Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37103 * 119.99769 * 2 1 4 4 H 1.08000 * 119.99505 * 204.39013 * 3 2 1 5 5 C 1.38947 * 120.00241 * 24.38896 * 3 2 1 6 6 N 1.31422 * 119.99907 * 12.64661 * 5 3 2 7 7 Si 1.86797 * 120.00208 * 192.64753 * 5 3 2 8 8 H 1.48496 * 109.47247 * 89.99741 * 7 5 3 9 9 H 1.48505 * 109.47304 * 210.00391 * 7 5 3 10 10 H 1.48501 * 109.46671 * 329.99870 * 7 5 3 11 11 C 1.34772 * 119.99974 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99748 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00279 * 0.02562 * 11 2 1 14 14 N 1.46494 * 109.47287 * 179.97438 * 13 11 2 15 15 C 1.36898 * 125.06047 * 265.01884 * 14 13 11 16 16 C 1.34211 * 109.91709 * 179.73465 * 15 14 13 17 17 C 1.46511 * 106.99260 * 0.37370 * 16 15 14 18 18 C 1.37703 * 125.06716 * 84.99486 * 14 13 11 19 19 C 1.39121 * 133.41315 * 359.97438 * 18 14 13 20 20 C 1.37750 * 119.96940 * 180.02562 * 19 18 14 21 21 C 1.38802 * 120.68777 * 359.97438 * 20 19 18 22 22 C 1.37862 * 120.35235 * 0.02562 * 21 20 19 23 23 F 1.35108 * 120.19079 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47155 * 265.87044 * 1 2 3 25 25 H 1.09001 * 109.47388 * 25.86589 * 1 2 3 26 26 H 1.09002 * 109.47274 * 145.87141 * 1 2 3 27 27 H 0.97000 * 119.99940 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47210 * 59.99073 * 13 11 2 29 29 H 1.09001 * 109.46463 * 299.99626 * 13 11 2 30 30 H 1.08003 * 125.03840 * 0.02562 * 15 14 13 31 31 H 1.07998 * 126.50161 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.01531 * 0.02562 * 19 18 14 33 33 H 1.07995 * 119.65607 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.81979 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4344 2.2492 1.1881 7 14 2.3235 4.0074 0.1824 8 1 1.7867 4.5719 -1.0818 9 1 2.0033 4.9215 1.3081 10 1 3.7966 3.8565 0.0710 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 7 2.3374 -3.5857 0.0005 15 6 2.7745 -4.2467 -1.1158 16 6 3.6439 -5.2078 -0.7671 17 6 3.7675 -5.1644 0.6922 18 6 2.9263 -4.1232 1.1233 19 6 2.8365 -3.8344 2.4812 20 6 3.5678 -4.5667 3.3903 21 6 4.3979 -5.5955 2.9671 22 6 4.5027 -5.8995 1.6265 23 9 5.3113 -6.9019 1.2182 24 1 -0.3633 -0.0740 1.0250 25 1 -0.3634 0.9247 -0.4483 26 1 -0.3634 -0.8507 -0.5766 27 1 0.0145 3.0517 1.5353 28 1 0.7590 -2.5302 -0.8896 29 1 0.7585 -2.5298 0.8904 30 1 2.4689 -4.0243 -2.1275 31 1 4.1514 -5.8881 -1.4348 32 1 2.1936 -3.0365 2.8225 33 1 3.4939 -4.3385 4.4433 34 1 4.9653 -6.1604 3.6919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182826105.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = -2.974320 kcal Electronic energy + Delta-G solvation = -20794.292798 eV Core-core repulsion = 17414.970743 eV Total energy + Delta-G solvation = -3379.322055 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.57665 -41.07135 -38.48286 -36.56950 -34.81548 -32.57672 -31.68556 -29.81884 -28.69441 -27.17851 -26.10257 -24.26623 -22.48409 -21.73761 -20.36661 -19.21312 -17.16194 -17.04422 -16.67541 -16.37087 -15.68272 -15.36255 -15.21207 -14.90130 -14.57882 -14.25102 -14.03185 -13.57585 -13.03196 -12.75253 -12.53287 -12.37554 -12.23248 -11.66924 -11.46011 -11.40269 -11.28578 -11.14348 -11.08523 -10.98292 -10.43814 -10.40812 -9.37019 -9.14313 -8.63634 -8.02165 -7.82955 -7.32079 -6.45942 -4.03117 1.22168 1.72865 2.84436 3.07445 3.09056 3.18609 3.24339 3.64179 3.96230 4.04708 4.53583 4.68317 4.84516 4.92615 5.00652 5.11833 5.26290 5.35373 5.48061 5.55329 5.59364 5.80752 5.91330 6.07136 6.10727 6.28440 6.45029 6.61677 6.65056 6.87720 7.00425 7.01546 7.41896 7.44518 7.47862 7.97962 8.32587 9.03208 9.23657 9.77435 10.58538 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029376 B = 0.004415 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.915285 B = 6340.876177 C = 6549.404349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.440 5.440 3 C -0.308 4.308 4 H 0.099 0.901 5 C 0.033 3.967 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.423 3.577 12 O -0.570 6.570 13 C 0.096 3.904 14 N -0.454 5.454 15 C 0.070 3.930 16 C -0.205 4.205 17 C -0.145 4.145 18 C 0.141 3.859 19 C -0.126 4.126 20 C -0.082 4.082 21 C -0.187 4.187 22 C 0.136 3.864 23 F -0.143 7.143 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.269 0.731 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.168 0.832 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -11.511 -0.062 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.159 5.159 3 C -0.436 4.436 4 H 0.116 0.884 5 C -0.171 4.171 6 N -0.519 5.519 7 Si 0.754 3.246 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.209 3.791 12 O -0.453 6.453 13 C -0.029 4.029 14 N -0.134 5.134 15 C -0.056 4.056 16 C -0.230 4.230 17 C -0.150 4.150 18 C 0.033 3.967 19 C -0.146 4.146 20 C -0.101 4.101 21 C -0.207 4.207 22 C 0.116 3.884 23 F -0.122 7.122 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.320 -11.115 -0.034 11.193 hybrid contribution 0.227 0.925 -0.168 0.967 sum -1.093 -10.190 -0.202 10.250 Atomic orbital electron populations 1.21562 0.81116 1.00226 1.00815 1.43581 1.05465 1.04547 1.62347 1.19657 1.00740 0.83834 1.39323 0.88366 1.25363 0.96571 1.00252 0.94870 1.69978 1.19127 1.29891 1.32908 0.85894 0.79751 0.80994 0.77937 1.20243 1.20805 1.19285 1.20217 0.88568 0.84786 0.85548 1.90603 1.13399 1.86434 1.54870 1.21712 0.90668 0.85609 1.04960 1.43588 1.37695 1.27514 1.04630 1.21778 0.98318 0.94230 0.91255 1.21435 1.05220 1.04198 0.92142 1.19017 1.02110 0.99724 0.94181 1.17882 0.95855 0.94420 0.88546 1.20125 1.03264 1.01780 0.89448 1.20518 0.95770 0.94690 0.99158 1.20733 1.04487 1.02114 0.93373 1.16994 0.92044 0.87491 0.91875 1.91436 1.70977 1.58384 1.91402 0.92664 0.90278 0.95669 0.92052 0.87684 0.87887 0.81483 0.83609 0.85791 0.85047 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.16 8.44 59.85 0.51 2.67 16 2 N -0.44 -10.62 3.01 -122.19 -0.37 -10.99 16 3 C -0.31 -8.29 9.24 -14.93 -0.14 -8.43 16 4 H 0.10 2.81 7.45 -52.49 -0.39 2.42 16 5 C 0.03 0.85 5.04 -17.46 -0.09 0.76 16 6 N -0.88 -22.46 10.83 55.50 0.60 -21.86 16 7 Si 0.93 20.18 29.57 -169.99 -5.03 15.15 16 8 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 11 C 0.42 9.76 7.70 -10.99 -0.08 9.67 16 12 O -0.57 -15.64 16.14 5.54 0.09 -15.55 16 13 C 0.10 1.63 5.09 -5.20 -0.03 1.61 16 14 N -0.45 -7.98 2.27 -115.71 -0.26 -8.24 16 15 C 0.07 1.09 11.28 -16.71 -0.19 0.90 16 16 C -0.21 -3.26 11.08 -37.67 -0.42 -3.67 16 17 C -0.14 -2.55 6.36 -105.09 -0.67 -3.22 16 18 C 0.14 2.56 6.80 -84.00 -0.57 1.99 16 19 C -0.13 -2.09 9.98 -39.43 -0.39 -2.48 16 20 C -0.08 -1.16 10.01 -39.55 -0.40 -1.56 16 21 C -0.19 -2.68 10.01 -39.51 -0.40 -3.08 16 22 C 0.14 2.22 7.34 -39.14 -0.29 1.93 16 23 F -0.14 -2.28 17.28 2.25 0.04 -2.24 16 24 H 0.05 1.14 7.83 -51.93 -0.41 0.74 16 25 H 0.08 1.72 6.80 -51.93 -0.35 1.37 16 26 H 0.02 0.40 6.61 -51.93 -0.34 0.05 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.11 1.45 7.38 -51.93 -0.38 1.06 16 29 H 0.10 1.58 8.11 -51.93 -0.42 1.15 16 30 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -31.91 301.55 -7.08 -38.99 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -3.55 Total: 3.11 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.15 Total: -2.91 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.03 Total: -41.10 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.91 -7.08 -38.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182826105.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.017 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds