 23 6 -1.1447 -2.5123 -1.0515 24 6 -0.4807 -3.8375 -1.4336 25 1 -0.4850 0.8401 -0.0004 26 1 5.4494 -7.4951 0.0336 27 1 0.9386 -7.2739 2.7472 28 1 0.6095 -8.2459 1.2823 29 1 2.4826 -8.8409 3.5938 30 1 1.5050 -9.9746 2.6068 31 1 3.0777 -9.9996 0.8516 32 1 4.2100 -9.5987 2.1778 33 1 0.7826 -2.1153 -2.1456 34 1 -1.5149 -2.4106 -0.0313 35 1 -1.7302 -2.0035 -1.8173 36 1 -0.6297 -4.2001 -2.4507 37 1 -0.4138 -4.6077 -0.6651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -59.087581 kcal Electronic energy + Delta-G solvation = -21379.519381 eV Core-core repulsion = 18088.931626 eV Total energy + Delta-G solvation = -3290.587755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.94234 -41.25346 -38.42310 -38.16474 -36.77060 -34.74705 -31.82788 -31.55478 -29.97874 -28.20787 -25.65242 -24.48928 -23.13163 -22.99419 -21.59870 -21.25888 -20.72423 -19.03013 -18.36154 -17.88732 -17.81228 -16.84050 -16.75254 -16.41719 -15.93296 -15.74281 -15.00495 -14.83419 -14.54590 -14.07218 -13.70589 -13.60878 -13.35195 -13.03392 -12.82722 -12.70484 -12.67529 -12.31625 -12.22137 -12.08711 -12.05643 -11.82611 -11.78810 -11.38468 -10.99612 -10.66368 -10.48503 -10.30798 -9.68592 -8.24532 -6.42143 -0.18809 1.24187 1.39027 1.42640 1.46021 1.55757 1.82612 2.18678 2.44274 2.98712 3.02604 3.19506 3.74675 3.83751 4.04775 4.09399 4.15059 4.18493 4.25449 4.39125 4.42890 4.65801 4.75429 4.79653 4.81047 4.93205 4.94288 5.07365 5.09792 5.17679 5.19293 5.32524 5.34534 5.42111 5.42744 5.48167 5.74129 5.83505 6.02578 6.57801 6.83857 7.26827 8.82096 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.004735 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.004187 B = 5912.558642 C = 6451.859751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.029 3.971 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.561 4.561 8 H 0.060 0.940 9 C 0.254 3.746 10 H 0.012 0.988 11 O -0.356 6.356 12 C 0.535 3.465 13 O -0.520 6.520 14 C -0.088 4.088 15 O -0.164 6.164 16 C 0.032 3.968 17 C -0.228 4.228 18 C -0.106 4.106 19 C -0.065 4.065 20 C -0.109 4.109 21 C -0.039 4.039 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.203 4.203 25 H 0.269 0.731 26 H 0.262 0.738 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 -18.485 1.517 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.174 4.174 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.078 0.922 9 C 0.201 3.799 10 H 0.030 0.970 11 O -0.273 6.273 12 C 0.382 3.618 13 O -0.413 6.413 14 C -0.138 4.138 15 O -0.060 6.060 16 C -0.037 4.037 17 C -0.229 4.229 18 C -0.108 4.108 19 C -0.102 4.102 20 C -0.146 4.146 21 C -0.075 4.075 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.239 4.239 25 H 0.078 0.922 26 H 0.278 0.722 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.984 -18.081 1.512 19.105 hybrid contribution -0.038 1.445 -0.016 1.446 sum 5.946 -16.635 1.496 17.729 Atomic orbital electron populations 1.70154 1.06939 1.28122 1.47557 1.25706 0.96014 1.02190 0.93477 0.85284 0.78340 0.77647 0.78705 1.19356 1.20001 1.19501 1.21138 0.93683 0.89663 1.55324 0.92181 1.19996 0.86085 0.80780 0.93045 0.97027 1.86651 1.48930 1.22267 1.69433 1.19721 0.84393 0.82454 0.75248 1.90793 1.21409 1.83400 1.45735 1.19871 0.87106 0.94934 1.11845 1.84285 1.25300 1.34621 1.61750 1.24578 1.00457 0.80473 0.98194 1.21864 0.94100 1.00710 1.06255 1.21741 1.00480 0.91048 0.97509 1.20822 0.95422 0.95741 0.98264 1.22441 0.96329 0.97055 0.98813 1.20577 0.99477 0.89410 0.98070 1.22425 0.93583 1.00221 0.99313 1.22302 0.94335 0.97754 1.00875 1.23266 1.06634 0.91788 1.02252 0.92184 0.72229 0.91517 0.89137 0.90304 0.87395 0.88411 0.88186 0.90083 0.91373 0.88845 0.87790 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.80 11.43 21.45 0.25 -50.55 16 2 C 0.03 1.60 5.30 84.65 0.45 2.05 16 3 Si 0.98 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.56 -33.18 8.88 25.60 0.23 -32.95 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.25 14.54 2.25 29.85 0.07 14.61 16 10 H 0.01 0.76 6.92 -2.39 -0.02 0.74 16 11 O -0.36 -19.19 9.86 -56.82 -0.56 -19.75 16 12 C 0.53 25.83 7.15 69.97 0.50 26.33 16 13 O -0.52 -26.44 13.96 19.45 0.27 -26.17 16 14 C -0.09 -3.48 7.18 24.03 0.17 -3.31 16 15 O -0.16 -5.62 10.67 -5.36 -0.06 -5.68 16 16 C 0.03 0.71 12.08 67.12 0.81 1.52 16 17 C -0.23 -5.17 6.93 -19.95 -0.14 -5.31 16 18 C -0.11 -3.30 6.66 -19.66 -0.13 -3.43 16 19 C -0.07 -1.62 6.76 30.43 0.21 -1.42 16 20 C -0.11 -1.64 7.06 31.55 0.22 -1.41 16 21 C -0.04 -0.53 6.76 30.48 0.21 -0.33 16 22 C -0.14 -7.11 4.47 -10.80 -0.05 -7.16 16 23 C -0.12 -5.52 9.04 30.62 0.28 -5.24 16 24 C -0.20 -9.10 9.81 30.62 0.30 -8.80 16 25 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 26 H 0.26 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 4.32 8.11 -2.38 -0.02 4.30 16 34 H 0.07 3.53 8.05 -2.39 -0.02 3.51 16 35 H 0.09 4.06 8.14 -2.39 -0.02 4.04 16 36 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 37 H 0.08 3.92 5.36 -2.38 -0.01 3.91 16 Total: -1.00 -72.37 314.85 6.13 -66.24 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.08 Total: 14.90 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.12 Total: -24.86 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.25 Total: -50.55 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.35 Total: -51.60 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.37 6.13 -66.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.155 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds