Wall clock time and date at job start Mon Mar 30 2020 01:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99913 * 2 1 4 4 H 1.07997 * 119.99776 * 202.35305 * 3 2 1 5 5 C 1.38815 * 120.00019 * 22.34105 * 3 2 1 6 6 N 1.31609 * 120.00014 * 11.35316 * 5 3 2 7 7 Si 1.86797 * 119.99718 * 191.35020 * 5 3 2 8 8 H 1.48495 * 109.47304 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47040 * 120.00209 * 7 5 3 10 10 H 1.48500 * 109.46921 * 240.00196 * 7 5 3 11 11 C 1.46492 * 120.00010 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47163 * 270.00149 * 11 2 1 13 13 C 1.40981 * 126.70114 * 95.28920 * 12 11 2 14 14 C 1.36864 * 103.88176 * 180.11734 * 13 12 11 15 15 C 1.47798 * 126.92732 * 179.97438 * 14 13 12 16 16 C 1.39586 * 120.11650 * 179.71601 * 15 14 13 17 17 C 1.37902 * 119.88063 * 180.02562 * 16 15 14 18 18 C 1.38602 * 120.11701 * 359.97438 * 17 16 15 19 19 F 1.35106 * 119.87813 * 179.97438 * 18 17 16 20 20 C 1.38600 * 120.23760 * 0.25635 * 18 17 16 21 21 C 1.37899 * 120.11616 * 359.48907 * 20 18 17 22 22 O 1.34499 * 106.13790 * 359.66546 * 14 13 12 23 23 N 1.20893 * 111.45526 * 0.22401 * 22 14 13 24 24 H 1.09003 * 109.47294 * 274.21416 * 1 2 3 25 25 H 1.09008 * 109.47164 * 34.21439 * 1 2 3 26 26 H 1.08996 * 109.47282 * 154.21487 * 1 2 3 27 27 H 0.97006 * 120.00471 * 179.97438 * 6 5 3 28 28 H 1.08997 * 109.47273 * 150.00505 * 11 2 1 29 29 H 1.09003 * 109.47544 * 29.99970 * 11 2 1 30 30 H 1.08000 * 128.05972 * 0.02562 * 13 12 11 31 31 H 1.07998 * 120.06338 * 0.03791 * 16 15 14 32 32 H 1.07998 * 119.94160 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.93726 * 179.72633 * 20 18 17 34 34 H 1.08002 * 120.05488 * 180.27782 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1687 1.2211 -0.3557 5 6 1.5337 2.3430 0.4570 6 7 0.3842 2.2692 1.0935 7 14 2.3366 4.0048 0.1685 8 1 3.6137 3.8168 -0.5655 9 1 1.4267 4.8615 -0.6336 10 1 2.6072 4.6572 1.4747 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 1.6634 -2.5938 2.1816 14 6 2.3068 -2.6512 3.3883 15 6 1.9088 -3.4447 4.5699 16 6 2.6779 -3.4014 5.7340 17 6 2.3024 -4.1442 6.8336 18 6 1.1633 -4.9323 6.7844 19 9 0.8001 -5.6584 7.8643 20 6 0.3987 -4.9826 5.6295 21 6 0.7623 -4.2397 4.5260 22 8 3.3780 -1.8452 3.2794 23 7 3.4364 -1.3326 2.1861 24 1 -0.3634 0.0755 1.0249 25 1 -0.3634 0.8499 -0.5779 26 1 -0.3633 -0.9253 -0.4470 27 1 -0.0461 3.0776 1.4132 28 1 3.1498 -1.1386 -0.5132 29 1 1.6084 -2.0286 -0.5129 30 1 0.7630 -3.1095 1.8821 31 1 3.5653 -2.7872 5.7736 32 1 2.8969 -4.1117 7.7346 33 1 -0.4855 -5.6017 5.5950 34 1 0.1632 -4.2762 3.6281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206836540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:37 Heat of formation + Delta-G solvation = 66.165265 kcal Electronic energy + Delta-G solvation = -20229.588068 eV Core-core repulsion = 16853.264130 eV Total energy + Delta-G solvation = -3376.323938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.09787 -44.24608 -39.09199 -35.96020 -33.53427 -32.68687 -31.43783 -30.90535 -28.99176 -26.81994 -25.82957 -23.67650 -23.33566 -22.08462 -21.55715 -19.60511 -18.01388 -17.27756 -17.04787 -16.65691 -16.34654 -15.78085 -15.52804 -14.84042 -14.29552 -13.88403 -13.75131 -13.59328 -13.38487 -13.25283 -12.96692 -12.73120 -12.25977 -11.70133 -11.31793 -11.23321 -10.94291 -10.82144 -10.59445 -10.39038 -10.01606 -9.96043 -9.92739 -9.38032 -9.37812 -8.61109 -8.12948 -6.89971 -5.78367 -3.24641 0.52613 1.01192 2.16177 2.90633 3.36141 3.37906 3.43976 3.46762 3.52733 4.01929 4.45986 4.48743 4.62255 4.73964 4.88388 5.00039 5.16790 5.41251 5.47965 5.60081 5.65021 5.71144 5.73423 5.87544 5.90453 6.08566 6.22372 6.37902 6.51224 6.60305 6.63526 6.68994 7.31454 7.66267 7.79201 8.32421 8.92797 9.17398 9.77413 10.24989 11.26719 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.028204 B = 0.003825 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.532783 B = 7318.586517 C = 7430.379882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.586 5.586 3 C -0.254 4.254 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.214 3.786 12 C 0.021 3.979 13 C -0.199 4.199 14 C -0.025 4.025 15 C -0.010 4.010 16 C -0.072 4.072 17 C -0.150 4.150 18 C 0.098 3.902 19 F -0.140 7.140 20 C -0.149 4.149 21 C -0.068 4.068 22 O 0.096 5.904 23 N -0.348 5.348 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.000 1.000 27 H 0.253 0.747 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -15.518 7.935 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.384 4.384 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.085 3.915 12 C -0.141 4.141 13 C -0.220 4.220 14 C -0.088 4.088 15 C -0.012 4.012 16 C -0.091 4.091 17 C -0.169 4.169 18 C 0.078 3.922 19 F -0.119 7.119 20 C -0.168 4.168 21 C -0.086 4.086 22 O 0.029 5.971 23 N -0.052 5.052 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.182 0.818 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.204 -14.554 7.809 16.560 hybrid contribution -0.547 0.503 0.340 0.818 sum 0.657 -14.051 8.150 16.256 Atomic orbital electron populations 1.20865 0.81958 0.95944 0.99458 1.44174 1.02149 1.00219 1.84236 1.19313 0.98279 0.84827 1.35944 0.90976 1.25079 0.97602 0.98798 0.97914 1.70076 1.17798 1.27167 1.40025 0.86130 0.78763 0.83882 0.77497 1.20123 1.21494 1.21646 1.19498 0.97226 0.88976 0.85800 1.25241 0.91076 0.94847 1.02906 1.22568 1.02991 1.03596 0.92885 1.22238 0.92336 0.98485 0.95789 1.17704 0.95893 0.96786 0.90780 1.21188 0.99427 0.97396 0.91041 1.21065 0.96891 0.98527 1.00377 1.17845 0.95842 0.94342 0.84140 1.91502 1.91433 1.75565 1.53387 1.21018 1.01294 1.02350 0.92138 1.20982 0.94925 0.94186 0.98550 1.84898 1.38657 1.44858 1.28637 1.73793 1.23201 1.16386 0.91821 0.95365 0.93157 0.98166 0.93702 0.91808 0.91730 0.81794 0.84010 0.84264 0.84160 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 9.01 59.84 0.54 4.47 16 2 N -0.59 -14.79 2.91 -182.50 -0.53 -15.32 16 3 C -0.25 -7.11 9.67 -15.06 -0.15 -7.25 16 4 H 0.07 2.01 7.84 -52.49 -0.41 1.60 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.91 -26.69 10.58 55.49 0.59 -26.10 16 7 Si 0.91 22.32 29.57 -169.99 -5.03 17.30 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 C 0.21 4.45 6.29 -5.20 -0.03 4.42 16 12 C 0.02 0.42 6.89 -82.21 -0.57 -0.14 16 13 C -0.20 -3.38 10.48 -39.04 -0.41 -3.79 16 14 C -0.02 -0.41 7.16 -36.17 -0.26 -0.67 16 15 C -0.01 -0.13 5.87 -104.98 -0.62 -0.75 16 16 C -0.07 -0.82 9.73 -39.20 -0.38 -1.20 16 17 C -0.15 -1.51 10.01 -39.57 -0.40 -1.90 16 18 C 0.10 1.03 7.30 -39.31 -0.29 0.74 16 19 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 20 C -0.15 -1.46 10.01 -39.57 -0.40 -1.85 16 21 C -0.07 -0.73 9.58 -39.20 -0.38 -1.11 16 22 O 0.10 1.84 11.04 15.95 0.18 2.01 16 23 N -0.35 -7.58 12.05 33.51 0.40 -7.17 16 24 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 25 H 0.05 1.31 7.19 -51.92 -0.37 0.94 16 26 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.06 1.13 7.86 -51.93 -0.41 0.72 16 30 H 0.16 2.25 7.47 -52.49 -0.39 1.86 16 31 H 0.14 1.48 7.96 -52.49 -0.42 1.07 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.28 7.16 -52.49 -0.38 0.90 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -32.02 305.08 -6.74 -38.75 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -3.57 Total: -3.59 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.42 Total: -8.99 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.46 Total: -48.60 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.18 Total: 2.01 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.02 -6.74 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206836540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.919 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds