Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47578 * 2 1 4 4 H 1.09003 * 109.46925 * 304.99954 * 3 2 1 5 5 C 1.50699 * 109.47385 * 185.00385 * 3 2 1 6 6 H 1.08006 * 119.99424 * 239.99884 * 5 3 2 7 7 C 1.37871 * 120.00356 * 59.99649 * 5 3 2 8 8 N 1.31517 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00091 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47175 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47020 * 120.00071 * 9 7 5 12 12 H 1.48496 * 109.46937 * 240.00004 * 9 7 5 13 13 N 1.46493 * 109.47052 * 64.99588 * 3 2 1 14 14 C 1.37846 * 120.00337 * 275.00493 * 13 3 2 15 15 N 1.32655 * 121.00676 * 359.97362 * 14 13 3 16 16 C 1.32375 * 121.50339 * 180.02562 * 15 14 13 17 17 N 1.31228 * 123.10778 * 0.02562 * 16 15 14 18 18 C 1.33935 * 120.34659 * 0.02562 * 17 16 15 19 19 C 1.40190 * 122.77256 * 180.02562 * 18 17 16 20 20 N 1.31369 * 119.85839 * 180.02562 * 19 18 17 21 21 C 1.32547 * 122.78666 * 359.97438 * 20 19 18 22 22 F 1.35102 * 119.14874 * 180.02562 * 21 20 19 23 23 C 1.36842 * 121.70789 * 0.28168 * 21 20 19 24 24 C 1.39918 * 118.52348 * 359.45200 * 23 21 20 25 25 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47197 * 300.00246 * 1 2 3 27 27 H 1.08999 * 109.47429 * 60.00219 * 1 2 3 28 28 H 1.09000 * 109.47197 * 239.99754 * 2 1 3 29 29 H 1.09005 * 109.47116 * 120.00107 * 2 1 3 30 30 H 0.97000 * 120.00094 * 179.97438 * 8 7 5 31 31 H 0.97002 * 119.99783 * 95.00391 * 13 3 2 32 32 H 1.08000 * 118.45239 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.07457 * 0.02562 * 19 18 17 34 34 H 1.08002 * 120.73825 * 179.72930 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0050 0.8798 -1.3812 10 1 6.5988 1.5451 -0.1938 11 1 6.4961 -0.5192 -1.4627 12 1 6.3999 1.6154 -2.6092 13 7 1.6525 2.0974 1.2517 14 6 0.4074 2.6773 1.3695 15 7 -0.4552 2.6543 0.3620 16 6 -1.6530 3.2084 0.4641 17 7 -2.0727 3.8132 1.5505 18 6 -1.2814 3.8953 2.6279 19 6 -1.6778 4.5285 3.8142 20 7 -0.8545 4.5761 4.8368 21 6 0.3593 4.0445 4.8065 22 9 1.1452 4.1357 5.9015 23 6 0.8389 3.4100 3.6929 24 6 0.0117 3.3175 2.5683 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8291 -0.0605 -2.9503 31 1 2.2720 2.1231 1.9977 32 1 -2.3161 3.1613 -0.3871 33 1 -2.6579 4.9763 3.8872 34 1 1.8322 2.9861 3.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 24.337010 kcal Electronic energy + Delta-G solvation = -20985.707895 eV Core-core repulsion = 17639.862899 eV Total energy + Delta-G solvation = -3345.844996 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.07006 -42.58721 -39.72037 -38.34470 -35.55863 -33.88297 -33.63336 -32.35824 -30.95087 -28.82885 -26.42233 -25.71364 -24.90108 -23.46170 -21.89392 -20.45787 -19.87338 -19.02458 -18.41398 -17.58096 -17.27120 -16.92579 -16.53899 -16.29078 -15.85852 -15.57916 -15.25806 -14.86761 -14.77346 -14.57027 -14.35825 -13.73876 -13.53324 -13.18832 -12.92053 -12.80039 -12.51945 -12.14629 -12.01153 -11.88196 -11.55167 -11.26406 -11.19381 -11.03129 -10.57295 -10.22036 -10.01648 -8.69952 -8.19594 -6.35819 -0.87345 -0.50835 0.72304 1.41925 1.45391 1.54450 1.90260 2.07236 2.41984 2.42853 3.00886 3.04008 3.11271 3.14161 3.24138 3.57583 3.82487 3.98584 4.26105 4.43370 4.54784 4.58486 4.62498 4.76389 5.05456 5.17479 5.25493 5.34984 5.43844 5.57055 5.66764 5.72345 5.84539 6.09635 6.24118 6.39577 6.60412 6.80240 7.31764 7.38766 8.85102 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.005397 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.872266 B = 5186.629175 C = 6135.003473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.283 3.717 4 H 0.029 0.971 5 C -0.554 4.554 6 H 0.066 0.934 7 C 0.026 3.974 8 N -0.906 5.906 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.657 5.657 14 C 0.471 3.529 15 N -0.596 5.596 16 C 0.350 3.650 17 N -0.556 5.556 18 C 0.121 3.879 19 C 0.186 3.814 20 N -0.495 5.495 21 C 0.247 3.753 22 F -0.118 7.118 23 C -0.125 4.125 24 C -0.172 4.172 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.411 0.589 32 H 0.224 0.776 33 H 0.216 0.784 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 4.576 8.218 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.161 4.161 3 C 0.180 3.820 4 H 0.047 0.953 5 C -0.593 4.593 6 H 0.084 0.916 7 C -0.175 4.175 8 N -0.544 5.544 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.282 5.282 14 C 0.213 3.787 15 N -0.325 5.325 16 C 0.060 3.940 17 N -0.279 5.279 18 C -0.009 4.009 19 C 0.013 3.987 20 N -0.209 5.209 21 C 0.105 3.895 22 F -0.097 7.097 23 C -0.149 4.149 24 C -0.187 4.187 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.240 0.760 33 H 0.232 0.768 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.974 4.746 7.999 12.252 hybrid contribution 2.333 -0.575 0.038 2.403 sum -5.642 4.172 8.037 10.669 Atomic orbital electron populations 1.21664 0.96270 0.98948 1.00727 1.21801 0.94423 0.98698 1.01135 1.18643 0.93493 0.89452 0.80408 0.95333 1.21551 0.91580 1.39378 1.06755 0.91589 1.25569 1.02578 0.94314 0.95076 1.70000 1.36704 1.37955 1.09713 0.85453 0.79954 0.77775 0.78097 1.19037 1.20567 1.20937 1.45369 1.10936 1.53511 1.18416 1.18829 0.87118 0.85035 0.87701 1.68378 1.05886 1.27621 1.30620 1.25314 0.89047 0.84353 0.95240 1.68800 1.34923 1.23718 1.00420 1.20050 0.89380 0.95370 0.96053 1.23088 0.98892 0.93154 0.83536 1.66738 1.03450 1.18438 1.32284 1.17420 0.88073 1.00233 0.83810 1.91604 1.71302 1.94472 1.52330 1.21386 1.01946 1.00299 0.91241 1.19048 0.98115 1.05937 0.95563 0.94381 0.94718 0.93052 0.90571 0.95064 0.92449 0.75075 0.75998 0.76755 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.46 71.98 0.61 -3.95 16 2 C -0.12 -5.35 5.45 30.59 0.17 -5.18 16 3 C 0.28 12.75 2.25 44.25 0.10 12.85 16 4 H 0.03 1.49 7.58 -2.39 -0.02 1.47 16 5 C -0.55 -27.06 8.73 25.60 0.22 -26.83 16 6 H 0.07 3.09 7.74 -2.91 -0.02 3.07 16 7 C 0.03 1.30 5.29 84.65 0.45 1.75 16 8 N -0.91 -47.84 11.29 21.45 0.24 -47.59 16 9 Si 0.96 39.99 29.54 68.60 2.03 42.01 16 10 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 13 N -0.66 -24.22 5.08 -326.78 -1.66 -25.88 16 14 C 0.47 16.27 6.09 133.98 0.82 17.09 16 15 N -0.60 -20.65 6.62 -196.76 -1.30 -21.96 16 16 C 0.35 9.96 12.21 180.88 2.21 12.17 16 17 N -0.56 -15.52 10.47 -193.88 -2.03 -17.55 16 18 C 0.12 3.42 6.63 40.17 0.27 3.69 16 19 C 0.19 4.41 11.27 85.24 0.96 5.37 16 20 N -0.50 -13.26 10.30 -196.61 -2.03 -15.29 16 21 C 0.25 6.79 8.33 84.26 0.70 7.49 16 22 F -0.12 -3.22 17.27 44.97 0.78 -2.44 16 23 C -0.13 -3.38 9.57 22.35 0.21 -3.17 16 24 C -0.17 -5.21 5.76 -21.19 -0.12 -5.33 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.03 1.28 5.59 -2.39 -0.01 1.27 16 27 H 0.05 2.03 7.70 -2.39 -0.02 2.01 16 28 H 0.08 3.82 5.95 -2.39 -0.01 3.80 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 31 H 0.41 13.39 6.92 -92.71 -0.64 12.74 16 32 H 0.22 4.65 8.06 -2.91 -0.02 4.63 16 33 H 0.22 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.16 3.78 6.73 -2.91 -0.02 3.76 16 Total: -1.00 -56.27 290.86 3.14 -53.13 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.52 Total: 19.62 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.59 Total: 15.95 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.78 Total: -128.27 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -56.27 3.14 -53.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.468 kcal (2) G-P(sol) polarization free energy of solvation -56.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds