Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37103 * 119.99769 * 2 1 4 4 H 1.08000 * 119.99505 * 204.39013 * 3 2 1 5 5 C 1.38947 * 120.00241 * 24.38896 * 3 2 1 6 6 N 1.31422 * 119.99907 * 12.64661 * 5 3 2 7 7 Si 1.86797 * 120.00208 * 192.64753 * 5 3 2 8 8 H 1.48496 * 109.47247 * 89.99741 * 7 5 3 9 9 H 1.48505 * 109.47304 * 210.00391 * 7 5 3 10 10 H 1.48501 * 109.46671 * 329.99870 * 7 5 3 11 11 C 1.34772 * 119.99974 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99748 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00279 * 0.02562 * 11 2 1 14 14 N 1.46494 * 109.47287 * 179.97438 * 13 11 2 15 15 C 1.36898 * 125.06047 * 265.01884 * 14 13 11 16 16 C 1.34211 * 109.91709 * 179.73465 * 15 14 13 17 17 C 1.46511 * 106.99260 * 0.37370 * 16 15 14 18 18 C 1.37703 * 125.06716 * 84.99486 * 14 13 11 19 19 C 1.39121 * 133.41315 * 359.97438 * 18 14 13 20 20 C 1.37750 * 119.96940 * 180.02562 * 19 18 14 21 21 C 1.38802 * 120.68777 * 359.97438 * 20 19 18 22 22 C 1.37862 * 120.35235 * 0.02562 * 21 20 19 23 23 F 1.35108 * 120.19079 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47155 * 265.87044 * 1 2 3 25 25 H 1.09001 * 109.47388 * 25.86589 * 1 2 3 26 26 H 1.09002 * 109.47274 * 145.87141 * 1 2 3 27 27 H 0.97000 * 119.99940 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47210 * 59.99073 * 13 11 2 29 29 H 1.09001 * 109.46463 * 299.99626 * 13 11 2 30 30 H 1.08003 * 125.03840 * 0.02562 * 15 14 13 31 31 H 1.07998 * 126.50161 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.01531 * 0.02562 * 19 18 14 33 33 H 1.07995 * 119.65607 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.81979 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4344 2.2492 1.1881 7 14 2.3235 4.0074 0.1824 8 1 1.7867 4.5719 -1.0818 9 1 2.0033 4.9215 1.3081 10 1 3.7966 3.8565 0.0710 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 7 2.3374 -3.5857 0.0005 15 6 2.7745 -4.2467 -1.1158 16 6 3.6439 -5.2078 -0.7671 17 6 3.7675 -5.1644 0.6922 18 6 2.9263 -4.1232 1.1233 19 6 2.8365 -3.8344 2.4812 20 6 3.5678 -4.5667 3.3903 21 6 4.3979 -5.5955 2.9671 22 6 4.5027 -5.8995 1.6265 23 9 5.3113 -6.9019 1.2182 24 1 -0.3633 -0.0740 1.0250 25 1 -0.3634 0.9247 -0.4483 26 1 -0.3634 -0.8507 -0.5766 27 1 0.0145 3.0517 1.5353 28 1 0.7590 -2.5302 -0.8896 29 1 0.7585 -2.5298 0.8904 30 1 2.4689 -4.0243 -2.1275 31 1 4.1514 -5.8881 -1.4348 32 1 2.1936 -3.0365 2.8225 33 1 3.4939 -4.3385 4.4433 34 1 4.9653 -6.1604 3.6919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182826105.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = -20.910723 kcal Electronic energy + Delta-G solvation = -20795.070579 eV Core-core repulsion = 17414.970743 eV Total energy + Delta-G solvation = -3380.099836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80206 -42.31794 -40.23532 -37.79275 -36.68748 -34.06157 -33.43981 -31.07262 -29.90728 -28.74421 -27.69607 -26.02750 -23.70765 -22.96556 -21.74972 -20.73023 -18.96307 -18.46858 -18.06876 -17.87250 -16.88407 -16.80188 -16.57313 -16.49166 -16.00655 -15.81278 -15.54286 -15.06192 -14.35164 -14.01756 -13.99769 -13.78654 -13.60406 -13.37404 -13.16309 -13.00103 -12.66871 -12.52771 -12.34696 -12.32920 -12.30401 -12.17258 -11.03994 -10.75804 -10.32491 -9.72613 -9.25875 -8.57583 -8.37662 -6.04541 0.00462 0.51645 1.34029 1.39534 1.49745 1.61914 1.87829 1.90788 2.25985 2.74015 3.01763 3.04122 3.33329 3.67132 3.79419 3.91799 3.94784 4.10210 4.14405 4.23989 4.39110 4.61552 4.67059 4.78067 4.91685 5.00218 5.12489 5.26677 5.35944 5.40775 5.43708 5.67395 5.82012 6.01651 6.19135 6.28021 6.44941 7.11469 7.38343 7.93335 8.63016 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029376 B = 0.004415 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.915285 B = 6340.876177 C = 6549.404349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.455 5.455 3 C -0.344 4.344 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.891 5.891 7 Si 0.985 3.015 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.280 1.280 11 C 0.417 3.583 12 O -0.624 6.624 13 C 0.109 3.891 14 N -0.466 5.466 15 C 0.064 3.936 16 C -0.218 4.218 17 C -0.170 4.170 18 C 0.112 3.888 19 C -0.147 4.147 20 C -0.075 4.075 21 C -0.180 4.180 22 C 0.117 3.883 23 F -0.144 7.144 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.275 0.725 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.200 0.800 31 H 0.166 0.834 32 H 0.122 0.878 33 H 0.166 0.834 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -12.050 0.142 12.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.174 5.174 3 C -0.472 4.472 4 H 0.084 0.916 5 C -0.199 4.199 6 N -0.529 5.529 7 Si 0.809 3.191 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.206 1.206 11 C 0.205 3.795 12 O -0.511 6.511 13 C -0.016 4.016 14 N -0.147 5.147 15 C -0.060 4.060 16 C -0.242 4.242 17 C -0.176 4.176 18 C 0.005 3.995 19 C -0.168 4.168 20 C -0.094 4.094 21 C -0.199 4.199 22 C 0.097 3.903 23 F -0.123 7.123 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.217 0.783 31 H 0.183 0.817 32 H 0.140 0.860 33 H 0.183 0.817 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.276 -11.670 0.171 11.891 hybrid contribution 0.553 1.042 -0.174 1.192 sum -1.723 -10.628 -0.003 10.767 Atomic orbital electron populations 1.21575 0.78850 1.01470 1.01086 1.43827 1.06936 1.04263 1.62350 1.19525 1.00332 0.86058 1.41318 0.91603 1.26004 0.96970 1.02693 0.94186 1.70033 1.19450 1.30892 1.32532 0.85053 0.78149 0.77328 0.78552 1.18796 1.19767 1.20570 1.21231 0.88303 0.86430 0.83495 1.90562 1.16069 1.87598 1.56823 1.21674 0.90086 0.82029 1.07795 1.43733 1.38238 1.27635 1.05064 1.22376 0.97862 0.93640 0.92153 1.21796 1.05594 1.04920 0.91861 1.19406 1.02586 1.00181 0.95391 1.18269 0.96725 0.95188 0.89365 1.20378 1.04303 1.02535 0.89599 1.20940 0.94320 0.93622 1.00482 1.21127 1.03882 1.01774 0.93160 1.17267 0.92484 0.87850 0.92691 1.91426 1.70976 1.58365 1.91527 0.93381 0.92175 0.90604 0.91527 0.83606 0.85965 0.78286 0.81678 0.85975 0.81687 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.43 8.44 127.77 1.08 5.50 16 2 N -0.45 -22.02 3.01 -658.89 -1.98 -24.00 16 3 C -0.34 -18.99 9.24 84.04 0.78 -18.22 16 4 H 0.07 3.97 7.45 -2.91 -0.02 3.95 16 5 C 0.00 0.21 5.04 84.92 0.43 0.64 16 6 N -0.89 -45.11 10.83 21.66 0.23 -44.88 16 7 Si 0.99 41.44 29.57 68.60 2.03 43.47 16 8 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 C 0.42 19.26 7.70 87.66 0.67 19.94 16 12 O -0.62 -35.20 16.14 -3.08 -0.05 -35.25 16 13 C 0.11 3.51 5.09 85.63 0.44 3.95 16 14 N -0.47 -15.87 2.27 -520.00 -1.18 -17.05 16 15 C 0.06 1.92 11.28 82.98 0.94 2.85 16 16 C -0.22 -6.73 11.08 23.51 0.26 -6.47 16 17 C -0.17 -5.94 6.36 -20.17 -0.13 -6.07 16 18 C 0.11 4.03 6.80 39.02 0.27 4.29 16 19 C -0.15 -4.83 9.98 22.37 0.22 -4.61 16 20 C -0.07 -1.99 10.01 22.29 0.22 -1.77 16 21 C -0.18 -4.82 10.01 22.32 0.22 -4.60 16 22 C 0.12 3.73 7.34 22.55 0.17 3.90 16 23 F -0.14 -4.48 17.28 44.97 0.78 -3.70 16 24 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 25 H 0.06 2.57 6.80 -2.39 -0.02 2.55 16 26 H 0.08 2.16 6.61 -2.39 -0.02 2.14 16 27 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 28 H 0.15 3.46 7.38 -2.39 -0.02 3.44 16 29 H 0.12 3.47 8.11 -2.39 -0.02 3.45 16 30 H 0.20 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.17 4.22 8.06 -2.91 -0.02 4.19 16 32 H 0.12 3.91 8.06 -2.91 -0.02 3.88 16 33 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.66 301.55 6.51 -65.15 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.12 Total: 16.92 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 5.56 Total: -0.65 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -2.93 Total: -85.93 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.05 Total: -35.25 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -71.66 6.51 -65.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182826105.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.235 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds