Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47176 * 265.54347 * 3 2 1 5 5 H 1.48491 * 109.47257 * 25.54676 * 3 2 1 6 6 H 1.48501 * 109.47066 * 145.54820 * 3 2 1 7 7 C 1.37877 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00436 * 353.41699 * 7 2 1 9 9 C 1.50703 * 119.99968 * 173.42327 * 7 2 1 10 10 H 1.08998 * 109.47063 * 55.51794 * 9 7 2 11 11 O 1.45205 * 109.46683 * 295.52004 * 9 7 2 12 12 C 1.34236 * 116.99439 * 150.00237 * 11 9 7 13 13 O 1.20822 * 120.00305 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99572 * 179.97438 * 12 11 9 15 15 H 1.08998 * 115.56059 * 325.73567 * 14 12 11 16 16 C 1.53124 * 117.50796 * 111.53448 * 14 12 11 17 17 C 1.52462 * 117.51058 * 179.97438 * 14 12 11 18 18 C 1.53259 * 128.58139 * 134.95639 * 17 14 12 19 19 C 1.53895 * 86.87839 * 194.88601 * 18 17 14 20 20 C 1.53253 * 128.58652 * 10.15311 * 17 14 12 21 21 C 1.50697 * 109.47078 * 175.52184 * 9 7 2 22 22 C 1.34518 * 125.78821 * 264.67297 * 21 9 7 23 23 C 1.41379 * 106.83728 * 179.89253 * 22 21 9 24 24 C 1.34516 * 106.84689 * 0.37407 * 23 22 21 25 25 O 1.34308 * 108.41791 * 359.76924 * 24 23 22 26 26 H 0.97003 * 120.00271 * 359.97438 * 1 2 3 27 27 H 1.09006 * 117.51212 * 214.89353 * 16 14 12 28 28 H 1.08994 * 117.51817 * 0.02562 * 16 14 12 29 29 H 1.09000 * 113.64721 * 309.37882 * 18 17 14 30 30 H 1.08994 * 113.64812 * 80.38896 * 18 17 14 31 31 H 1.09000 * 113.58490 * 270.38773 * 19 18 17 32 32 H 1.09002 * 113.66020 * 139.58274 * 19 18 17 33 33 H 1.08999 * 113.64637 * 279.61099 * 20 17 14 34 34 H 1.08999 * 113.64740 * 50.61228 * 20 17 14 35 35 H 1.07998 * 126.57903 * 0.03155 * 22 21 9 36 36 H 1.08001 * 126.57730 * 180.17012 * 23 22 21 37 37 H 1.07992 * 125.79478 * 179.79746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5908 1.9920 -1.3958 5 1 1.4027 2.6780 0.6037 6 1 3.4964 1.4692 0.7920 7 6 2.0044 -1.1941 -0.0005 8 1 1.4698 -2.1264 0.1063 9 6 3.5040 -1.1983 -0.1500 10 1 3.9479 -0.5703 0.6224 11 8 3.8613 -0.6810 -1.4589 12 6 5.0385 -0.0441 -1.5618 13 8 5.7465 0.0776 -0.5903 14 6 5.4768 0.5193 -2.8890 15 1 5.1761 -0.0542 -3.7658 16 6 5.5358 2.0433 -3.0257 17 6 6.8235 1.2321 -2.9413 18 6 7.9373 1.0956 -3.9852 19 6 8.8558 1.8057 -2.9750 20 6 7.9185 1.2864 -1.8705 21 6 4.0189 -2.6076 -0.0092 22 6 4.4895 -3.1638 1.1216 23 6 4.8591 -4.4906 0.8023 24 6 4.6000 -4.6632 -0.5063 25 8 4.0911 -3.5194 -0.9927 26 1 -0.4851 0.8400 0.0004 27 1 5.2736 2.4726 -3.9928 28 1 5.2580 2.6381 -2.1557 29 1 8.2240 0.0633 -4.1862 30 1 7.7584 1.6713 -4.8932 31 1 8.8551 2.8912 -3.0730 32 1 9.8607 1.3860 -2.9273 33 1 7.7246 2.0150 -1.0834 34 1 8.1999 0.3072 -1.4829 35 1 4.5677 -2.6888 2.0884 36 1 5.2734 -5.2237 1.4786 37 1 4.7715 -5.5682 -1.0701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = -35.822032 kcal Electronic energy + Delta-G solvation = -21643.767288 eV Core-core repulsion = 18354.188403 eV Total energy + Delta-G solvation = -3289.578885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.46929 -41.69285 -40.01389 -37.49879 -35.16324 -34.72488 -33.95412 -32.32461 -28.98559 -26.66334 -26.22385 -24.50256 -23.99970 -22.67523 -21.71729 -21.09968 -19.63305 -19.22692 -18.86722 -18.32154 -17.53858 -16.83131 -16.77934 -16.38401 -16.12579 -16.06053 -15.25008 -14.93612 -14.28304 -14.13522 -13.72263 -13.58376 -13.48764 -13.31867 -13.25929 -13.03257 -12.89601 -12.50976 -12.38882 -12.14041 -11.97728 -11.66207 -11.52285 -11.14509 -11.12655 -11.00431 -10.83788 -10.78699 -9.37483 -8.62578 -6.77155 0.81242 1.09093 1.16304 1.21171 1.27992 1.65476 1.82820 2.09532 2.20733 2.61940 2.84489 3.41724 3.57754 3.64277 3.80894 3.84343 3.92023 4.06248 4.14140 4.23469 4.38684 4.47262 4.54508 4.67284 4.82528 4.85319 4.87358 4.90580 4.98120 5.02211 5.09129 5.11608 5.16540 5.32591 5.49034 5.59049 5.70118 5.94342 6.26526 6.31613 6.86322 6.94040 8.50944 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.007804 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.617405 B = 3587.184932 C = 5065.768778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.918 3.082 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.264 3.736 10 H 0.065 0.935 11 O -0.362 6.362 12 C 0.467 3.533 13 O -0.538 6.538 14 C -0.183 4.183 15 H 0.147 0.853 16 C -0.113 4.113 17 C -0.127 4.127 18 C -0.084 4.084 19 C -0.123 4.123 20 C -0.102 4.102 21 C -0.021 4.021 22 C -0.227 4.227 23 C -0.215 4.215 24 C -0.056 4.056 25 O -0.191 6.191 26 H 0.281 0.719 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.182 0.818 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.008 1.380 -7.544 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.211 3.789 10 H 0.083 0.917 11 O -0.280 6.280 12 C 0.313 3.687 13 O -0.430 6.430 14 C -0.202 4.202 15 H 0.165 0.835 16 C -0.149 4.149 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.139 4.139 21 C -0.071 4.071 22 C -0.246 4.246 23 C -0.233 4.233 24 C -0.122 4.122 25 O -0.087 6.087 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.909 1.542 -7.518 17.664 hybrid contribution -0.530 0.236 0.869 1.045 sum 15.380 1.779 -6.649 16.850 Atomic orbital electron populations 1.69960 1.07630 1.29492 1.46615 1.25647 0.95462 1.02331 0.91539 0.86143 0.79433 0.79737 0.80620 1.17368 1.18666 1.19100 1.20887 0.88955 0.94778 1.51968 0.92799 1.19250 0.94457 0.83983 0.81184 0.91721 1.86968 1.36084 1.65363 1.39541 1.23508 0.79384 0.74848 0.91011 1.90533 1.54563 1.57153 1.40713 1.21951 1.05708 0.98547 0.93972 0.83510 1.23002 0.97905 0.88956 1.05087 1.22748 0.87177 1.00362 1.02398 1.22550 0.91316 1.02047 0.96199 1.22766 0.97803 1.01129 0.94348 1.22449 0.94507 1.00991 0.95988 1.22944 1.03441 0.92713 0.88037 1.21797 1.06639 0.97175 0.99007 1.22114 1.07513 0.96778 0.96910 1.24984 1.01740 0.89686 0.95806 1.84035 1.64919 1.21178 1.38592 0.90878 0.83643 0.89723 0.88946 0.88613 0.88709 0.89612 0.92812 0.91134 0.83312 0.80039 0.73765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.39 13.96 21.45 0.30 -54.09 16 2 C 0.06 3.25 5.47 84.66 0.46 3.71 16 3 Si 0.92 45.02 26.00 68.60 1.78 46.81 16 4 H -0.25 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -13.31 6.52 99.48 0.65 -12.66 16 7 C -0.53 -31.82 9.31 25.60 0.24 -31.58 16 8 H 0.05 3.54 7.99 -2.91 -0.02 3.51 16 9 C 0.26 14.13 1.72 29.10 0.05 14.18 16 10 H 0.07 3.58 5.76 -2.39 -0.01 3.57 16 11 O -0.36 -18.51 8.55 -48.81 -0.42 -18.93 16 12 C 0.47 20.87 7.03 71.24 0.50 21.37 16 13 O -0.54 -25.70 14.36 21.98 0.32 -25.39 16 14 C -0.18 -6.09 6.30 -11.68 -0.07 -6.17 16 15 H 0.15 4.32 8.14 -2.39 -0.02 4.30 16 16 C -0.11 -3.06 10.23 30.44 0.31 -2.75 16 17 C -0.13 -3.35 2.87 -52.38 -0.15 -3.50 16 18 C -0.08 -1.51 8.10 30.98 0.25 -1.26 16 19 C -0.12 -2.18 8.08 31.19 0.25 -1.92 16 20 C -0.10 -2.75 6.48 30.98 0.20 -2.55 16 21 C -0.02 -1.02 6.13 24.83 0.15 -0.87 16 22 C -0.23 -9.64 10.81 22.19 0.24 -9.40 16 23 C -0.21 -7.18 10.91 22.19 0.24 -6.94 16 24 C -0.06 -1.85 12.09 66.97 0.81 -1.04 16 25 O -0.19 -8.59 10.63 0.90 0.01 -8.58 16 26 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.15 2.85 8.14 -2.38 -0.02 2.83 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 35 H 0.15 5.93 8.06 -2.91 -0.02 5.90 16 36 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.25 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -74.03 319.17 6.49 -67.55 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.01 Total: 21.35 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.49 Total: -28.72 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.30 Total: -54.09 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.09 Total: -52.90 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.78 Total: 46.81 kcal Total: -74.03 6.49 -67.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.725 kcal (2) G-P(sol) polarization free energy of solvation -74.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds