Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47176 * 265.54347 * 3 2 1 5 5 H 1.48491 * 109.47257 * 25.54676 * 3 2 1 6 6 H 1.48501 * 109.47066 * 145.54820 * 3 2 1 7 7 C 1.37877 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00436 * 353.41699 * 7 2 1 9 9 C 1.50703 * 119.99968 * 173.42327 * 7 2 1 10 10 H 1.08998 * 109.47063 * 55.51794 * 9 7 2 11 11 O 1.45205 * 109.46683 * 295.52004 * 9 7 2 12 12 C 1.34236 * 116.99439 * 150.00237 * 11 9 7 13 13 O 1.20822 * 120.00305 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99572 * 179.97438 * 12 11 9 15 15 H 1.08998 * 115.56059 * 325.73567 * 14 12 11 16 16 C 1.53124 * 117.50796 * 111.53448 * 14 12 11 17 17 C 1.52462 * 117.51058 * 179.97438 * 14 12 11 18 18 C 1.53259 * 128.58139 * 134.95639 * 17 14 12 19 19 C 1.53895 * 86.87839 * 194.88601 * 18 17 14 20 20 C 1.53253 * 128.58652 * 10.15311 * 17 14 12 21 21 C 1.50697 * 109.47078 * 175.52184 * 9 7 2 22 22 C 1.34518 * 125.78821 * 264.67297 * 21 9 7 23 23 C 1.41379 * 106.83728 * 179.89253 * 22 21 9 24 24 C 1.34516 * 106.84689 * 0.37407 * 23 22 21 25 25 O 1.34308 * 108.41791 * 359.76924 * 24 23 22 26 26 H 0.97003 * 120.00271 * 359.97438 * 1 2 3 27 27 H 1.09006 * 117.51212 * 214.89353 * 16 14 12 28 28 H 1.08994 * 117.51817 * 0.02562 * 16 14 12 29 29 H 1.09000 * 113.64721 * 309.37882 * 18 17 14 30 30 H 1.08994 * 113.64812 * 80.38896 * 18 17 14 31 31 H 1.09000 * 113.58490 * 270.38773 * 19 18 17 32 32 H 1.09002 * 113.66020 * 139.58274 * 19 18 17 33 33 H 1.08999 * 113.64637 * 279.61099 * 20 17 14 34 34 H 1.08999 * 113.64740 * 50.61228 * 20 17 14 35 35 H 1.07998 * 126.57903 * 0.03155 * 22 21 9 36 36 H 1.08001 * 126.57730 * 180.17012 * 23 22 21 37 37 H 1.07992 * 125.79478 * 179.79746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5908 1.9920 -1.3958 5 1 1.4027 2.6780 0.6037 6 1 3.4964 1.4692 0.7920 7 6 2.0044 -1.1941 -0.0005 8 1 1.4698 -2.1264 0.1063 9 6 3.5040 -1.1983 -0.1500 10 1 3.9479 -0.5703 0.6224 11 8 3.8613 -0.6810 -1.4589 12 6 5.0385 -0.0441 -1.5618 13 8 5.7465 0.0776 -0.5903 14 6 5.4768 0.5193 -2.8890 15 1 5.1761 -0.0542 -3.7658 16 6 5.5358 2.0433 -3.0257 17 6 6.8235 1.2321 -2.9413 18 6 7.9373 1.0956 -3.9852 19 6 8.8558 1.8057 -2.9750 20 6 7.9185 1.2864 -1.8705 21 6 4.0189 -2.6076 -0.0092 22 6 4.4895 -3.1638 1.1216 23 6 4.8591 -4.4906 0.8023 24 6 4.6000 -4.6632 -0.5063 25 8 4.0911 -3.5194 -0.9927 26 1 -0.4851 0.8400 0.0004 27 1 5.2736 2.4726 -3.9928 28 1 5.2580 2.6381 -2.1557 29 1 8.2240 0.0633 -4.1862 30 1 7.7584 1.6713 -4.8932 31 1 8.8551 2.8912 -3.0730 32 1 9.8607 1.3860 -2.9273 33 1 7.7246 2.0150 -1.0834 34 1 8.1999 0.3072 -1.4829 35 1 4.5677 -2.6888 2.0884 36 1 5.2734 -5.2237 1.4786 37 1 4.7715 -5.5682 -1.0701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123462984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = -17.667164 kcal Electronic energy + Delta-G solvation = -21642.980034 eV Core-core repulsion = 18354.188403 eV Total energy + Delta-G solvation = -3288.791631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.86133 -40.19301 -38.62754 -35.69661 -33.61211 -33.00594 -32.31395 -30.52166 -27.17559 -25.66577 -24.63612 -23.06746 -22.66719 -21.11243 -20.16230 -19.45877 -18.24980 -17.41417 -17.19331 -16.64447 -15.77532 -15.38129 -15.20639 -15.12333 -14.85261 -14.36265 -13.57323 -13.16986 -12.66918 -12.42512 -12.37191 -12.14926 -12.07129 -11.92104 -11.65216 -11.55042 -11.44418 -11.26474 -10.92180 -10.34385 -10.18150 -10.04677 -9.88776 -9.78020 -9.68905 -9.51352 -9.27195 -8.89067 -7.75795 -6.45315 -4.54230 2.41324 2.74585 3.12947 3.19090 3.24735 3.27875 3.46957 3.75369 3.85873 4.17109 4.51326 4.63109 4.80224 4.84656 4.89750 5.07594 5.34717 5.36083 5.58099 5.61970 5.62933 5.71040 5.75458 5.80957 5.85381 5.88429 6.09290 6.17646 6.30367 6.32990 6.40759 6.41510 6.55250 6.71717 7.08470 7.11154 7.46062 7.87752 8.08425 8.58431 8.67107 9.11979 10.63437 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.007804 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.617405 B = 3587.184932 C = 5065.768778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.096 3.904 3 Si 0.865 3.135 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.513 4.513 8 H 0.092 0.908 9 C 0.253 3.747 10 H 0.081 0.919 11 O -0.347 6.347 12 C 0.476 3.524 13 O -0.518 6.518 14 C -0.155 4.155 15 H 0.131 0.869 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.096 4.096 19 C -0.141 4.141 20 C -0.085 4.085 21 C 0.031 3.969 22 C -0.226 4.226 23 C -0.212 4.212 24 C -0.070 4.070 25 O -0.166 6.166 26 H 0.274 0.726 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 1.072 -5.807 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.112 4.112 3 Si 0.691 3.309 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.549 4.549 8 H 0.110 0.890 9 C 0.202 3.798 10 H 0.098 0.902 11 O -0.264 6.264 12 C 0.319 3.681 13 O -0.409 6.409 14 C -0.174 4.174 15 H 0.149 0.851 16 C -0.159 4.159 17 C -0.132 4.132 18 C -0.134 4.134 19 C -0.178 4.178 20 C -0.122 4.122 21 C -0.021 4.021 22 C -0.245 4.245 23 C -0.231 4.231 24 C -0.137 4.137 25 O -0.061 6.061 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 13.381 1.229 -5.779 14.627 hybrid contribution 0.176 0.486 0.286 0.591 sum 13.557 1.715 -5.492 14.728 Atomic orbital electron populations 1.69886 1.06388 1.28235 1.45114 1.24971 0.94785 0.99409 0.92058 0.86952 0.80870 0.83097 0.80014 1.18736 1.20664 1.18162 1.20864 0.87178 0.95982 1.50839 0.89007 1.19791 0.96402 0.82300 0.81337 0.90204 1.87089 1.34170 1.64473 1.40641 1.22590 0.80639 0.75679 0.89174 1.90558 1.54413 1.56528 1.39361 1.21819 1.02387 0.96685 0.96529 0.85115 1.22820 0.97977 0.91204 1.03856 1.22379 0.87559 1.02732 1.00524 1.22495 0.93736 1.01094 0.96035 1.22802 0.97726 1.00212 0.97057 1.22354 0.92627 1.02002 0.95221 1.23204 0.99742 0.92605 0.86521 1.21415 1.08067 0.95474 0.99554 1.21681 1.07663 0.97688 0.96078 1.23855 1.04730 0.90004 0.95127 1.84080 1.63962 1.19901 1.38198 0.91576 0.87302 0.88184 0.89564 0.91215 0.90227 0.91329 0.91234 0.89330 0.83885 0.84155 0.78941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.96 55.43 0.77 -24.34 16 2 C 0.10 2.72 5.47 -17.82 -0.10 2.62 16 3 Si 0.87 21.29 26.00 -169.99 -4.42 16.87 16 4 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.51 -14.56 9.31 -34.44 -0.32 -14.88 16 8 H 0.09 2.80 7.99 -52.49 -0.42 2.38 16 9 C 0.25 6.48 1.72 -29.04 -0.05 6.43 16 10 H 0.08 2.09 5.76 -51.93 -0.30 1.79 16 11 O -0.35 -8.58 8.55 -42.06 -0.36 -8.94 16 12 C 0.48 10.45 7.03 36.01 0.25 10.70 16 13 O -0.52 -12.02 14.36 -18.75 -0.27 -12.29 16 14 C -0.16 -2.67 6.30 -91.98 -0.58 -3.25 16 15 H 0.13 2.02 8.14 -51.93 -0.42 1.59 16 16 C -0.12 -1.79 10.23 -26.96 -0.28 -2.07 16 17 C -0.13 -1.88 2.87 -154.82 -0.44 -2.33 16 18 C -0.10 -1.06 8.10 -26.13 -0.21 -1.27 16 19 C -0.14 -1.48 8.08 -25.81 -0.21 -1.69 16 20 C -0.08 -1.19 6.48 -26.14 -0.17 -1.36 16 21 C 0.03 0.72 6.13 -35.62 -0.22 0.50 16 22 C -0.23 -4.75 10.81 -39.70 -0.43 -5.18 16 23 C -0.21 -3.77 10.91 -39.70 -0.43 -4.20 16 24 C -0.07 -1.23 12.09 29.42 0.36 -0.87 16 25 O -0.17 -3.71 10.63 2.02 0.02 -3.69 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 35 H 0.14 2.78 8.06 -52.49 -0.42 2.36 16 36 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -31.74 319.17 -7.23 -38.97 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.96 Total: 5.45 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.83 Total: -16.84 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.77 Total: -24.34 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.61 Total: -24.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.42 Total: 16.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.74 -7.23 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.298 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds