Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00280 * 2 1 4 4 H 1.48509 * 109.47087 * 239.99712 * 3 2 1 5 5 H 1.48495 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47600 * 119.99980 * 3 2 1 7 7 C 1.37883 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99601 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46630 * 59.99953 * 9 7 2 11 11 O 1.45199 * 109.46720 * 179.97438 * 9 7 2 12 12 C 1.34233 * 116.99493 * 210.00052 * 11 9 7 13 13 O 1.20826 * 120.00434 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99708 * 180.02562 * 12 11 9 15 15 H 1.09004 * 115.58042 * 34.37632 * 14 12 11 16 16 C 1.53124 * 117.51296 * 248.60652 * 14 12 11 17 17 C 1.52463 * 59.91303 * 252.57250 * 16 14 12 18 18 C 1.53253 * 128.58661 * 242.37621 * 17 16 14 19 19 C 1.53884 * 86.88536 * 194.88792 * 18 17 16 20 20 C 1.53255 * 128.58200 * 117.57682 * 17 16 14 21 21 C 1.50699 * 109.47081 * 299.99818 * 9 7 2 22 22 C 1.34516 * 125.79007 * 99.71809 * 21 9 7 23 23 C 1.41375 * 106.83829 * 179.88829 * 22 21 9 24 24 C 1.34510 * 106.84559 * 0.37105 * 23 22 21 25 25 O 1.34300 * 125.78774 * 280.02646 * 21 9 7 26 26 H 0.97003 * 119.99583 * 0.02562 * 1 2 3 27 27 H 1.09002 * 117.51408 * 145.10348 * 16 14 12 28 28 H 1.08998 * 117.51142 * 0.04328 * 16 14 12 29 29 H 1.09000 * 113.64538 * 309.38960 * 18 17 16 30 30 H 1.09011 * 113.64293 * 80.38953 * 18 17 16 31 31 H 1.08996 * 113.59311 * 270.39425 * 19 18 17 32 32 H 1.09002 * 113.66108 * 139.58400 * 19 18 17 33 33 H 1.08999 * 113.65298 * 279.60951 * 20 17 16 34 34 H 1.08997 * 113.64902 * 50.62025 * 20 17 16 35 35 H 1.08001 * 126.57689 * 0.02562 * 22 21 9 36 36 H 1.08008 * 126.58039 * 180.16581 * 23 22 21 37 37 H 1.07997 * 125.79246 * 179.74911 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8897 11 8 2.1945 -3.6028 0.0005 12 6 1.8031 -4.7390 -0.5975 13 8 0.7086 -4.8090 -1.1046 14 6 2.7289 -5.9275 -0.6365 15 1 3.3678 -6.0553 0.2374 16 6 3.3021 -6.3334 -1.9972 17 6 2.2278 -7.1885 -1.3345 18 6 2.3206 -8.6438 -0.8629 19 6 0.7839 -8.6277 -0.7825 20 6 0.8148 -7.5060 -1.8358 21 6 0.3841 -2.5787 1.2307 22 6 -0.9351 -2.3203 1.2816 23 6 -1.3400 -2.5196 2.6213 24 6 -0.2427 -2.8798 3.3108 25 8 0.7987 -2.9139 2.4633 26 1 -0.4850 0.8401 -0.0004 27 1 4.3179 -6.7280 -2.0182 28 1 3.0100 -5.7402 -2.8637 29 1 2.7117 -9.3243 -1.6192 30 1 2.8079 -8.7594 0.1053 31 1 0.4011 -8.3060 0.1860 32 1 0.3176 -9.5467 -1.1375 33 1 0.0948 -6.7096 -1.6476 34 1 0.7868 -7.8700 -2.8628 35 1 -1.5644 -2.0206 0.4567 36 1 -2.3384 -2.4017 3.0163 37 1 -0.2052 -3.1033 4.3667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -36.970948 kcal Electronic energy + Delta-G solvation = -21520.789594 eV Core-core repulsion = 18231.160888 eV Total energy + Delta-G solvation = -3289.628706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.21318 -41.66719 -39.90853 -37.42945 -35.32937 -34.68864 -33.58285 -31.61208 -28.68067 -26.62029 -26.38082 -24.56552 -23.61780 -22.47091 -21.86735 -21.08991 -19.51132 -19.01142 -18.51472 -18.06505 -17.28091 -16.81844 -16.58444 -16.33293 -16.08962 -16.01885 -14.98033 -14.82883 -14.15182 -13.84630 -13.53789 -13.52433 -13.34282 -13.17884 -13.05441 -12.91791 -12.82113 -12.47870 -12.36202 -12.21401 -12.04803 -11.53094 -11.39846 -11.06916 -10.96177 -10.82494 -10.64982 -10.55160 -9.15188 -8.26497 -6.55754 1.06027 1.15297 1.37555 1.42408 1.49315 1.79498 2.07406 2.36647 2.39107 2.70572 2.98442 3.45008 3.55836 3.76883 3.85985 3.95580 4.01464 4.22082 4.36783 4.46672 4.52900 4.58790 4.65333 4.77860 4.85403 4.90293 4.98878 5.08870 5.11953 5.23478 5.30346 5.35979 5.40330 5.43917 5.52868 5.65384 5.81221 5.95104 6.45359 6.55602 6.91490 7.16706 8.70506 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.005642 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.063633 B = 4961.469243 C = 5800.930978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.302 3.698 10 H 0.041 0.959 11 O -0.358 6.358 12 C 0.473 3.527 13 O -0.539 6.539 14 C -0.159 4.159 15 H 0.150 0.850 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.078 4.078 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.004 4.004 22 C -0.193 4.193 23 C -0.227 4.227 24 C -0.070 4.070 25 O -0.196 6.196 26 H 0.271 0.729 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.167 0.833 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -14.021 0.678 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.091 0.909 9 C 0.248 3.752 10 H 0.058 0.942 11 O -0.274 6.274 12 C 0.318 3.682 13 O -0.430 6.430 14 C -0.177 4.177 15 H 0.167 0.833 16 C -0.154 4.154 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.054 4.054 22 C -0.213 4.213 23 C -0.246 4.246 24 C -0.137 4.137 25 O -0.093 6.093 26 H 0.080 0.920 27 H 0.164 0.836 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.184 0.816 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.858 -13.952 0.604 14.488 hybrid contribution -0.548 1.664 -0.008 1.752 sum 3.311 -12.287 0.596 12.740 Atomic orbital electron populations 1.70160 1.07255 1.28600 1.46553 1.25848 0.96054 1.02838 0.93117 0.85250 0.78189 0.76747 0.79366 1.18635 1.20026 1.19382 1.21125 0.94132 0.88791 1.55588 0.90871 1.18732 0.85658 0.82682 0.88144 0.94191 1.86530 1.48008 1.22540 1.70342 1.23570 0.86461 0.84389 0.73755 1.90531 1.24025 1.83369 1.45063 1.21764 1.02898 0.90753 1.02332 0.83286 1.23070 1.00387 1.00537 0.91371 1.22489 0.97307 0.92026 1.01109 1.22536 0.95905 0.90545 1.02462 1.22737 0.97301 0.98782 0.98485 1.22743 0.94331 0.98876 1.00006 1.23327 0.94501 1.02439 0.85150 1.21288 0.94627 1.07032 0.98360 1.22045 1.01076 1.08098 0.93374 1.24700 0.84554 1.07207 0.97197 1.83961 1.38194 1.69059 1.18067 0.91973 0.83622 0.89237 0.86446 0.90113 0.91848 0.89071 0.92756 0.88231 0.86029 0.81560 0.74301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.28 10.92 21.45 0.23 -51.04 16 2 C 0.02 1.38 5.30 84.66 0.45 1.83 16 3 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.56 -32.60 8.89 25.60 0.23 -32.37 16 8 H 0.07 4.17 7.81 -2.91 -0.02 4.15 16 9 C 0.30 17.25 2.42 29.10 0.07 17.32 16 10 H 0.04 2.52 7.15 -2.39 -0.02 2.51 16 11 O -0.36 -18.39 9.85 -49.52 -0.49 -18.88 16 12 C 0.47 21.19 7.71 71.24 0.55 21.74 16 13 O -0.54 -26.80 13.33 21.96 0.29 -26.51 16 14 C -0.16 -5.01 6.31 -11.63 -0.07 -5.09 16 15 H 0.15 4.07 8.14 -2.39 -0.02 4.06 16 16 C -0.12 -2.84 10.23 30.46 0.31 -2.53 16 17 C -0.13 -3.29 2.88 -52.33 -0.15 -3.45 16 18 C -0.08 -1.37 8.10 30.98 0.25 -1.12 16 19 C -0.14 -2.90 8.08 31.19 0.25 -2.65 16 20 C -0.12 -3.34 7.63 30.98 0.24 -3.11 16 21 C 0.00 -0.20 5.54 24.83 0.14 -0.06 16 22 C -0.19 -10.11 9.16 22.19 0.20 -9.91 16 23 C -0.23 -9.61 10.91 22.19 0.24 -9.37 16 24 C -0.07 -2.80 12.09 66.97 0.81 -1.99 16 25 O -0.20 -9.84 10.65 -1.35 -0.01 -9.86 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.97 5.84 -2.39 -0.01 1.96 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.12 6.69 7.85 -2.91 -0.02 6.67 16 36 H 0.17 5.68 8.06 -2.91 -0.02 5.66 16 37 H 0.24 6.49 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -72.37 319.06 6.64 -65.73 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.07 Total: 25.78 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 3.52 Total: -30.77 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.23 Total: -51.04 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.21 Total: -55.24 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.37 6.64 -65.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.762 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds