Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46980 * 90.00096 * 3 2 1 5 5 H 1.48496 * 109.46980 * 210.00061 * 3 2 1 6 6 H 1.48500 * 109.47266 * 330.00169 * 3 2 1 7 7 C 1.39914 * 119.99926 * 179.72506 * 2 1 3 8 8 H 1.08003 * 119.99666 * 329.66284 * 7 2 1 9 9 C 1.40997 * 119.99877 * 149.65655 * 7 2 1 10 10 C 1.40998 * 120.32064 * 324.99532 * 9 7 2 11 11 F 1.35100 * 120.11710 * 0.02964 * 10 9 7 12 12 C 1.37734 * 119.76405 * 179.78975 * 10 9 7 13 13 C 1.38788 * 120.42758 * 0.49046 * 12 10 9 14 14 C 1.38227 * 120.66416 * 359.74370 * 13 12 10 15 15 C 1.38625 * 120.21549 * 0.02562 * 14 13 12 16 16 N 1.38813 * 120.21756 * 179.97438 * 15 14 13 17 17 C 1.46497 * 119.99686 * 359.97438 * 16 15 14 18 18 C 1.53004 * 109.46919 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46919 * 179.97438 * 18 17 16 20 20 C 1.35312 * 125.87120 * 124.72167 * 19 18 17 21 21 C 1.35346 * 106.17822 * 179.90171 * 20 19 18 22 22 N 1.33774 * 106.49783 * 0.35104 * 21 20 19 23 23 N 1.28631 * 108.88399 * 359.77126 * 22 21 20 24 24 H 0.96996 * 120.00295 * 174.86729 * 1 2 3 25 25 H 1.07999 * 119.78755 * 180.23404 * 12 10 9 26 26 H 1.08003 * 119.66889 * 179.71715 * 13 12 10 27 27 H 1.07994 * 119.89290 * 179.97438 * 14 13 12 28 28 H 0.96999 * 119.99921 * 179.97438 * 16 15 14 29 29 H 1.08998 * 109.47480 * 299.99711 * 17 16 15 30 30 H 1.09000 * 109.47325 * 59.99423 * 17 16 15 31 31 H 1.08993 * 109.47264 * 299.99920 * 18 17 16 32 32 H 1.08995 * 109.47155 * 60.00338 * 18 17 16 33 33 H 1.08004 * 126.90838 * 0.02562 * 20 19 18 34 34 H 1.08009 * 126.75198 * 180.11878 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 1.4001 5 1 3.5406 1.4401 -0.7000 6 1 1.4405 2.6527 -0.7000 7 6 2.0086 -1.2117 0.0058 8 1 1.5795 -2.0807 0.4824 9 6 3.2737 -1.2983 -0.6106 10 6 3.5478 -0.5596 -1.7800 11 9 2.5979 0.2371 -2.3167 12 6 4.7890 -0.6495 -2.3703 13 6 5.7679 -1.4699 -1.8273 14 6 5.5168 -2.2055 -0.6843 15 6 4.2786 -2.1319 -0.0652 16 7 4.0262 -2.8711 1.0823 17 6 5.0698 -3.7329 1.6427 18 6 4.5372 -4.4294 2.8966 19 7 5.5807 -5.2918 3.4567 20 6 6.0523 -5.2449 4.7241 21 6 6.9972 -6.2101 4.8108 22 7 7.0621 -6.7874 3.6058 23 7 6.2103 -6.2207 2.8261 24 1 -0.4850 -0.8366 -0.0751 25 1 5.0006 -0.0809 -3.2638 26 1 6.7354 -1.5346 -2.3028 27 1 6.2874 -2.8403 -0.2726 28 1 3.1588 -2.8169 1.5131 29 1 5.3574 -4.4820 0.9050 30 1 5.9384 -3.1286 1.9044 31 1 4.2499 -3.6801 3.6342 32 1 3.6686 -5.0337 2.6353 33 1 5.7367 -4.5737 5.5092 34 1 7.5859 -6.4619 5.6806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161931942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = 82.306930 kcal Electronic energy + Delta-G solvation = -20468.052783 eV Core-core repulsion = 17124.721552 eV Total energy + Delta-G solvation = -3343.331232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.59112 -43.36359 -38.30584 -36.03842 -33.86416 -33.72637 -31.18078 -30.53683 -29.49151 -27.36599 -24.83039 -24.09990 -22.78267 -21.66918 -20.61429 -20.42833 -18.44052 -17.84899 -16.78021 -16.40177 -15.76182 -15.24959 -15.05111 -14.86514 -14.68678 -14.35451 -14.10180 -13.60116 -13.47190 -12.99532 -12.57734 -12.36024 -12.27995 -11.74643 -11.70780 -11.27930 -11.06619 -10.78559 -10.66253 -10.45866 -10.26502 -9.96566 -9.54664 -9.47686 -9.25212 -8.92015 -7.63485 -7.27516 -6.72738 -4.42894 1.45429 2.10784 2.45220 2.47460 2.62918 3.32598 3.36207 3.54896 4.04867 4.12756 4.19515 4.46967 4.49431 4.57860 4.86327 4.92449 5.05666 5.14632 5.44504 5.65516 5.74156 5.82551 5.91321 6.01057 6.16544 6.24014 6.38523 6.70231 6.99277 7.10327 7.27812 7.54376 7.59472 7.81788 8.00177 8.24917 8.37311 8.37802 8.59698 8.72725 9.98267 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.004484 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.789987 B = 6243.147814 C = 6930.137980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.059 3.941 3 Si 1.069 2.931 4 H -0.297 1.297 5 H -0.262 1.262 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.031 3.969 10 C 0.003 3.997 11 F -0.149 7.149 12 C -0.154 4.154 13 C -0.172 4.172 14 C -0.177 4.177 15 C 0.141 3.859 16 N -0.742 5.742 17 C 0.127 3.873 18 C 0.104 3.896 19 N -0.284 5.284 20 C -0.049 4.049 21 C -0.056 4.056 22 N -0.275 5.275 23 N -0.080 5.080 24 H 0.286 0.714 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.400 0.600 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.191 0.809 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.787 -5.214 8.850 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.162 4.162 3 Si 0.895 3.105 4 H -0.226 1.226 5 H -0.187 1.187 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.095 0.905 9 C 0.025 3.975 10 C -0.018 4.018 11 F -0.129 7.129 12 C -0.175 4.175 13 C -0.192 4.192 14 C -0.200 4.200 15 C 0.041 3.959 16 N -0.378 5.378 17 C 0.000 4.000 18 C -0.017 4.017 19 N -0.078 5.078 20 C -0.200 4.200 21 C -0.213 4.213 22 N -0.141 5.141 23 N -0.060 5.060 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.236 0.764 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.208 0.792 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.730 -4.421 7.576 11.691 hybrid contribution -0.659 -0.932 1.140 1.613 sum 7.071 -5.353 8.716 12.434 Atomic orbital electron populations 1.70589 1.08636 1.32625 1.30679 1.27157 0.95252 1.04307 0.89518 0.83630 0.77459 0.73351 0.76077 1.22591 1.18682 1.20543 1.19958 1.01545 0.99005 1.36626 0.90466 1.17229 0.93416 0.94648 0.92163 1.17313 0.87095 1.01750 0.95637 1.91064 1.64336 1.71987 1.85467 1.20437 0.93076 1.02783 1.01160 1.19970 0.98243 1.02136 0.98837 1.20170 0.95684 1.05001 0.99147 1.17500 0.92855 0.97548 0.88011 1.43670 1.15099 1.49695 1.29376 1.21184 0.92086 0.93872 0.92851 1.22290 0.88075 0.93149 0.98232 1.47389 1.27305 1.24362 1.08766 1.23746 1.01528 1.05300 0.89396 1.23625 1.01795 0.97632 0.98248 1.75136 1.15080 1.22345 1.01555 1.78367 1.05459 1.01000 1.21170 0.90302 0.87922 0.88049 0.88401 0.76353 0.91299 0.92437 0.86894 0.87584 0.79227 0.79390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.34 13.66 55.55 0.76 -20.58 16 2 C 0.06 1.54 4.68 -17.32 -0.08 1.46 16 3 Si 1.07 24.93 25.88 -169.99 -4.40 20.53 16 4 H -0.30 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.26 -6.16 5.36 56.52 0.30 -5.86 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.54 -13.73 8.48 -37.91 -0.32 -14.06 16 8 H 0.08 1.94 7.21 -52.48 -0.38 1.56 16 9 C 0.03 0.76 4.88 -106.57 -0.52 0.24 16 10 C 0.00 0.08 5.07 -38.72 -0.20 -0.12 16 11 F -0.15 -3.81 12.88 2.25 0.03 -3.78 16 12 C -0.15 -3.37 9.99 -39.56 -0.40 -3.77 16 13 C -0.17 -3.47 10.03 -39.38 -0.40 -3.86 16 14 C -0.18 -3.55 9.29 -39.44 -0.37 -3.92 16 15 C 0.14 2.99 6.68 -83.32 -0.56 2.44 16 16 N -0.74 -12.83 5.63 -58.23 -0.33 -13.16 16 17 C 0.13 1.73 5.03 -4.04 -0.02 1.71 16 18 C 0.10 1.07 6.57 -4.04 -0.03 1.04 16 19 N -0.28 -3.27 3.44 -61.27 -0.21 -3.48 16 20 C -0.05 -0.44 11.57 -17.05 -0.20 -0.64 16 21 C -0.06 -0.57 12.05 -17.74 -0.21 -0.78 16 22 N -0.28 -3.91 12.41 30.24 0.38 -3.53 16 23 N -0.08 -1.16 12.91 60.35 0.78 -0.38 16 24 H 0.29 7.36 8.73 -40.82 -0.36 7.00 16 25 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 26 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 27 H 0.10 1.75 6.70 -52.49 -0.35 1.40 16 28 H 0.40 6.77 6.87 -40.82 -0.28 6.49 16 29 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 30 H 0.06 0.81 7.94 -51.93 -0.41 0.39 16 31 H 0.11 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.19 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.19 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -30.09 294.51 -5.46 -35.56 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.62 Total: 4.64 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.29 Total: -20.25 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 1.37 Total: -41.14 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.03 Total: -3.78 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.40 Total: 20.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.09 -5.46 -35.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161931942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.862 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds