Wall clock time and date at job start Mon Mar 30 2020 01:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99913 * 2 1 4 4 H 1.07997 * 119.99776 * 202.35305 * 3 2 1 5 5 C 1.38815 * 120.00019 * 22.34105 * 3 2 1 6 6 N 1.31609 * 120.00014 * 11.35316 * 5 3 2 7 7 Si 1.86797 * 119.99718 * 191.35020 * 5 3 2 8 8 H 1.48495 * 109.47304 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47040 * 120.00209 * 7 5 3 10 10 H 1.48500 * 109.46921 * 240.00196 * 7 5 3 11 11 C 1.46492 * 120.00010 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47163 * 270.00149 * 11 2 1 13 13 C 1.40981 * 126.70114 * 95.28920 * 12 11 2 14 14 C 1.36864 * 103.88176 * 180.11734 * 13 12 11 15 15 C 1.47798 * 126.92732 * 179.97438 * 14 13 12 16 16 C 1.39586 * 120.11650 * 179.71601 * 15 14 13 17 17 C 1.37902 * 119.88063 * 180.02562 * 16 15 14 18 18 C 1.38602 * 120.11701 * 359.97438 * 17 16 15 19 19 F 1.35106 * 119.87813 * 179.97438 * 18 17 16 20 20 C 1.38600 * 120.23760 * 0.25635 * 18 17 16 21 21 C 1.37899 * 120.11616 * 359.48907 * 20 18 17 22 22 O 1.34499 * 106.13790 * 359.66546 * 14 13 12 23 23 N 1.20893 * 111.45526 * 0.22401 * 22 14 13 24 24 H 1.09003 * 109.47294 * 274.21416 * 1 2 3 25 25 H 1.09008 * 109.47164 * 34.21439 * 1 2 3 26 26 H 1.08996 * 109.47282 * 154.21487 * 1 2 3 27 27 H 0.97006 * 120.00471 * 179.97438 * 6 5 3 28 28 H 1.08997 * 109.47273 * 150.00505 * 11 2 1 29 29 H 1.09003 * 109.47544 * 29.99970 * 11 2 1 30 30 H 1.08000 * 128.05972 * 0.02562 * 13 12 11 31 31 H 1.07998 * 120.06338 * 0.03791 * 16 15 14 32 32 H 1.07998 * 119.94160 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.93726 * 179.72633 * 20 18 17 34 34 H 1.08002 * 120.05488 * 180.27782 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1687 1.2211 -0.3557 5 6 1.5337 2.3430 0.4570 6 7 0.3842 2.2692 1.0935 7 14 2.3366 4.0048 0.1685 8 1 3.6137 3.8168 -0.5655 9 1 1.4267 4.8615 -0.6336 10 1 2.6072 4.6572 1.4747 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 1.6634 -2.5938 2.1816 14 6 2.3068 -2.6512 3.3883 15 6 1.9088 -3.4447 4.5699 16 6 2.6779 -3.4014 5.7340 17 6 2.3024 -4.1442 6.8336 18 6 1.1633 -4.9323 6.7844 19 9 0.8001 -5.6584 7.8643 20 6 0.3987 -4.9826 5.6295 21 6 0.7623 -4.2397 4.5260 22 8 3.3780 -1.8452 3.2794 23 7 3.4364 -1.3326 2.1861 24 1 -0.3634 0.0755 1.0249 25 1 -0.3634 0.8499 -0.5779 26 1 -0.3633 -0.9253 -0.4470 27 1 -0.0461 3.0776 1.4132 28 1 3.1498 -1.1386 -0.5132 29 1 1.6084 -2.0286 -0.5129 30 1 0.7630 -3.1095 1.8821 31 1 3.5653 -2.7872 5.7736 32 1 2.8969 -4.1117 7.7346 33 1 -0.4855 -5.6017 5.5950 34 1 0.1632 -4.2762 3.6281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206836540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:36 Heat of formation + Delta-G solvation = 48.342695 kcal Electronic energy + Delta-G solvation = -20230.360913 eV Core-core repulsion = 16853.264130 eV Total energy + Delta-G solvation = -3377.096783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.93661 -45.71716 -39.95749 -37.79730 -35.10737 -33.94314 -32.90853 -32.20383 -30.11850 -28.55084 -27.86841 -24.76993 -24.45160 -23.51604 -23.06284 -20.94218 -19.09491 -18.80474 -18.45549 -18.32458 -17.22527 -16.92816 -16.62457 -16.60654 -15.53179 -15.35067 -15.26945 -14.84179 -14.73287 -14.45783 -14.15640 -13.63877 -13.56609 -13.50496 -12.95331 -12.87044 -12.65312 -12.44051 -12.14046 -12.05930 -12.00633 -11.74742 -11.07284 -10.92117 -10.71922 -10.17540 -9.22894 -8.92796 -7.89880 -5.38346 -0.46451 0.21397 0.95253 1.39019 1.42550 1.47633 1.53794 2.14950 2.47451 2.62143 3.19190 3.22924 3.44974 3.51136 3.74853 3.79414 3.87659 4.13806 4.22648 4.24892 4.42835 4.61234 4.78463 4.83250 4.87706 4.90759 4.93356 5.06782 5.14158 5.23718 5.32348 5.37345 5.58273 5.71064 5.78368 6.26339 7.09258 7.50138 7.78153 8.19205 9.13256 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.028204 B = 0.003825 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.532783 B = 7318.586517 C = 7430.379882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.603 5.603 3 C -0.261 4.261 4 H 0.066 0.934 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.268 1.268 9 H -0.284 1.284 10 H -0.295 1.295 11 C 0.213 3.787 12 C 0.001 3.999 13 C -0.206 4.206 14 C -0.010 4.010 15 C -0.039 4.039 16 C -0.075 4.075 17 C -0.148 4.148 18 C 0.097 3.903 19 F -0.141 7.141 20 C -0.145 4.145 21 C -0.061 4.061 22 O 0.088 5.912 23 N -0.391 5.391 24 H -0.001 1.001 25 H 0.022 0.978 26 H 0.044 0.956 27 H 0.248 0.752 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.198 0.802 31 H 0.144 0.856 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -17.337 8.563 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.326 5.326 3 C -0.391 4.391 4 H 0.083 0.917 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.192 1.192 9 H -0.210 1.210 10 H -0.223 1.223 11 C 0.086 3.914 12 C -0.159 4.159 13 C -0.227 4.227 14 C -0.074 4.074 15 C -0.040 4.040 16 C -0.094 4.094 17 C -0.167 4.167 18 C 0.077 3.923 19 F -0.120 7.120 20 C -0.163 4.163 21 C -0.080 4.080 22 O 0.022 5.978 23 N -0.096 5.096 24 H 0.018 0.982 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.215 0.785 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.647 -16.406 8.430 18.456 hybrid contribution -0.345 0.866 0.270 0.971 sum 0.303 -15.539 8.700 17.811 Atomic orbital electron populations 1.20622 0.81675 0.96903 0.97574 1.44300 1.02602 1.00964 1.84728 1.19525 0.98065 0.86424 1.35136 0.91651 1.25772 0.98378 1.01841 0.98388 1.70230 1.19049 1.27442 1.41449 0.85221 0.78276 0.80116 0.76992 1.19215 1.20988 1.22275 1.19613 0.97244 0.88155 0.86417 1.25229 0.91948 0.96078 1.02650 1.22870 1.03887 1.03479 0.92452 1.22820 0.90757 0.96995 0.96823 1.17817 0.97727 0.98231 0.90231 1.21287 0.99458 0.97586 0.91062 1.21253 0.97006 0.97781 1.00652 1.18064 0.95909 0.93967 0.84328 1.91508 1.91413 1.75533 1.53499 1.21291 1.01828 1.01956 0.91247 1.21200 0.94011 0.93165 0.99597 1.84825 1.39879 1.45370 1.27711 1.73771 1.24892 1.18015 0.92959 0.98242 0.95920 0.93764 0.94246 0.92357 0.87906 0.78495 0.83785 0.82155 0.81497 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.51 9.01 127.77 1.15 9.66 16 2 N -0.60 -30.38 2.91 -731.32 -2.13 -32.51 16 3 C -0.26 -14.79 9.67 84.03 0.81 -13.98 16 4 H 0.07 3.70 7.84 -2.91 -0.02 3.68 16 5 C -0.05 -2.79 5.13 84.86 0.44 -2.36 16 6 N -0.94 -56.24 10.58 21.65 0.23 -56.01 16 7 Si 0.97 46.59 29.57 68.60 2.03 48.62 16 8 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 10 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 11 C 0.21 8.68 6.29 85.64 0.54 9.22 16 12 C 0.00 0.05 6.89 43.46 0.30 0.35 16 13 C -0.21 -6.66 10.48 22.62 0.24 -6.42 16 14 C -0.01 -0.33 7.16 24.48 0.18 -0.15 16 15 C -0.04 -0.93 5.87 -20.10 -0.12 -1.05 16 16 C -0.08 -1.60 9.73 22.52 0.22 -1.38 16 17 C -0.15 -2.63 10.01 22.28 0.22 -2.41 16 18 C 0.10 1.75 7.30 22.44 0.16 1.91 16 19 F -0.14 -2.66 17.26 44.97 0.78 -1.88 16 20 C -0.14 -2.33 10.01 22.28 0.22 -2.11 16 21 C -0.06 -1.14 9.58 22.52 0.22 -0.93 16 22 O 0.09 3.39 11.04 67.24 0.74 4.13 16 23 N -0.39 -17.25 12.05 -48.84 -0.59 -17.84 16 24 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 25 H 0.02 1.17 7.19 -2.38 -0.02 1.16 16 26 H 0.04 1.70 7.84 -2.39 -0.02 1.68 16 27 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 28 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 29 H 0.10 3.32 7.86 -2.39 -0.02 3.30 16 30 H 0.20 4.78 7.47 -2.91 -0.02 4.75 16 31 H 0.14 2.91 7.96 -2.91 -0.02 2.88 16 32 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 2.31 7.16 -2.91 -0.02 2.29 16 Total: -1.00 -70.31 305.08 6.76 -63.55 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: 1.12 Total: 1.59 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.58 Total: -9.64 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -2.49 Total: -106.36 kcal Atomic # 8 Polarization: 3.39 SS G_CDS: 0.74 Total: 4.13 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -70.31 6.76 -63.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206836540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.891 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds