Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48492 * 109.47054 * 270.00090 * 3 2 1 5 5 H 1.48501 * 109.47104 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.46841 * 150.00062 * 3 2 1 7 7 C 1.37877 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46838 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47215 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47187 * 180.02562 * 11 10 9 13 13 C 1.37847 * 120.00148 * 180.02562 * 12 11 10 14 14 N 1.32663 * 121.00538 * 0.02562 * 13 12 11 15 15 C 1.32377 * 121.50098 * 179.97438 * 14 13 12 16 16 N 1.31224 * 123.10830 * 0.02562 * 15 14 13 17 17 C 1.33929 * 120.35086 * 359.97438 * 16 15 14 18 18 C 1.40190 * 122.77977 * 179.97438 * 17 16 15 19 19 N 1.31376 * 119.85798 * 180.02562 * 18 17 16 20 20 C 1.32548 * 122.79050 * 359.97438 * 19 18 17 21 21 F 1.35102 * 119.15078 * 180.02562 * 20 19 18 22 22 C 1.36844 * 121.70052 * 0.02562 * 20 19 18 23 23 C 1.39907 * 118.53093 * 359.97438 * 22 20 19 24 24 H 0.96997 * 120.00215 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47444 * 60.00261 * 9 7 2 26 26 H 1.09002 * 109.46914 * 299.99476 * 9 7 2 27 27 H 1.09000 * 109.46707 * 59.99511 * 10 9 7 28 28 H 1.08999 * 109.47145 * 300.00298 * 10 9 7 29 29 H 1.09003 * 109.46946 * 59.99948 * 11 10 9 30 30 H 1.08994 * 109.47349 * 300.00304 * 11 10 9 31 31 H 0.96999 * 119.99745 * 359.97438 * 12 11 10 32 32 H 1.07999 * 118.44607 * 179.97438 * 15 14 13 33 33 H 1.07998 * 120.07047 * 0.02714 * 18 17 16 34 34 H 1.08003 * 120.72799 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4324 -6.1006 -0.0037 13 6 1.9730 -7.4002 -0.0047 14 7 0.6732 -7.6655 -0.0059 15 6 0.2212 -8.9098 -0.0074 16 7 1.0096 -9.9588 -0.0074 17 6 2.3401 -9.8054 -0.0062 18 6 3.2291 -10.8893 -0.0056 19 7 4.5248 -10.6726 -0.0040 20 6 5.0489 -9.4551 -0.0034 21 9 6.3929 -9.3172 -0.0023 22 6 4.2639 -8.3342 -0.0039 23 6 2.8738 -8.4920 -0.0057 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5574 0.8881 27 1 2.8720 -3.6050 0.8873 28 1 2.8720 -3.6035 -0.8926 29 1 0.8535 -5.0443 -0.8931 30 1 0.8540 -5.0454 0.8868 31 1 3.3861 -5.9233 -0.0039 32 1 -0.8470 -9.0690 -0.0079 33 1 2.8496 -11.9005 -0.0065 34 1 4.7077 -7.3496 -0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = 25.956861 kcal Electronic energy + Delta-G solvation = -19735.715474 eV Core-core repulsion = 16389.940720 eV Total energy + Delta-G solvation = -3345.774754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.24237 -41.79653 -38.83732 -37.20598 -34.40126 -33.00323 -32.86130 -31.23762 -30.01515 -27.06040 -25.45861 -24.91474 -23.28703 -22.42504 -20.69710 -19.66178 -18.71809 -18.28275 -16.84658 -16.50681 -16.46009 -15.92751 -15.53175 -15.18257 -14.74080 -14.64808 -14.49404 -14.45799 -13.93005 -13.61496 -13.16648 -12.46647 -12.42165 -11.96265 -11.45371 -11.18052 -10.96292 -10.88099 -10.66270 -10.46633 -10.44859 -10.02454 -9.65448 -9.50284 -9.32233 -9.23117 -8.46284 -8.01694 -6.10951 -4.14601 -0.14302 0.26639 1.48065 2.65922 2.73287 3.18852 3.25013 3.31955 3.34348 3.76630 3.76770 3.83223 3.96827 4.27523 4.36859 4.55519 4.71954 4.99696 5.11433 5.25202 5.30186 5.42502 5.54989 5.87182 5.92812 6.06014 6.38576 6.38650 6.51554 6.80386 6.85316 7.11463 7.30566 7.51237 7.62027 7.86542 8.06356 8.26897 8.91672 9.50371 11.00191 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003244 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.930927 B = 8628.820241 C = 9669.003679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.125 4.125 11 C 0.119 3.881 12 N -0.677 5.677 13 C 0.479 3.521 14 N -0.582 5.582 15 C 0.359 3.641 16 N -0.549 5.549 17 C 0.130 3.870 18 C 0.181 3.819 19 N -0.483 5.483 20 C 0.264 3.736 21 F -0.113 7.113 22 C -0.132 4.132 23 C -0.157 4.157 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.412 0.588 32 H 0.200 0.800 33 H 0.187 0.813 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -19.257 -0.013 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.163 4.163 11 C -0.003 4.003 12 N -0.305 5.305 13 C 0.220 3.780 14 N -0.310 5.310 15 C 0.069 3.931 16 N -0.270 5.270 17 C 0.000 4.000 18 C 0.008 3.992 19 N -0.197 5.197 20 C 0.121 3.879 21 F -0.092 7.092 22 C -0.156 4.156 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.250 0.750 32 H 0.217 0.783 33 H 0.204 0.796 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.419 -19.780 -0.007 20.268 hybrid contribution 1.399 1.989 -0.012 2.431 sum 5.817 -17.791 -0.018 18.718 Atomic orbital electron populations 1.69954 1.06061 1.26835 1.50300 1.25021 0.94867 0.99347 0.95116 0.86575 0.79816 0.83343 0.78165 1.20602 1.21137 1.19868 1.21174 0.93000 0.90883 1.51332 0.92639 1.19009 0.93708 0.90639 0.97779 1.21959 1.00022 0.93199 1.01108 1.21911 0.91453 0.84023 1.02953 1.45108 1.10714 1.02149 1.72504 1.18627 0.88808 0.85474 0.85047 1.68154 1.12825 1.24736 1.25320 1.24777 1.00688 0.81626 0.86010 1.68770 1.02054 1.34239 1.21945 1.19760 0.92514 0.91755 0.95933 1.22690 0.84579 0.98927 0.93014 1.66718 1.16079 1.24222 1.12647 1.17370 0.78825 0.89282 1.02434 1.91637 1.28158 1.95746 1.93667 1.21291 0.92449 0.99847 1.02019 1.18946 0.94075 0.95492 1.08605 0.92828 0.96159 0.96136 0.92553 0.92551 0.90773 0.90777 0.75037 0.78330 0.79626 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.12 1.77 5.73 -4.04 -0.02 1.75 16 12 N -0.68 -8.30 5.63 -59.99 -0.34 -8.64 16 13 C 0.48 6.11 7.56 -154.99 -1.17 4.94 16 14 N -0.58 -7.71 9.68 -13.54 -0.13 -7.84 16 15 C 0.36 4.02 12.21 -92.14 -1.13 2.89 16 16 N -0.55 -6.36 10.47 -12.63 -0.13 -6.49 16 17 C 0.13 1.51 6.63 -84.87 -0.56 0.94 16 18 C 0.18 1.82 11.27 -17.01 -0.19 1.63 16 19 N -0.48 -5.60 10.30 -13.49 -0.14 -5.74 16 20 C 0.26 3.02 8.33 -17.75 -0.15 2.88 16 21 F -0.11 -1.32 17.27 2.25 0.04 -1.28 16 22 C -0.13 -1.38 9.57 -39.46 -0.38 -1.75 16 23 C -0.16 -1.85 5.76 -106.67 -0.61 -2.46 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.41 4.14 6.86 -40.82 -0.28 3.86 16 32 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.15 1.20 6.73 -52.48 -0.35 0.85 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -30.63 303.99 -8.87 -39.50 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.56 Total: -0.87 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -4.90 Total: -3.93 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.00 Total: -53.88 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.63 -8.87 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.458 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds