Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48492 * 109.47054 * 270.00090 * 3 2 1 5 5 H 1.48501 * 109.47104 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.46841 * 150.00062 * 3 2 1 7 7 C 1.37877 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46838 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47215 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47187 * 180.02562 * 11 10 9 13 13 C 1.37847 * 120.00148 * 180.02562 * 12 11 10 14 14 N 1.32663 * 121.00538 * 0.02562 * 13 12 11 15 15 C 1.32377 * 121.50098 * 179.97438 * 14 13 12 16 16 N 1.31224 * 123.10830 * 0.02562 * 15 14 13 17 17 C 1.33929 * 120.35086 * 359.97438 * 16 15 14 18 18 C 1.40190 * 122.77977 * 179.97438 * 17 16 15 19 19 N 1.31376 * 119.85798 * 180.02562 * 18 17 16 20 20 C 1.32548 * 122.79050 * 359.97438 * 19 18 17 21 21 F 1.35102 * 119.15078 * 180.02562 * 20 19 18 22 22 C 1.36844 * 121.70052 * 0.02562 * 20 19 18 23 23 C 1.39907 * 118.53093 * 359.97438 * 22 20 19 24 24 H 0.96997 * 120.00215 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47444 * 60.00261 * 9 7 2 26 26 H 1.09002 * 109.46914 * 299.99476 * 9 7 2 27 27 H 1.09000 * 109.46707 * 59.99511 * 10 9 7 28 28 H 1.08999 * 109.47145 * 300.00298 * 10 9 7 29 29 H 1.09003 * 109.46946 * 59.99948 * 11 10 9 30 30 H 1.08994 * 109.47349 * 300.00304 * 11 10 9 31 31 H 0.96999 * 119.99745 * 359.97438 * 12 11 10 32 32 H 1.07999 * 118.44607 * 179.97438 * 15 14 13 33 33 H 1.07998 * 120.07047 * 0.02714 * 18 17 16 34 34 H 1.08003 * 120.72799 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4324 -6.1006 -0.0037 13 6 1.9730 -7.4002 -0.0047 14 7 0.6732 -7.6655 -0.0059 15 6 0.2212 -8.9098 -0.0074 16 7 1.0096 -9.9588 -0.0074 17 6 2.3401 -9.8054 -0.0062 18 6 3.2291 -10.8893 -0.0056 19 7 4.5248 -10.6726 -0.0040 20 6 5.0489 -9.4551 -0.0034 21 9 6.3929 -9.3172 -0.0023 22 6 4.2639 -8.3342 -0.0039 23 6 2.8738 -8.4920 -0.0057 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5574 0.8881 27 1 2.8720 -3.6050 0.8873 28 1 2.8720 -3.6035 -0.8926 29 1 0.8535 -5.0443 -0.8931 30 1 0.8540 -5.0454 0.8868 31 1 3.3861 -5.9233 -0.0039 32 1 -0.8470 -9.0690 -0.0079 33 1 2.8496 -11.9005 -0.0065 34 1 4.7077 -7.3496 -0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = 7.664554 kcal Electronic energy + Delta-G solvation = -19736.508688 eV Core-core repulsion = 16389.940720 eV Total energy + Delta-G solvation = -3346.567968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.11765 -42.67997 -39.72577 -38.27064 -35.95189 -34.36945 -33.89453 -32.62857 -31.00543 -28.60999 -26.51714 -25.88284 -24.75039 -23.43168 -22.25055 -20.55641 -19.67822 -19.20558 -18.46176 -17.75671 -17.34220 -16.94459 -16.63148 -16.52570 -16.01470 -15.82103 -15.60822 -15.35301 -14.82268 -14.47887 -14.29452 -14.27315 -13.73683 -13.65761 -12.89559 -12.58965 -12.51702 -12.39969 -12.02626 -11.64670 -11.51030 -11.33388 -11.32586 -11.21036 -10.55269 -10.46854 -10.24528 -8.94769 -8.20215 -6.30918 -0.98639 -0.62262 0.59055 1.41858 1.42145 1.52897 1.74260 1.80309 2.36492 2.41398 2.88318 2.91999 2.97942 3.14131 3.14426 3.43277 3.67157 3.90397 4.09269 4.16692 4.21243 4.34631 4.53946 4.56677 4.91012 4.93927 5.12943 5.14913 5.24993 5.50279 5.55811 5.71183 5.80901 5.84510 6.22735 6.25718 6.43011 6.86647 7.16460 7.38758 8.91491 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003244 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.930927 B = 8628.820241 C = 9669.003679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.108 4.108 11 C 0.138 3.862 12 N -0.672 5.672 13 C 0.472 3.528 14 N -0.604 5.604 15 C 0.353 3.647 16 N -0.548 5.548 17 C 0.116 3.884 18 C 0.190 3.810 19 N -0.498 5.498 20 C 0.253 3.747 21 F -0.117 7.117 22 C -0.126 4.126 23 C -0.163 4.163 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.423 0.577 32 H 0.230 0.770 33 H 0.215 0.785 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -19.885 -0.016 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.146 4.146 11 C 0.015 3.985 12 N -0.302 5.302 13 C 0.214 3.786 14 N -0.333 5.333 15 C 0.064 3.936 16 N -0.270 5.270 17 C -0.013 4.013 18 C 0.017 3.983 19 N -0.212 5.212 20 C 0.111 3.889 21 F -0.096 7.096 22 C -0.149 4.149 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.263 0.737 32 H 0.246 0.754 33 H 0.232 0.768 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.654 -20.441 -0.010 21.208 hybrid contribution 0.985 2.084 -0.011 2.306 sum 6.639 -18.356 -0.021 19.520 Atomic orbital electron populations 1.70088 1.07761 1.27762 1.51635 1.25949 0.95711 1.03299 0.94854 0.85490 0.78734 0.78687 0.78402 1.19931 1.21077 1.18626 1.21687 0.93687 0.92204 1.50472 0.91809 1.18904 0.94329 0.92495 0.95406 1.21652 0.98690 0.92194 1.02053 1.21419 0.91217 0.83725 1.02119 1.44773 1.10790 1.01429 1.73237 1.18710 0.89072 0.85578 0.85227 1.68182 1.13302 1.25932 1.25849 1.25377 1.01984 0.80932 0.85311 1.68819 1.02125 1.34315 1.21696 1.20060 0.92866 0.92225 0.96121 1.23123 0.83841 0.99762 0.91525 1.66759 1.16706 1.24478 1.13260 1.17529 0.78820 0.89674 1.02890 1.91626 1.28428 1.95785 1.93743 1.21428 0.91770 1.00658 1.01075 1.18987 0.94515 0.95241 1.09000 0.92805 0.98575 0.98552 0.91553 0.91530 0.91716 0.91721 0.73692 0.75441 0.76847 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -29.06 9.11 25.60 0.23 -28.82 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.11 -3.73 5.27 30.60 0.16 -3.56 16 11 C 0.14 4.06 5.73 86.38 0.50 4.55 16 12 N -0.67 -15.55 5.63 -343.72 -1.94 -17.49 16 13 C 0.47 11.45 7.56 133.97 1.01 12.46 16 14 N -0.60 -15.38 9.68 -196.76 -1.91 -17.28 16 15 C 0.35 7.39 12.21 180.88 2.21 9.59 16 16 N -0.55 -11.77 10.47 -193.88 -2.03 -13.80 16 17 C 0.12 2.51 6.63 40.17 0.27 2.78 16 18 C 0.19 3.47 11.27 85.24 0.96 4.43 16 19 N -0.50 -10.75 10.30 -196.61 -2.03 -12.78 16 20 C 0.25 5.43 8.33 84.26 0.70 6.13 16 21 F -0.12 -2.57 17.27 44.97 0.78 -1.80 16 22 C -0.13 -2.39 9.57 22.35 0.21 -2.18 16 23 C -0.16 -3.59 5.76 -21.19 -0.12 -3.72 16 24 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.42 7.64 6.86 -92.71 -0.64 7.00 16 32 H 0.23 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.22 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.17 2.35 6.73 -2.91 -0.02 2.33 16 Total: -1.00 -65.56 303.99 2.44 -63.11 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.51 Total: 6.59 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.74 Total: 3.55 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.61 Total: -116.11 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -65.56 2.44 -63.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.777 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds