Wall clock time and date at job start Mon Mar 30 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47394 * 264.88354 * 3 2 1 5 5 H 1.48503 * 109.47223 * 24.88704 * 3 2 1 6 6 H 1.48510 * 109.46961 * 144.88558 * 3 2 1 7 7 C 1.37877 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00415 * 1.25676 * 7 2 1 9 9 C 1.50697 * 120.00234 * 181.26028 * 7 2 1 10 10 H 1.09000 * 109.47267 * 333.48449 * 9 7 2 11 11 O 1.45203 * 109.47293 * 93.48551 * 9 7 2 12 12 C 1.34232 * 117.00008 * 210.00500 * 11 9 7 13 13 O 1.20822 * 120.00173 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99748 * 179.97438 * 12 11 9 15 15 H 1.08994 * 115.55957 * 325.73692 * 14 12 11 16 16 C 1.53125 * 117.50953 * 111.53335 * 14 12 11 17 17 C 1.52462 * 117.51311 * 179.97438 * 14 12 11 18 18 C 1.53254 * 128.58568 * 134.95024 * 17 14 12 19 19 C 1.53879 * 86.88263 * 194.89345 * 18 17 14 20 20 C 1.53262 * 128.58168 * 10.15808 * 17 14 12 21 21 C 1.50699 * 109.47702 * 213.48516 * 9 7 2 22 22 C 1.34509 * 125.78874 * 96.35717 * 21 9 7 23 23 C 1.41380 * 106.84411 * 179.89731 * 22 21 9 24 24 C 1.34511 * 106.83946 * 0.37208 * 23 22 21 25 25 O 1.34301 * 125.79204 * 276.67823 * 21 9 7 26 26 H 0.96991 * 120.00312 * 359.97438 * 1 2 3 27 27 H 1.09003 * 117.51573 * 214.89187 * 16 14 12 28 28 H 1.08996 * 117.51603 * 0.02562 * 16 14 12 29 29 H 1.09004 * 113.64485 * 309.39135 * 18 17 14 30 30 H 1.08997 * 113.64651 * 80.39077 * 18 17 14 31 31 H 1.09000 * 113.59257 * 270.39187 * 19 18 17 32 32 H 1.09009 * 113.66233 * 139.58872 * 19 18 17 33 33 H 1.09003 * 113.64225 * 279.60709 * 20 17 14 34 34 H 1.08994 * 113.64596 * 50.60767 * 20 17 14 35 35 H 1.08002 * 126.58177 * 0.03415 * 22 21 9 36 36 H 1.07998 * 126.58570 * 180.16865 * 23 22 21 37 37 H 1.07994 * 125.79733 * 179.75127 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6047 1.9840 -1.3944 5 1 1.3966 2.6814 0.5892 6 1 3.4885 1.4737 0.8054 7 6 2.0045 -1.1940 -0.0005 8 1 1.4648 -2.1293 -0.0215 9 6 3.5112 -1.1942 0.0282 10 1 3.8832 -0.2695 -0.4131 11 8 3.9692 -1.2932 1.4025 12 6 5.1435 -0.7133 1.6968 13 8 5.7683 -0.1425 0.8345 14 6 5.6826 -0.7744 3.1028 15 1 4.9344 -0.7463 3.8949 16 6 6.9370 -1.6190 3.3433 17 6 7.0215 -0.0974 3.3738 18 6 7.4122 0.8150 4.5415 19 6 8.6396 1.2185 3.7057 20 6 7.8242 0.8337 2.4586 21 6 4.0286 -2.3702 -0.7595 22 6 4.4293 -2.3421 -2.0432 23 6 4.8358 -3.6551 -2.3743 24 6 4.6513 -4.4089 -1.2756 25 8 4.1622 -3.6253 -0.3006 26 1 -0.4850 0.8399 0.0004 27 1 7.0142 -2.1468 4.2939 28 1 7.3723 -2.1299 2.4845 29 1 6.7111 1.6322 4.7113 30 1 7.6631 0.2741 5.4539 31 1 9.5089 0.5822 3.8719 32 1 8.8765 2.2811 3.7612 33 1 8.4055 0.3077 1.7013 34 1 7.2378 1.6560 2.0488 35 1 4.4407 -1.4812 -2.6952 36 1 5.2176 -3.9896 -3.3276 37 1 4.8606 -5.4650 -1.1917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:11 Heat of formation + Delta-G solvation = -40.755809 kcal Electronic energy + Delta-G solvation = -21539.406708 eV Core-core repulsion = 18249.613878 eV Total energy + Delta-G solvation = -3289.792830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45013 -41.62556 -39.96825 -37.42890 -35.23447 -34.70576 -33.93203 -32.32081 -28.98230 -26.65998 -26.23256 -24.42118 -23.97965 -22.67126 -21.72800 -21.04415 -19.68616 -19.17995 -18.79612 -18.41831 -17.38797 -16.90904 -16.72211 -16.33011 -16.11912 -15.99938 -15.40764 -14.93666 -14.17976 -14.04087 -13.71569 -13.64299 -13.49238 -13.33090 -13.17819 -13.02574 -12.94720 -12.49861 -12.36975 -12.09511 -11.89550 -11.63504 -11.48772 -11.17058 -11.10500 -11.03016 -10.82545 -10.75783 -9.36895 -8.65761 -6.81216 0.82290 1.14433 1.17169 1.19328 1.31446 1.67702 1.88527 2.06521 2.20542 2.66005 2.85460 3.43878 3.61040 3.65437 3.82852 3.89369 3.94718 4.05937 4.15353 4.21516 4.37719 4.48118 4.58031 4.71412 4.82813 4.85786 4.88928 4.94828 4.98173 5.03072 5.08731 5.11913 5.18412 5.33737 5.49460 5.61406 5.69179 5.96539 6.27771 6.31980 6.87939 6.94090 8.48123 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.007258 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.699847 B = 3857.076920 C = 5142.636484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.051 3.949 3 Si 0.930 3.070 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.048 0.952 9 C 0.262 3.738 10 H 0.068 0.932 11 O -0.367 6.367 12 C 0.469 3.531 13 O -0.544 6.544 14 C -0.184 4.184 15 H 0.142 0.858 16 C -0.096 4.096 17 C -0.133 4.133 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.102 4.102 21 C -0.017 4.017 22 C -0.231 4.231 23 C -0.213 4.213 24 C -0.057 4.057 25 O -0.191 6.191 26 H 0.284 0.716 27 H 0.146 0.854 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.412 -1.495 6.329 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.155 4.155 3 Si 0.752 3.248 4 H -0.177 1.177 5 H -0.181 1.181 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.210 3.790 10 H 0.086 0.914 11 O -0.284 6.284 12 C 0.315 3.685 13 O -0.435 6.435 14 C -0.203 4.203 15 H 0.160 0.840 16 C -0.132 4.132 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.160 4.160 20 C -0.139 4.139 21 C -0.068 4.068 22 C -0.251 4.251 23 C -0.232 4.232 24 C -0.124 4.124 25 O -0.088 6.088 26 H 0.093 0.907 27 H 0.164 0.836 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.199 0.801 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 16.291 -1.324 6.321 17.524 hybrid contribution -0.589 0.662 -0.810 1.200 sum 15.702 -0.662 5.512 16.655 Atomic orbital electron populations 1.69931 1.07623 1.29704 1.46045 1.25798 0.95652 1.02408 0.91634 0.85996 0.79030 0.79306 0.80471 1.17662 1.18092 1.19574 1.20801 0.87919 0.94573 1.52727 0.93351 1.19127 0.93101 0.89861 0.76913 0.91415 1.86988 1.35911 1.69692 1.35817 1.23494 0.79286 0.74420 0.91316 1.90514 1.59385 1.42650 1.50992 1.21914 0.94037 1.12790 0.91603 0.83996 1.22952 0.93728 0.91681 1.04860 1.22750 0.93824 0.95029 1.01758 1.22540 0.97174 0.97271 0.95438 1.22765 0.96794 1.02361 0.94073 1.22418 0.97195 0.97576 0.96730 1.23047 1.03089 0.84652 0.96015 1.21754 1.07498 1.00552 0.95278 1.22094 1.07402 0.92102 1.01607 1.24965 1.02286 0.98513 0.86592 1.84034 1.65256 1.18584 1.40925 0.90656 0.83602 0.89053 0.89539 0.88450 0.88375 0.89955 0.92491 0.91793 0.83545 0.80100 0.73761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.71 13.96 21.45 0.30 -53.41 16 2 C 0.05 2.94 5.47 84.65 0.46 3.40 16 3 Si 0.93 44.95 26.90 68.60 1.85 46.79 16 4 H -0.25 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -13.55 6.91 99.48 0.69 -12.86 16 7 C -0.52 -31.51 9.23 25.60 0.24 -31.28 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 C 0.26 14.11 1.96 29.10 0.06 14.17 16 10 H 0.07 3.70 4.56 -2.39 -0.01 3.69 16 11 O -0.37 -18.96 9.84 -48.99 -0.48 -19.44 16 12 C 0.47 21.13 7.64 71.24 0.54 21.67 16 13 O -0.54 -26.20 14.36 21.98 0.32 -25.89 16 14 C -0.18 -6.10 6.30 -11.68 -0.07 -6.17 16 15 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 16 C -0.10 -2.37 10.23 30.44 0.31 -2.06 16 17 C -0.13 -3.52 2.87 -52.38 -0.15 -3.67 16 18 C -0.09 -1.64 8.10 30.98 0.25 -1.39 16 19 C -0.12 -2.22 8.08 31.19 0.25 -1.97 16 20 C -0.10 -2.79 6.48 30.98 0.20 -2.59 16 21 C -0.02 -0.86 6.17 24.83 0.15 -0.71 16 22 C -0.23 -9.95 10.81 22.19 0.24 -9.71 16 23 C -0.21 -7.22 10.91 22.19 0.24 -6.97 16 24 C -0.06 -1.91 12.09 66.97 0.81 -1.10 16 25 O -0.19 -8.64 10.64 0.19 0.00 -8.64 16 26 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 35 H 0.15 5.94 8.06 -2.91 -0.02 5.91 16 36 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.25 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -74.50 321.46 6.57 -67.93 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.05 Total: 21.02 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.54 Total: -28.36 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.30 Total: -53.41 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -0.16 Total: -53.96 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.85 Total: 46.79 kcal Total: -74.50 6.57 -67.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.176 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds