Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47578 * 2 1 4 4 H 1.09003 * 109.46925 * 304.99954 * 3 2 1 5 5 C 1.50699 * 109.47385 * 185.00385 * 3 2 1 6 6 H 1.08006 * 119.99424 * 239.99884 * 5 3 2 7 7 C 1.37871 * 120.00356 * 59.99649 * 5 3 2 8 8 N 1.31517 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00091 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47175 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47020 * 120.00071 * 9 7 5 12 12 H 1.48496 * 109.46937 * 240.00004 * 9 7 5 13 13 N 1.46493 * 109.47052 * 64.99588 * 3 2 1 14 14 C 1.37846 * 120.00337 * 275.00493 * 13 3 2 15 15 N 1.32655 * 121.00676 * 359.97362 * 14 13 3 16 16 C 1.32375 * 121.50339 * 180.02562 * 15 14 13 17 17 N 1.31228 * 123.10778 * 0.02562 * 16 15 14 18 18 C 1.33935 * 120.34659 * 0.02562 * 17 16 15 19 19 C 1.40190 * 122.77256 * 180.02562 * 18 17 16 20 20 N 1.31369 * 119.85839 * 180.02562 * 19 18 17 21 21 C 1.32547 * 122.78666 * 359.97438 * 20 19 18 22 22 F 1.35102 * 119.14874 * 180.02562 * 21 20 19 23 23 C 1.36842 * 121.70789 * 0.28168 * 21 20 19 24 24 C 1.39918 * 118.52348 * 359.45200 * 23 21 20 25 25 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47197 * 300.00246 * 1 2 3 27 27 H 1.08999 * 109.47429 * 60.00219 * 1 2 3 28 28 H 1.09000 * 109.47197 * 239.99754 * 2 1 3 29 29 H 1.09005 * 109.47116 * 120.00107 * 2 1 3 30 30 H 0.97000 * 120.00094 * 179.97438 * 8 7 5 31 31 H 0.97002 * 119.99783 * 95.00391 * 13 3 2 32 32 H 1.08000 * 118.45239 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.07457 * 0.02562 * 19 18 17 34 34 H 1.08002 * 120.73825 * 179.72930 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0050 0.8798 -1.3812 10 1 6.5988 1.5451 -0.1938 11 1 6.4961 -0.5192 -1.4627 12 1 6.3999 1.6154 -2.6092 13 7 1.6525 2.0974 1.2517 14 6 0.4074 2.6773 1.3695 15 7 -0.4552 2.6543 0.3620 16 6 -1.6530 3.2084 0.4641 17 7 -2.0727 3.8132 1.5505 18 6 -1.2814 3.8953 2.6279 19 6 -1.6778 4.5285 3.8142 20 7 -0.8545 4.5761 4.8368 21 6 0.3593 4.0445 4.8065 22 9 1.1452 4.1357 5.9015 23 6 0.8389 3.4100 3.6929 24 6 0.0117 3.3175 2.5683 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8291 -0.0605 -2.9503 31 1 2.2720 2.1231 1.9977 32 1 -2.3161 3.1613 -0.3871 33 1 -2.6579 4.9763 3.8872 34 1 1.8322 2.9861 3.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 38.520730 kcal Electronic energy + Delta-G solvation = -20985.092842 eV Core-core repulsion = 17639.862899 eV Total energy + Delta-G solvation = -3345.229944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.92366 -41.37017 -38.48700 -36.90195 -34.01414 -32.60281 -32.05440 -30.89136 -29.70447 -27.14244 -25.15283 -24.48667 -23.24260 -22.18101 -20.28826 -19.21979 -18.54229 -17.78255 -16.82020 -16.25289 -16.10845 -15.35132 -15.11686 -14.93466 -14.68607 -14.09910 -14.03091 -13.66219 -13.37955 -13.27543 -12.82993 -12.39507 -11.94574 -11.46636 -11.35351 -11.08093 -10.91235 -10.69794 -10.40631 -10.36848 -10.10685 -10.02054 -9.78279 -9.30712 -8.95377 -8.79564 -8.58037 -7.36861 -6.31930 -4.42837 0.28346 0.69395 1.95273 3.06191 3.12559 3.21161 3.22911 3.45869 3.54173 4.17380 4.20238 4.22905 4.30290 4.40363 4.73117 5.00577 5.04093 5.14787 5.42455 5.51328 5.69302 6.18895 6.23180 6.30032 6.38799 6.52736 6.78647 6.89293 7.05950 7.13474 7.22976 7.44792 7.48252 7.61554 7.72581 7.94915 8.14000 8.52897 8.68427 9.24740 10.73183 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.005397 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.872266 B = 5186.629175 C = 6135.003473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.064 0.936 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.650 5.650 14 C 0.480 3.520 15 N -0.574 5.574 16 C 0.357 3.643 17 N -0.566 5.566 18 C 0.135 3.865 19 C 0.169 3.831 20 N -0.485 5.485 21 C 0.249 3.751 22 F -0.118 7.118 23 C -0.124 4.124 24 C -0.165 4.165 25 H 0.024 0.976 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.031 0.969 30 H 0.267 0.733 31 H 0.403 0.597 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 3.915 7.099 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.515 5.515 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.272 5.272 14 C 0.221 3.779 15 N -0.303 5.303 16 C 0.067 3.933 17 N -0.289 5.289 18 C 0.006 3.994 19 C -0.004 4.004 20 N -0.198 5.198 21 C 0.106 3.894 22 F -0.097 7.097 23 C -0.148 4.148 24 C -0.180 4.180 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.240 0.760 32 H 0.210 0.790 33 H 0.199 0.801 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.332 4.058 6.842 10.818 hybrid contribution 2.266 -0.455 0.330 2.335 sum -5.065 3.603 7.172 9.491 Atomic orbital electron populations 1.21843 0.98151 0.98228 1.00983 1.21957 0.92822 0.99180 1.02680 1.19151 0.94736 0.89541 0.79832 0.91842 1.21195 0.90245 1.39950 1.06785 0.91956 1.24839 0.98867 0.94407 0.95169 1.69877 1.35274 1.37069 1.09252 0.86366 0.84395 0.77956 0.78281 1.19708 1.20693 1.20701 1.45788 1.09960 1.52164 1.19277 1.18728 0.87488 0.84804 0.86908 1.68376 1.04918 1.26969 1.30023 1.24708 0.89451 0.84876 0.94302 1.68745 1.35196 1.24479 1.00508 1.19709 0.89481 0.94967 0.95286 1.22567 0.98149 0.94753 0.84887 1.66647 1.03307 1.18044 1.31843 1.17308 0.87930 1.00409 0.83782 1.91603 1.71257 1.94511 1.52370 1.21308 1.01364 1.00292 0.91856 1.19024 0.97451 1.05768 0.95806 0.95671 0.95139 0.92263 0.87734 0.95005 0.92334 0.76031 0.79022 0.80079 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.46 37.15 0.31 -2.29 16 2 C -0.13 -2.77 5.45 -26.74 -0.15 -2.92 16 3 C 0.27 5.96 2.25 -69.09 -0.16 5.80 16 4 H 0.06 1.60 7.58 -51.93 -0.39 1.21 16 5 C -0.54 -13.16 8.73 -34.44 -0.30 -13.46 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -22.72 11.29 55.43 0.63 -22.09 16 9 Si 0.90 19.46 29.54 -169.99 -5.02 14.44 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.65 -11.99 5.08 -54.64 -0.28 -12.27 16 14 C 0.48 8.43 6.09 -154.99 -0.94 7.48 16 15 N -0.57 -10.12 6.62 -13.54 -0.09 -10.21 16 16 C 0.36 5.37 12.21 -92.14 -1.13 4.25 16 17 N -0.57 -8.54 10.47 -12.63 -0.13 -8.67 16 18 C 0.14 2.06 6.63 -84.87 -0.56 1.49 16 19 C 0.17 2.25 11.27 -17.02 -0.19 2.06 16 20 N -0.48 -7.08 10.30 -13.50 -0.14 -7.22 16 21 C 0.25 3.66 8.33 -17.75 -0.15 3.51 16 22 F -0.12 -1.71 17.27 2.25 0.04 -1.67 16 23 C -0.12 -1.78 9.57 -39.46 -0.38 -2.15 16 24 C -0.17 -2.62 5.76 -106.66 -0.61 -3.23 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.57 5.59 -51.93 -0.29 0.28 16 27 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 28 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.40 6.63 6.92 -40.82 -0.28 6.35 16 32 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.15 1.81 6.73 -52.49 -0.35 1.46 16 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -26.56 290.86 -8.22 -34.77 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.26 Total: 6.32 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -4.35 Total: 2.22 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.01 Total: -60.46 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.56 -8.22 -34.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.294 kcal (2) G-P(sol) polarization free energy of solvation -26.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds