Wall clock time and date at job start Mon Mar 30 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47394 * 264.88354 * 3 2 1 5 5 H 1.48503 * 109.47223 * 24.88704 * 3 2 1 6 6 H 1.48510 * 109.46961 * 144.88558 * 3 2 1 7 7 C 1.37877 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00415 * 1.25676 * 7 2 1 9 9 C 1.50697 * 120.00234 * 181.26028 * 7 2 1 10 10 H 1.09000 * 109.47267 * 333.48449 * 9 7 2 11 11 O 1.45203 * 109.47293 * 93.48551 * 9 7 2 12 12 C 1.34232 * 117.00008 * 210.00500 * 11 9 7 13 13 O 1.20822 * 120.00173 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99748 * 179.97438 * 12 11 9 15 15 H 1.08994 * 115.55957 * 325.73692 * 14 12 11 16 16 C 1.53125 * 117.50953 * 111.53335 * 14 12 11 17 17 C 1.52462 * 117.51311 * 179.97438 * 14 12 11 18 18 C 1.53254 * 128.58568 * 134.95024 * 17 14 12 19 19 C 1.53879 * 86.88263 * 194.89345 * 18 17 14 20 20 C 1.53262 * 128.58168 * 10.15808 * 17 14 12 21 21 C 1.50699 * 109.47702 * 213.48516 * 9 7 2 22 22 C 1.34509 * 125.78874 * 96.35717 * 21 9 7 23 23 C 1.41380 * 106.84411 * 179.89731 * 22 21 9 24 24 C 1.34511 * 106.83946 * 0.37208 * 23 22 21 25 25 O 1.34301 * 125.79204 * 276.67823 * 21 9 7 26 26 H 0.96991 * 120.00312 * 359.97438 * 1 2 3 27 27 H 1.09003 * 117.51573 * 214.89187 * 16 14 12 28 28 H 1.08996 * 117.51603 * 0.02562 * 16 14 12 29 29 H 1.09004 * 113.64485 * 309.39135 * 18 17 14 30 30 H 1.08997 * 113.64651 * 80.39077 * 18 17 14 31 31 H 1.09000 * 113.59257 * 270.39187 * 19 18 17 32 32 H 1.09009 * 113.66233 * 139.58872 * 19 18 17 33 33 H 1.09003 * 113.64225 * 279.60709 * 20 17 14 34 34 H 1.08994 * 113.64596 * 50.60767 * 20 17 14 35 35 H 1.08002 * 126.58177 * 0.03415 * 22 21 9 36 36 H 1.07998 * 126.58570 * 180.16865 * 23 22 21 37 37 H 1.07994 * 125.79733 * 179.75127 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6047 1.9840 -1.3944 5 1 1.3966 2.6814 0.5892 6 1 3.4885 1.4737 0.8054 7 6 2.0045 -1.1940 -0.0005 8 1 1.4648 -2.1293 -0.0215 9 6 3.5112 -1.1942 0.0282 10 1 3.8832 -0.2695 -0.4131 11 8 3.9692 -1.2932 1.4025 12 6 5.1435 -0.7133 1.6968 13 8 5.7683 -0.1425 0.8345 14 6 5.6826 -0.7744 3.1028 15 1 4.9344 -0.7463 3.8949 16 6 6.9370 -1.6190 3.3433 17 6 7.0215 -0.0974 3.3738 18 6 7.4122 0.8150 4.5415 19 6 8.6396 1.2185 3.7057 20 6 7.8242 0.8337 2.4586 21 6 4.0286 -2.3702 -0.7595 22 6 4.4293 -2.3421 -2.0432 23 6 4.8358 -3.6551 -2.3743 24 6 4.6513 -4.4089 -1.2756 25 8 4.1622 -3.6253 -0.3006 26 1 -0.4850 0.8399 0.0004 27 1 7.0142 -2.1468 4.2939 28 1 7.3723 -2.1299 2.4845 29 1 6.7111 1.6322 4.7113 30 1 7.6631 0.2741 5.4539 31 1 9.5089 0.5822 3.8719 32 1 8.8765 2.2811 3.7612 33 1 8.4055 0.3077 1.7013 34 1 7.2378 1.6560 2.0488 35 1 4.4407 -1.4812 -2.6952 36 1 5.2176 -3.9896 -3.3276 37 1 4.8606 -5.4650 -1.1917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123462985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:11 Heat of formation + Delta-G solvation = -22.672030 kcal Electronic energy + Delta-G solvation = -21538.622537 eV Core-core repulsion = 18249.613878 eV Total energy + Delta-G solvation = -3289.008658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82723 -40.14368 -38.57077 -35.62168 -33.59745 -33.09985 -32.28305 -30.50992 -27.17264 -25.65003 -24.65489 -23.05220 -22.61058 -21.09137 -20.16706 -19.40045 -18.25645 -17.44828 -17.11669 -16.70461 -15.66306 -15.29762 -15.17411 -15.14711 -14.90603 -14.27342 -13.78827 -13.06187 -12.68915 -12.41252 -12.19519 -12.15765 -12.09182 -12.00742 -11.59369 -11.52141 -11.39656 -11.31243 -11.00104 -10.32990 -10.18248 -10.01687 -9.77876 -9.74271 -9.69496 -9.49597 -9.23907 -8.98008 -7.73811 -6.51076 -4.60256 2.44046 2.80340 3.06732 3.18683 3.24477 3.29213 3.52515 3.74452 3.90159 4.10312 4.52651 4.65241 4.81558 4.85396 4.90906 5.05286 5.36453 5.38999 5.60817 5.63273 5.64677 5.70860 5.75836 5.83199 5.87134 5.93839 6.11429 6.17952 6.22737 6.33496 6.43455 6.44503 6.57280 6.75495 7.07454 7.14460 7.48065 7.89360 8.06233 8.59841 8.72325 9.05528 10.57634 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.007258 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.699847 B = 3857.076920 C = 5142.636484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.092 3.908 3 Si 0.871 3.129 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.506 4.506 8 H 0.090 0.910 9 C 0.254 3.746 10 H 0.079 0.921 11 O -0.350 6.350 12 C 0.478 3.522 13 O -0.523 6.523 14 C -0.154 4.154 15 H 0.130 0.870 16 C -0.119 4.119 17 C -0.134 4.134 18 C -0.097 4.097 19 C -0.141 4.141 20 C -0.084 4.084 21 C 0.033 3.967 22 C -0.229 4.229 23 C -0.210 4.210 24 C -0.072 4.072 25 O -0.168 6.168 26 H 0.276 0.724 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.671 -1.142 5.329 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.118 4.118 3 Si 0.696 3.304 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.541 4.541 8 H 0.108 0.892 9 C 0.202 3.798 10 H 0.096 0.904 11 O -0.266 6.266 12 C 0.322 3.678 13 O -0.413 6.413 14 C -0.173 4.173 15 H 0.148 0.852 16 C -0.156 4.156 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.178 4.178 20 C -0.122 4.122 21 C -0.018 4.018 22 C -0.249 4.249 23 C -0.229 4.229 24 C -0.140 4.140 25 O -0.063 6.063 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 13.552 -0.975 5.321 14.592 hybrid contribution 0.170 0.710 -0.442 0.853 sum 13.722 -0.265 4.879 14.566 Atomic orbital electron populations 1.69855 1.06372 1.28397 1.44519 1.25119 0.94956 0.99465 0.92211 0.86901 0.80741 0.82813 0.79989 1.19003 1.20178 1.18184 1.20804 0.86120 0.95855 1.51329 0.89240 1.19539 0.94782 0.88870 0.76578 0.90377 1.87111 1.33940 1.68891 1.36663 1.22535 0.80487 0.75557 0.89218 1.90544 1.59195 1.41887 1.49685 1.21810 0.92284 1.08268 0.94962 0.85193 1.22781 0.97516 0.91755 1.03504 1.22370 0.96792 0.94161 1.00049 1.22494 0.97455 0.98011 0.95476 1.22802 0.96750 1.01032 0.97235 1.22345 0.96420 0.98021 0.95385 1.23307 0.99360 0.84108 0.95059 1.21366 1.08825 0.98501 0.96161 1.21661 1.07598 0.93977 0.99692 1.23829 1.05349 0.96907 0.87887 1.84079 1.64402 1.18725 1.39104 0.91399 0.87461 0.88120 0.89572 0.91232 0.90247 0.91369 0.91249 0.89407 0.84057 0.84210 0.78999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.96 55.43 0.77 -23.93 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.87 21.09 26.90 -169.99 -4.57 16.52 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -6.36 6.91 56.52 0.39 -5.97 16 7 C -0.51 -14.33 9.23 -34.44 -0.32 -14.65 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 C 0.25 6.52 1.96 -29.04 -0.06 6.46 16 10 H 0.08 2.04 4.56 -51.93 -0.24 1.80 16 11 O -0.35 -8.64 9.84 -41.82 -0.41 -9.05 16 12 C 0.48 10.48 7.64 36.01 0.27 10.76 16 13 O -0.52 -12.19 14.36 -18.75 -0.27 -12.46 16 14 C -0.15 -2.59 6.30 -91.98 -0.58 -3.17 16 15 H 0.13 2.00 8.14 -51.93 -0.42 1.57 16 16 C -0.12 -1.61 10.23 -26.96 -0.28 -1.88 16 17 C -0.13 -1.89 2.87 -154.81 -0.44 -2.33 16 18 C -0.10 -1.08 8.10 -26.14 -0.21 -1.29 16 19 C -0.14 -1.50 8.08 -25.82 -0.21 -1.71 16 20 C -0.08 -1.19 6.48 -26.14 -0.17 -1.36 16 21 C 0.03 0.79 6.17 -35.63 -0.22 0.57 16 22 C -0.23 -4.91 10.81 -39.71 -0.43 -5.34 16 23 C -0.21 -3.79 10.91 -39.70 -0.43 -4.22 16 24 C -0.07 -1.29 12.09 29.41 0.36 -0.93 16 25 O -0.17 -3.75 10.64 2.90 0.03 -3.72 16 26 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.37 8.05 -51.93 -0.42 0.96 16 35 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 36 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -31.70 321.46 -7.29 -39.00 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.87 Total: 5.44 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.81 Total: -16.64 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.77 Total: -23.93 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.65 Total: -25.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.57 Total: 16.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.70 -7.29 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.324 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds