Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00280 * 2 1 4 4 H 1.48509 * 109.47087 * 239.99712 * 3 2 1 5 5 H 1.48495 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47600 * 119.99980 * 3 2 1 7 7 C 1.37883 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99601 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46630 * 59.99953 * 9 7 2 11 11 O 1.45199 * 109.46720 * 179.97438 * 9 7 2 12 12 C 1.34233 * 116.99493 * 210.00052 * 11 9 7 13 13 O 1.20826 * 120.00434 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99708 * 180.02562 * 12 11 9 15 15 H 1.09004 * 115.58042 * 34.37632 * 14 12 11 16 16 C 1.53124 * 117.51296 * 248.60652 * 14 12 11 17 17 C 1.52463 * 59.91303 * 252.57250 * 16 14 12 18 18 C 1.53253 * 128.58661 * 242.37621 * 17 16 14 19 19 C 1.53884 * 86.88536 * 194.88792 * 18 17 16 20 20 C 1.53255 * 128.58200 * 117.57682 * 17 16 14 21 21 C 1.50699 * 109.47081 * 299.99818 * 9 7 2 22 22 C 1.34516 * 125.79007 * 99.71809 * 21 9 7 23 23 C 1.41375 * 106.83829 * 179.88829 * 22 21 9 24 24 C 1.34510 * 106.84559 * 0.37105 * 23 22 21 25 25 O 1.34300 * 125.78774 * 280.02646 * 21 9 7 26 26 H 0.97003 * 119.99583 * 0.02562 * 1 2 3 27 27 H 1.09002 * 117.51408 * 145.10348 * 16 14 12 28 28 H 1.08998 * 117.51142 * 0.04328 * 16 14 12 29 29 H 1.09000 * 113.64538 * 309.38960 * 18 17 16 30 30 H 1.09011 * 113.64293 * 80.38953 * 18 17 16 31 31 H 1.08996 * 113.59311 * 270.39425 * 19 18 17 32 32 H 1.09002 * 113.66108 * 139.58400 * 19 18 17 33 33 H 1.08999 * 113.65298 * 279.60951 * 20 17 16 34 34 H 1.08997 * 113.64902 * 50.62025 * 20 17 16 35 35 H 1.08001 * 126.57689 * 0.02562 * 22 21 9 36 36 H 1.08008 * 126.58039 * 180.16581 * 23 22 21 37 37 H 1.07997 * 125.79246 * 179.74911 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8897 11 8 2.1945 -3.6028 0.0005 12 6 1.8031 -4.7390 -0.5975 13 8 0.7086 -4.8090 -1.1046 14 6 2.7289 -5.9275 -0.6365 15 1 3.3678 -6.0553 0.2374 16 6 3.3021 -6.3334 -1.9972 17 6 2.2278 -7.1885 -1.3345 18 6 2.3206 -8.6438 -0.8629 19 6 0.7839 -8.6277 -0.7825 20 6 0.8148 -7.5060 -1.8358 21 6 0.3841 -2.5787 1.2307 22 6 -0.9351 -2.3203 1.2816 23 6 -1.3400 -2.5196 2.6213 24 6 -0.2427 -2.8798 3.3108 25 8 0.7987 -2.9139 2.4633 26 1 -0.4850 0.8401 -0.0004 27 1 4.3179 -6.7280 -2.0182 28 1 3.0100 -5.7402 -2.8637 29 1 2.7117 -9.3243 -1.6192 30 1 2.8079 -8.7594 0.1053 31 1 0.4011 -8.3060 0.1860 32 1 0.3176 -9.5467 -1.1375 33 1 0.0948 -6.7096 -1.6476 34 1 0.7868 -7.8700 -2.8628 35 1 -1.5644 -2.0206 0.4567 36 1 -2.3384 -2.4017 3.0163 37 1 -0.2052 -3.1033 4.3667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123462982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -20.471424 kcal Electronic energy + Delta-G solvation = -21520.074121 eV Core-core repulsion = 18231.160888 eV Total energy + Delta-G solvation = -3288.913233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34610 -40.20172 -38.53212 -35.63523 -33.62595 -33.22288 -31.70723 -29.66666 -26.74859 -25.60877 -24.84661 -22.79260 -22.58294 -20.69551 -20.20341 -19.30287 -18.23477 -17.26269 -16.64214 -16.36434 -15.45034 -15.30305 -15.07808 -14.87503 -14.70113 -14.43000 -13.41655 -13.05191 -12.57783 -12.30614 -12.08658 -11.96254 -11.71611 -11.56903 -11.50623 -11.31767 -11.22219 -11.13318 -10.95188 -10.41151 -10.30284 -10.06406 -9.98933 -9.79418 -9.42145 -9.32995 -8.81848 -8.64563 -7.25639 -6.21283 -4.39280 2.74038 2.86709 3.23146 3.26068 3.27801 3.42635 3.87733 3.94794 4.19233 4.26017 4.57592 4.66067 4.80811 4.93093 4.96700 5.07266 5.41659 5.56301 5.65177 5.74521 5.76283 5.80722 5.86208 5.91418 6.05420 6.10028 6.31603 6.36111 6.39302 6.50594 6.75321 6.98959 7.15540 7.23355 7.41030 7.69783 7.70485 7.87084 8.36911 8.53854 8.80156 9.27577 10.77470 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.005642 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.063633 B = 4961.469243 C = 5800.930978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.298 3.702 10 H 0.078 0.922 11 O -0.345 6.345 12 C 0.484 3.516 13 O -0.511 6.511 14 C -0.134 4.134 15 H 0.131 0.869 16 C -0.136 4.136 17 C -0.129 4.129 18 C -0.098 4.098 19 C -0.138 4.138 20 C -0.109 4.109 21 C 0.027 3.973 22 C -0.179 4.179 23 C -0.218 4.218 24 C -0.089 4.089 25 O -0.177 6.177 26 H 0.269 0.731 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -12.649 -0.439 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.245 3.755 10 H 0.096 0.904 11 O -0.261 6.261 12 C 0.327 3.673 13 O -0.400 6.400 14 C -0.153 4.153 15 H 0.149 0.851 16 C -0.173 4.173 17 C -0.129 4.129 18 C -0.135 4.135 19 C -0.176 4.176 20 C -0.146 4.146 21 C -0.024 4.024 22 C -0.198 4.198 23 C -0.237 4.237 24 C -0.156 4.156 25 O -0.073 6.073 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.517 -12.557 -0.505 12.816 hybrid contribution -0.021 1.307 0.346 1.353 sum 2.497 -11.249 -0.159 11.524 Atomic orbital electron populations 1.70022 1.05919 1.27765 1.46537 1.24941 0.95132 0.99534 0.94000 0.86288 0.79348 0.81292 0.79017 1.19713 1.20920 1.19840 1.20860 0.94128 0.87598 1.54304 0.90483 1.19173 0.85713 0.81797 0.88799 0.90411 1.86543 1.48302 1.21846 1.69408 1.22393 0.85764 0.84110 0.75030 1.90541 1.22469 1.83016 1.43987 1.21609 1.02126 0.91932 0.99673 0.85126 1.22888 0.98518 1.01927 0.93986 1.22226 0.97348 0.91166 1.02177 1.22507 0.97015 0.92936 1.01028 1.22753 0.95757 0.98905 1.00158 1.22654 0.94907 0.98965 0.98084 1.23547 0.94156 1.00174 0.84565 1.21207 0.94845 1.06901 0.96858 1.21687 0.98907 1.07965 0.95168 1.23602 0.86070 1.10314 0.95634 1.83992 1.36553 1.68625 1.18163 0.92105 0.87532 0.87949 0.89462 0.91374 0.90189 0.91492 0.88431 0.90063 0.84112 0.85145 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 10.92 55.43 0.61 -23.51 16 2 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.82 8.89 -34.44 -0.31 -15.13 16 8 H 0.08 2.11 7.81 -52.49 -0.41 1.70 16 9 C 0.30 8.00 2.42 -29.03 -0.07 7.93 16 10 H 0.08 2.22 7.15 -51.93 -0.37 1.85 16 11 O -0.35 -8.36 9.85 -41.28 -0.41 -8.77 16 12 C 0.48 10.24 7.71 36.01 0.28 10.51 16 13 O -0.51 -11.73 13.33 -18.75 -0.25 -11.98 16 14 C -0.13 -2.13 6.31 -91.92 -0.58 -2.71 16 15 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 16 C -0.14 -1.76 10.23 -26.94 -0.28 -2.04 16 17 C -0.13 -1.74 2.88 -154.73 -0.45 -2.18 16 18 C -0.10 -1.03 8.10 -26.14 -0.21 -1.25 16 19 C -0.14 -1.60 8.08 -25.81 -0.21 -1.80 16 20 C -0.11 -1.50 7.63 -26.13 -0.20 -1.70 16 21 C 0.03 0.70 5.54 -35.62 -0.20 0.50 16 22 C -0.18 -4.50 9.16 -39.70 -0.36 -4.86 16 23 C -0.22 -4.72 10.91 -39.71 -0.43 -5.15 16 24 C -0.09 -1.86 12.09 29.41 0.36 -1.50 16 25 O -0.18 -4.42 10.65 4.51 0.05 -4.37 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.66 5.84 -51.93 -0.30 1.35 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.14 3.62 7.85 -52.49 -0.41 3.21 16 36 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 37 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -30.82 319.06 -7.83 -38.65 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.86 Total: 6.76 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.75 Total: -17.57 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.61 Total: -23.51 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.61 Total: -25.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.82 -7.83 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds