Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30531 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48499 * 109.47022 * 274.98757 * 3 2 1 5 5 H 1.48506 * 109.46900 * 34.98271 * 3 2 1 6 6 H 1.48490 * 109.47315 * 154.98639 * 3 2 1 7 7 C 1.40346 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00274 * 186.09920 * 7 2 1 9 9 C 1.41765 * 119.99677 * 6.10455 * 7 2 1 10 10 O 1.21822 * 120.00111 * 353.19286 * 9 7 2 11 11 C 1.47566 * 119.99774 * 173.19668 * 9 7 2 12 12 C 1.39955 * 120.09222 * 179.97438 * 11 9 7 13 13 C 1.37120 * 119.90353 * 180.02562 * 12 11 9 14 14 C 1.39159 * 120.09451 * 0.02562 * 13 12 11 15 15 O 1.35658 * 119.90514 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00057 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47178 * 179.97438 * 16 15 14 18 18 H 1.09003 * 112.85354 * 316.19500 * 17 16 15 19 19 C 1.53789 * 113.61359 * 87.50102 * 17 16 15 20 20 C 1.53782 * 87.08017 * 139.98251 * 19 17 16 21 21 H 1.09004 * 113.61239 * 220.02144 * 20 19 17 22 22 O 1.42899 * 113.69298 * 89.12721 * 20 19 17 23 23 C 1.53783 * 113.61574 * 184.99848 * 17 16 15 24 24 C 1.39165 * 120.19004 * 0.25486 * 14 13 12 25 25 C 1.37121 * 120.09203 * 359.48776 * 24 14 13 26 26 H 0.96993 * 120.00410 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.04668 * 0.02562 * 12 11 9 28 28 H 1.08000 * 119.95321 * 179.97438 * 13 12 11 29 29 H 1.09002 * 109.47475 * 60.00169 * 16 15 14 30 30 H 1.08999 * 109.46896 * 299.99636 * 16 15 14 31 31 H 1.08997 * 113.61289 * 254.52641 * 19 17 16 32 32 H 1.08996 * 113.61586 * 25.43055 * 19 17 16 33 33 H 0.96700 * 114.00396 * 82.46323 * 22 20 19 34 34 H 1.09000 * 113.61628 * 334.56350 * 23 17 16 35 35 H 1.08998 * 113.61807 * 105.39037 * 23 17 16 36 36 H 1.08001 * 119.95006 * 179.72226 * 24 14 13 37 37 H 1.08001 * 120.04735 * 180.26100 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.3814 2.1073 -1.3948 5 1 1.4933 2.6200 0.8027 6 1 3.5855 1.4121 0.5920 7 6 2.0071 -1.2154 0.0005 8 1 3.0825 -1.2180 0.0999 9 6 1.3043 -2.4397 -0.1295 10 8 0.0862 -2.4471 -0.1169 11 6 2.0484 -3.7051 -0.2799 12 6 1.3566 -4.9150 -0.4079 13 6 2.0519 -6.0886 -0.5469 14 6 3.4434 -6.0779 -0.5604 15 8 4.1274 -7.2413 -0.6977 16 6 5.5540 -7.1585 -0.7029 17 6 6.1457 -8.5600 -0.8652 18 1 5.6480 -9.3043 -0.2436 19 6 6.3131 -8.9919 -2.3317 20 6 7.6545 -9.6164 -1.9125 21 1 8.4510 -9.4707 -2.6422 22 8 7.5446 -10.9721 -1.4742 23 6 7.6796 -8.5970 -0.7613 24 6 4.1353 -4.8778 -0.4276 25 6 3.4478 -3.6990 -0.2934 26 1 -0.4850 0.8399 0.0004 27 1 0.2767 -4.9242 -0.3971 28 1 1.5189 -7.0227 -0.6453 29 1 5.8964 -6.7267 0.2376 30 1 5.8783 -6.5286 -1.5312 31 1 5.5742 -9.7235 -2.6585 32 1 6.4178 -8.1564 -3.0237 33 1 7.5283 -11.6181 -2.1936 34 1 8.1579 -7.6535 -1.0241 35 1 8.0437 -9.0084 0.1801 36 1 5.2153 -4.8745 -0.4341 37 1 3.9855 -2.7676 -0.1946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218431112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -86.739459 kcal Electronic energy + Delta-G solvation = -20085.593570 eV Core-core repulsion = 16793.806739 eV Total energy + Delta-G solvation = -3291.786830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15495 -39.22977 -37.44988 -35.76261 -35.04044 -32.69357 -30.75661 -29.60791 -28.33247 -26.49845 -26.05790 -23.39061 -22.50048 -21.48245 -19.93510 -19.56657 -17.80482 -17.44483 -16.64146 -16.10451 -15.77953 -15.53216 -15.11121 -14.61668 -14.23980 -13.83620 -13.70882 -13.03294 -12.95633 -12.79073 -12.69857 -12.43030 -12.32521 -11.85445 -11.59629 -11.37088 -11.25144 -11.07252 -11.04252 -10.59086 -10.54612 -10.36009 -10.27406 -10.01951 -9.92338 -8.97889 -8.44039 -7.47858 -7.44278 -6.31860 -4.90445 1.86247 2.03639 3.03739 3.11757 3.15145 3.34512 3.67742 3.99203 4.04775 4.25280 4.33114 4.43437 4.65464 4.69555 5.07328 5.12423 5.27313 5.31655 5.37896 5.41645 5.49210 5.50004 5.71387 5.80217 5.83654 5.91205 6.06098 6.12667 6.15565 6.35006 6.65644 6.86059 7.06343 7.24595 7.25807 7.37204 7.40358 7.86671 8.03368 8.78675 8.84159 10.30649 10.52721 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036075 B = 0.003062 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.963998 B = 9142.442028 C = 9779.775110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.080 3.920 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.390 3.610 10 O -0.544 6.544 11 C -0.138 4.138 12 C -0.056 4.056 13 C -0.163 4.163 14 C 0.112 3.888 15 O -0.318 6.318 16 C 0.069 3.931 17 C -0.101 4.101 18 H 0.104 0.896 19 C -0.165 4.165 20 C 0.077 3.923 21 H 0.069 0.931 22 O -0.552 6.552 23 C -0.125 4.125 24 C -0.221 4.221 25 C -0.057 4.057 26 H 0.274 0.726 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.381 0.619 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.543 -14.399 -4.064 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.550 4.550 8 H 0.092 0.908 9 C 0.286 3.714 10 O -0.434 6.434 11 C -0.139 4.139 12 C -0.075 4.075 13 C -0.182 4.182 14 C 0.067 3.933 15 O -0.232 6.232 16 C -0.006 4.006 17 C -0.120 4.120 18 H 0.122 0.878 19 C -0.203 4.203 20 C 0.018 3.982 21 H 0.087 0.913 22 O -0.357 6.357 23 C -0.162 4.162 24 C -0.240 4.240 25 C -0.075 4.075 26 H 0.085 0.915 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.229 0.771 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.713 -14.262 -3.489 20.786 hybrid contribution 0.778 0.722 -0.572 1.206 sum 15.491 -13.541 -4.061 20.972 Atomic orbital electron populations 1.69961 1.07564 1.28089 1.30820 1.26009 0.94622 1.01012 0.92718 0.86366 0.80535 0.81065 0.79022 1.19462 1.20130 1.18502 1.20924 0.95311 0.91822 1.46938 0.90812 1.18073 0.88389 0.85789 0.79162 1.90500 1.15101 1.87962 1.49799 1.21810 0.94102 0.97783 1.00228 1.21109 1.00447 0.90842 0.95057 1.20183 0.90567 0.98945 1.08487 1.19140 0.91636 0.84351 0.98161 1.85948 1.19133 1.29755 1.88360 1.22763 0.79350 0.97249 1.01269 1.22488 0.95298 0.96238 0.97945 0.87828 1.23714 0.98249 1.01519 0.96800 1.22679 0.96428 0.82400 0.96686 0.91314 1.86464 1.96645 1.15396 1.37221 1.23045 0.95363 0.98366 0.99459 1.21018 0.99345 0.92729 1.10907 1.21232 0.94127 0.97118 0.95006 0.91496 0.85066 0.86099 0.92064 0.92119 0.90589 0.89154 0.77148 0.88486 0.90095 0.86417 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.26 11.76 55.57 0.65 -20.60 16 2 C 0.08 2.14 5.49 -17.31 -0.10 2.05 16 3 Si 0.91 19.21 29.57 -169.99 -5.03 14.18 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.52 -14.29 8.83 -37.44 -0.33 -14.62 16 8 H 0.07 1.83 6.06 -52.49 -0.32 1.52 16 9 C 0.39 11.15 6.90 -34.43 -0.24 10.91 16 10 O -0.54 -17.45 14.92 5.08 0.08 -17.38 16 11 C -0.14 -3.29 5.89 -104.81 -0.62 -3.91 16 12 C -0.06 -1.22 9.57 -39.34 -0.38 -1.60 16 13 C -0.16 -3.06 9.95 -39.65 -0.39 -3.45 16 14 C 0.11 1.99 6.70 -38.90 -0.26 1.72 16 15 O -0.32 -4.96 10.12 -18.67 -0.19 -5.15 16 16 C 0.07 0.81 4.57 37.16 0.17 0.98 16 17 C -0.10 -1.01 3.95 -89.80 -0.35 -1.36 16 18 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 19 C -0.17 -1.41 7.47 -25.91 -0.19 -1.60 16 20 C 0.08 0.58 5.27 -25.92 -0.14 0.44 16 21 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 22 O -0.55 -4.50 13.59 -35.23 -0.48 -4.98 16 23 C -0.12 -0.99 7.47 -25.92 -0.19 -1.18 16 24 C -0.22 -3.88 8.99 -39.64 -0.36 -4.23 16 25 C -0.06 -1.16 9.41 -39.35 -0.37 -1.53 16 26 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 27 H 0.13 2.88 7.65 -52.49 -0.40 2.48 16 28 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 29 H 0.06 0.69 7.64 -51.93 -0.40 0.29 16 30 H 0.06 0.66 7.36 -51.93 -0.38 0.28 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 33 H 0.38 1.43 9.12 45.56 0.42 1.85 16 34 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.12 1.68 6.28 -52.49 -0.33 1.35 16 37 H 0.13 2.55 6.21 -52.49 -0.33 2.22 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -34.20 316.97 -7.75 -41.96 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.82 Total: 4.56 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.75 Total: -17.37 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.65 Total: -20.60 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.59 Total: -27.50 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.20 -7.75 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218431112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.783 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds