Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46980 * 90.00096 * 3 2 1 5 5 H 1.48496 * 109.46980 * 210.00061 * 3 2 1 6 6 H 1.48500 * 109.47266 * 330.00169 * 3 2 1 7 7 C 1.39914 * 119.99926 * 179.72506 * 2 1 3 8 8 H 1.08003 * 119.99666 * 329.66284 * 7 2 1 9 9 C 1.40997 * 119.99877 * 149.65655 * 7 2 1 10 10 C 1.40998 * 120.32064 * 324.99532 * 9 7 2 11 11 F 1.35100 * 120.11710 * 0.02964 * 10 9 7 12 12 C 1.37734 * 119.76405 * 179.78975 * 10 9 7 13 13 C 1.38788 * 120.42758 * 0.49046 * 12 10 9 14 14 C 1.38227 * 120.66416 * 359.74370 * 13 12 10 15 15 C 1.38625 * 120.21549 * 0.02562 * 14 13 12 16 16 N 1.38813 * 120.21756 * 179.97438 * 15 14 13 17 17 C 1.46497 * 119.99686 * 359.97438 * 16 15 14 18 18 C 1.53004 * 109.46919 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46919 * 179.97438 * 18 17 16 20 20 C 1.35312 * 125.87120 * 124.72167 * 19 18 17 21 21 C 1.35346 * 106.17822 * 179.90171 * 20 19 18 22 22 N 1.33774 * 106.49783 * 0.35104 * 21 20 19 23 23 N 1.28631 * 108.88399 * 359.77126 * 22 21 20 24 24 H 0.96996 * 120.00295 * 174.86729 * 1 2 3 25 25 H 1.07999 * 119.78755 * 180.23404 * 12 10 9 26 26 H 1.08003 * 119.66889 * 179.71715 * 13 12 10 27 27 H 1.07994 * 119.89290 * 179.97438 * 14 13 12 28 28 H 0.96999 * 119.99921 * 179.97438 * 16 15 14 29 29 H 1.08998 * 109.47480 * 299.99711 * 17 16 15 30 30 H 1.09000 * 109.47325 * 59.99423 * 17 16 15 31 31 H 1.08993 * 109.47264 * 299.99920 * 18 17 16 32 32 H 1.08995 * 109.47155 * 60.00338 * 18 17 16 33 33 H 1.08004 * 126.90838 * 0.02562 * 20 19 18 34 34 H 1.08009 * 126.75198 * 180.11878 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 1.4001 5 1 3.5406 1.4401 -0.7000 6 1 1.4405 2.6527 -0.7000 7 6 2.0086 -1.2117 0.0058 8 1 1.5795 -2.0807 0.4824 9 6 3.2737 -1.2983 -0.6106 10 6 3.5478 -0.5596 -1.7800 11 9 2.5979 0.2371 -2.3167 12 6 4.7890 -0.6495 -2.3703 13 6 5.7679 -1.4699 -1.8273 14 6 5.5168 -2.2055 -0.6843 15 6 4.2786 -2.1319 -0.0652 16 7 4.0262 -2.8711 1.0823 17 6 5.0698 -3.7329 1.6427 18 6 4.5372 -4.4294 2.8966 19 7 5.5807 -5.2918 3.4567 20 6 6.0523 -5.2449 4.7241 21 6 6.9972 -6.2101 4.8108 22 7 7.0621 -6.7874 3.6058 23 7 6.2103 -6.2207 2.8261 24 1 -0.4850 -0.8366 -0.0751 25 1 5.0006 -0.0809 -3.2638 26 1 6.7354 -1.5346 -2.3028 27 1 6.2874 -2.8403 -0.2726 28 1 3.1588 -2.8169 1.5131 29 1 5.3574 -4.4820 0.9050 30 1 5.9384 -3.1286 1.9044 31 1 4.2499 -3.6801 3.6342 32 1 3.6686 -5.0337 2.6353 33 1 5.7367 -4.5737 5.5092 34 1 7.5859 -6.4619 5.6806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161931942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = 62.199259 kcal Electronic energy + Delta-G solvation = -20468.924717 eV Core-core repulsion = 17124.721552 eV Total energy + Delta-G solvation = -3344.203166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.49958 -44.19729 -39.90649 -37.22258 -35.59753 -35.05426 -32.17762 -31.95731 -30.89575 -28.78462 -26.56414 -25.27901 -23.59077 -22.87979 -22.13142 -21.93979 -20.30170 -18.89645 -17.96190 -17.75699 -17.17684 -16.85669 -16.37962 -16.18212 -15.81998 -15.63844 -15.53208 -15.33272 -14.81079 -14.72961 -14.05970 -13.71862 -13.44887 -13.37630 -12.88975 -12.66673 -12.48301 -12.35201 -12.13640 -11.88723 -11.80792 -11.29960 -11.15593 -10.88615 -10.69932 -10.33612 -9.47898 -9.16262 -8.32907 -6.30742 0.65054 0.70102 0.91570 1.29097 1.45006 1.53380 1.64171 1.70650 2.28405 2.63285 2.78889 3.34639 3.39602 3.63647 3.75803 4.00216 4.10505 4.24992 4.33086 4.33529 4.52514 4.53194 4.62886 4.65034 4.87637 5.00548 5.27634 5.31589 5.46386 5.50735 5.62039 5.66713 5.89603 6.04252 6.28458 6.45629 6.70014 6.94070 7.01059 7.52074 8.06111 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.004484 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.789987 B = 6243.147814 C = 6930.137980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 1.093 2.907 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.284 1.284 7 C -0.561 4.561 8 H 0.065 0.935 9 C -0.001 4.001 10 C -0.018 4.018 11 F -0.162 7.162 12 C -0.174 4.174 13 C -0.146 4.146 14 C -0.186 4.186 15 C 0.150 3.850 16 N -0.737 5.737 17 C 0.130 3.870 18 C 0.111 3.889 19 N -0.287 5.287 20 C -0.031 4.031 21 C -0.064 4.064 22 N -0.312 5.312 23 N -0.128 5.128 24 H 0.279 0.721 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.402 0.598 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -5.381 10.320 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.185 4.185 3 Si 0.916 3.084 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.209 1.209 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.007 4.007 10 C -0.039 4.039 11 F -0.142 7.142 12 C -0.195 4.195 13 C -0.166 4.166 14 C -0.210 4.210 15 C 0.048 3.952 16 N -0.371 5.371 17 C 0.004 3.996 18 C -0.011 4.011 19 N -0.081 5.081 20 C -0.183 4.183 21 C -0.222 4.222 22 N -0.177 5.177 23 N -0.107 5.107 24 H 0.090 0.910 25 H 0.141 0.859 26 H 0.157 0.843 27 H 0.142 0.858 28 H 0.238 0.762 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.164 0.836 32 H 0.128 0.872 33 H 0.252 0.748 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.071 -4.622 9.063 14.315 hybrid contribution -1.128 -1.020 0.689 1.670 sum 8.942 -5.642 9.752 14.384 Atomic orbital electron populations 1.70645 1.09159 1.32145 1.34240 1.27821 0.95361 1.06170 0.89130 0.83330 0.76524 0.71690 0.76852 1.20685 1.19081 1.20937 1.19870 1.02498 0.98624 1.38070 0.91687 1.17426 0.93996 0.96500 0.92753 1.17815 0.87941 1.01911 0.96248 1.91029 1.65048 1.72422 1.85680 1.20733 0.92510 1.04007 1.02230 1.20506 0.99030 0.99303 0.97713 1.20527 0.95800 1.05389 0.99268 1.17733 0.92604 0.96153 0.88706 1.43786 1.16060 1.49048 1.28182 1.21213 0.91247 0.93063 0.94028 1.22280 0.87612 0.93561 0.97610 1.47490 1.27178 1.23838 1.09606 1.24503 0.99892 1.04811 0.89063 1.24295 1.02380 0.97495 0.98003 1.75075 1.15773 1.23571 1.03327 1.78335 1.07089 1.02878 1.22413 0.91048 0.85915 0.84329 0.85777 0.76213 0.92571 0.92051 0.83649 0.87165 0.74826 0.76256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.05 13.66 21.83 0.30 -45.75 16 2 C 0.03 1.66 4.68 85.24 0.40 2.06 16 3 Si 1.09 50.75 25.88 68.60 1.78 52.52 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -12.38 5.36 99.48 0.53 -11.85 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.56 -28.97 8.48 23.35 0.20 -28.77 16 8 H 0.07 3.39 7.21 -2.91 -0.02 3.37 16 9 C 0.00 -0.05 4.88 -21.12 -0.10 -0.15 16 10 C -0.02 -0.88 5.07 22.83 0.12 -0.77 16 11 F -0.16 -8.38 12.88 44.97 0.58 -7.80 16 12 C -0.17 -7.25 9.99 22.28 0.22 -7.03 16 13 C -0.15 -5.36 10.03 22.40 0.22 -5.13 16 14 C -0.19 -6.91 9.29 22.36 0.21 -6.70 16 15 C 0.15 6.16 6.68 38.93 0.26 6.42 16 16 N -0.74 -24.23 5.63 -338.13 -1.90 -26.13 16 17 C 0.13 3.26 5.03 86.38 0.43 3.69 16 18 C 0.11 1.95 6.57 86.38 0.57 2.52 16 19 N -0.29 -5.87 3.44 -347.75 -1.20 -7.07 16 20 C -0.03 -0.45 11.57 83.49 0.97 0.52 16 21 C -0.06 -1.13 12.05 83.73 1.01 -0.12 16 22 N -0.31 -8.50 12.41 -58.25 -0.72 -9.22 16 23 N -0.13 -3.58 12.91 37.02 0.48 -3.10 16 24 H 0.28 15.06 8.73 -92.71 -0.81 14.25 16 25 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 26 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.12 3.96 6.70 -2.91 -0.02 3.94 16 28 H 0.40 13.16 6.87 -92.71 -0.64 12.53 16 29 H 0.06 1.58 7.92 -2.39 -0.02 1.57 16 30 H 0.06 1.53 7.94 -2.39 -0.02 1.51 16 31 H 0.15 1.65 8.07 -2.39 -0.02 1.63 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.24 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -67.41 294.51 4.10 -63.31 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.29 Total: 16.70 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 4.50 Total: -33.47 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -3.05 Total: -91.27 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.58 Total: -7.80 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 1.78 Total: 52.52 kcal Total: -67.41 4.10 -63.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161931942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.511 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds