Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99724 * 2 1 4 4 H 1.48504 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47141 * 300.00011 * 3 2 1 6 6 H 1.48501 * 109.47260 * 59.99721 * 3 2 1 7 7 C 1.37872 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47008 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47067 * 180.02562 * 11 10 9 13 13 C 1.38564 * 120.00077 * 180.02562 * 12 11 10 14 14 N 1.31847 * 120.09155 * 0.02562 * 13 12 11 15 15 C 1.32632 * 122.63791 * 179.97438 * 14 13 12 16 16 C 1.36251 * 121.94549 * 0.02562 * 15 14 13 17 17 F 1.35101 * 120.54408 * 180.02562 * 16 15 14 18 18 C 1.40956 * 118.91365 * 359.97438 * 16 15 14 19 19 N 1.33464 * 122.00235 * 179.72214 * 18 16 15 20 20 C 1.31502 * 119.49652 * 179.76295 * 19 18 16 21 21 C 1.39626 * 120.69378 * 0.54204 * 20 19 18 22 22 N 1.31450 * 120.78592 * 359.70671 * 21 20 19 23 23 C 1.33323 * 119.59971 * 0.02562 * 22 21 20 24 24 H 0.96995 * 120.00291 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46824 * 60.00534 * 9 7 2 26 26 H 1.08994 * 109.47302 * 300.00016 * 9 7 2 27 27 H 1.08997 * 109.46932 * 60.00265 * 10 9 7 28 28 H 1.08999 * 109.47448 * 300.00424 * 10 9 7 29 29 H 1.08997 * 109.47384 * 60.00142 * 11 10 9 30 30 H 1.09007 * 109.46888 * 299.99993 * 11 10 9 31 31 H 0.96998 * 119.99972 * 359.97438 * 12 11 10 32 32 H 1.07989 * 119.02491 * 180.02562 * 15 14 13 33 33 H 1.07996 * 119.65818 * 180.27132 * 20 19 18 34 34 H 1.07993 * 119.61088 * 179.71834 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0020 12 7 2.4326 -6.1006 0.0024 13 6 1.9708 -7.4070 0.0024 14 7 0.6749 -7.6500 0.0015 15 6 0.1778 -8.8797 0.0009 16 6 0.9794 -9.9814 0.0017 17 9 0.4425 -11.2211 0.0006 18 6 2.3781 -9.8065 0.0026 19 7 3.2203 -10.8418 0.0089 20 6 4.5168 -10.6218 0.0048 21 6 5.0186 -9.3189 0.0052 22 7 4.2066 -8.2851 0.0040 23 6 2.8882 -8.4834 0.0029 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6249 -2.5563 0.8919 27 1 2.8727 -3.6038 0.8909 28 1 2.8715 -3.6046 -0.8890 29 1 0.8535 -5.0450 -0.8877 30 1 0.8542 -5.0446 0.8923 31 1 3.3862 -5.9233 0.0019 32 1 -0.8941 -9.0115 -0.0002 33 1 5.2007 -11.4577 0.0054 34 1 6.0865 -9.1583 0.0063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = 2.803733 kcal Electronic energy + Delta-G solvation = -19803.343582 eV Core-core repulsion = 16456.564833 eV Total energy + Delta-G solvation = -3346.778749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.81157 -42.71740 -39.92493 -37.68665 -36.03046 -35.18643 -33.30995 -32.82620 -30.56171 -28.29351 -26.71893 -26.20279 -24.74973 -23.15732 -22.18901 -20.53178 -19.40739 -19.27334 -18.41990 -18.02575 -17.26565 -17.04004 -16.51526 -16.37715 -16.23180 -15.73378 -15.61255 -15.21930 -14.64685 -14.60848 -14.29494 -13.74722 -13.63130 -13.49149 -12.90807 -12.85085 -12.77799 -12.55569 -12.34250 -11.76269 -11.51068 -11.18724 -10.94002 -10.91972 -10.72264 -10.55161 -10.38745 -8.67640 -8.19316 -6.30196 -0.91547 -0.72481 0.60324 1.41658 1.42141 1.54977 1.80744 1.86884 2.42332 2.71202 2.76652 2.78894 3.00724 3.08348 3.14681 3.55549 3.85169 3.87398 4.03601 4.16946 4.23106 4.35651 4.44753 4.57049 4.95824 4.97734 5.06372 5.16074 5.35528 5.51684 5.71952 5.80316 5.85059 5.98933 6.13394 6.24173 6.51254 6.86952 6.92956 7.39266 8.92770 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.032617 B = 0.003150 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.247233 B = 8886.121083 C = 9718.619162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.106 4.106 11 C 0.139 3.861 12 N -0.676 5.676 13 C 0.451 3.549 14 N -0.552 5.552 15 C 0.144 3.856 16 C -0.021 4.021 17 F -0.129 7.129 18 C 0.103 3.897 19 N -0.461 5.461 20 C 0.122 3.878 21 C 0.070 3.930 22 N -0.419 5.419 23 C -0.011 4.011 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.424 0.576 32 H 0.199 0.801 33 H 0.230 0.770 34 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 -22.193 0.001 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.144 4.144 11 C 0.016 3.984 12 N -0.305 5.305 13 C 0.199 3.801 14 N -0.274 5.274 15 C -0.005 4.005 16 C -0.048 4.048 17 F -0.108 7.108 18 C -0.026 4.026 19 N -0.176 5.176 20 C -0.054 4.054 21 C -0.105 4.105 22 N -0.134 5.134 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.264 0.736 32 H 0.215 0.785 33 H 0.246 0.754 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.291 -21.189 0.008 23.136 hybrid contribution 0.648 0.126 -0.004 0.661 sum 9.940 -21.062 0.004 23.290 Atomic orbital electron populations 1.70101 1.07799 1.27712 1.51705 1.25974 0.95746 1.03379 0.94817 0.85404 0.79172 0.78840 0.77653 1.18404 1.20556 1.20547 1.21708 0.93670 0.92172 1.50400 0.91856 1.18909 0.94293 0.92516 0.95372 1.21626 0.98634 0.92301 1.01799 1.21381 0.91301 0.84012 1.01746 1.44805 1.10615 1.01039 1.74047 1.18586 0.87941 0.85427 0.88178 1.67328 1.12015 1.23624 1.24459 1.22454 1.01935 0.84263 0.91882 1.17750 0.89285 0.81754 1.15982 1.91464 1.85543 1.38984 1.94763 1.19525 0.94529 0.90427 0.98130 1.68869 1.05350 1.31625 1.11742 1.25154 0.91644 1.00102 0.88522 1.24914 1.03112 0.88319 0.94189 1.68446 1.01340 1.36094 1.07560 1.19756 0.92939 0.92124 1.09349 0.92794 0.98575 0.98568 0.91814 0.91820 0.92022 0.92033 0.73629 0.78464 0.75363 0.75528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.11 -4.03 5.27 30.60 0.16 -3.87 16 11 C 0.14 4.67 5.70 86.38 0.49 5.17 16 12 N -0.68 -19.53 5.68 -343.80 -1.95 -21.49 16 13 C 0.45 13.19 7.55 133.95 1.01 14.20 16 14 N -0.55 -16.40 9.52 -193.03 -1.84 -18.24 16 15 C 0.14 3.62 11.04 84.11 0.93 4.54 16 16 C -0.02 -0.54 7.34 22.47 0.17 -0.38 16 17 F -0.13 -3.44 17.18 44.97 0.77 -2.67 16 18 C 0.10 2.71 6.61 40.44 0.27 2.98 16 19 N -0.46 -10.30 10.41 -187.88 -1.96 -12.26 16 20 C 0.12 1.48 11.21 85.08 0.95 2.44 16 21 C 0.07 0.85 11.20 85.09 0.95 1.80 16 22 N -0.42 -8.93 9.78 -187.63 -1.83 -10.76 16 23 C -0.01 -0.29 6.63 40.59 0.27 -0.02 16 24 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.42 11.00 7.88 -92.71 -0.73 10.27 16 32 H 0.20 3.65 8.06 -2.92 -0.02 3.63 16 33 H 0.23 0.32 8.06 -2.91 -0.02 0.29 16 34 H 0.23 0.42 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -72.07 305.78 1.96 -70.11 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.41 Total: 6.71 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 6.05 Total: -1.03 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -7.30 Total: -118.72 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.77 Total: -2.67 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.07 1.96 -70.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.918 kcal (2) G-P(sol) polarization free energy of solvation -72.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds