Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30531 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48499 * 109.47022 * 274.98757 * 3 2 1 5 5 H 1.48506 * 109.46900 * 34.98271 * 3 2 1 6 6 H 1.48490 * 109.47315 * 154.98639 * 3 2 1 7 7 C 1.40346 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00274 * 186.09920 * 7 2 1 9 9 C 1.41765 * 119.99677 * 6.10455 * 7 2 1 10 10 O 1.21822 * 120.00111 * 353.19286 * 9 7 2 11 11 C 1.47566 * 119.99774 * 173.19668 * 9 7 2 12 12 C 1.39955 * 120.09222 * 179.97438 * 11 9 7 13 13 C 1.37120 * 119.90353 * 180.02562 * 12 11 9 14 14 C 1.39159 * 120.09451 * 0.02562 * 13 12 11 15 15 O 1.35658 * 119.90514 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00057 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47178 * 179.97438 * 16 15 14 18 18 H 1.09003 * 112.85354 * 316.19500 * 17 16 15 19 19 C 1.53789 * 113.61359 * 87.50102 * 17 16 15 20 20 C 1.53782 * 87.08017 * 139.98251 * 19 17 16 21 21 H 1.09004 * 113.61239 * 220.02144 * 20 19 17 22 22 O 1.42899 * 113.69298 * 89.12721 * 20 19 17 23 23 C 1.53783 * 113.61574 * 184.99848 * 17 16 15 24 24 C 1.39165 * 120.19004 * 0.25486 * 14 13 12 25 25 C 1.37121 * 120.09203 * 359.48776 * 24 14 13 26 26 H 0.96993 * 120.00410 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.04668 * 0.02562 * 12 11 9 28 28 H 1.08000 * 119.95321 * 179.97438 * 13 12 11 29 29 H 1.09002 * 109.47475 * 60.00169 * 16 15 14 30 30 H 1.08999 * 109.46896 * 299.99636 * 16 15 14 31 31 H 1.08997 * 113.61289 * 254.52641 * 19 17 16 32 32 H 1.08996 * 113.61586 * 25.43055 * 19 17 16 33 33 H 0.96700 * 114.00396 * 82.46323 * 22 20 19 34 34 H 1.09000 * 113.61628 * 334.56350 * 23 17 16 35 35 H 1.08998 * 113.61807 * 105.39037 * 23 17 16 36 36 H 1.08001 * 119.95006 * 179.72226 * 24 14 13 37 37 H 1.08001 * 120.04735 * 180.26100 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.3814 2.1073 -1.3948 5 1 1.4933 2.6200 0.8027 6 1 3.5855 1.4121 0.5920 7 6 2.0071 -1.2154 0.0005 8 1 3.0825 -1.2180 0.0999 9 6 1.3043 -2.4397 -0.1295 10 8 0.0862 -2.4471 -0.1169 11 6 2.0484 -3.7051 -0.2799 12 6 1.3566 -4.9150 -0.4079 13 6 2.0519 -6.0886 -0.5469 14 6 3.4434 -6.0779 -0.5604 15 8 4.1274 -7.2413 -0.6977 16 6 5.5540 -7.1585 -0.7029 17 6 6.1457 -8.5600 -0.8652 18 1 5.6480 -9.3043 -0.2436 19 6 6.3131 -8.9919 -2.3317 20 6 7.6545 -9.6164 -1.9125 21 1 8.4510 -9.4707 -2.6422 22 8 7.5446 -10.9721 -1.4742 23 6 7.6796 -8.5970 -0.7613 24 6 4.1353 -4.8778 -0.4276 25 6 3.4478 -3.6990 -0.2934 26 1 -0.4850 0.8399 0.0004 27 1 0.2767 -4.9242 -0.3971 28 1 1.5189 -7.0227 -0.6453 29 1 5.8964 -6.7267 0.2376 30 1 5.8783 -6.5286 -1.5312 31 1 5.5742 -9.7235 -2.6585 32 1 6.4178 -8.1564 -3.0237 33 1 7.5283 -11.6181 -2.1936 34 1 8.1579 -7.6535 -1.0241 35 1 8.0437 -9.0084 0.1801 36 1 5.2153 -4.8745 -0.4341 37 1 3.9855 -2.7676 -0.1946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218431112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -110.769233 kcal Electronic energy + Delta-G solvation = -20086.635579 eV Core-core repulsion = 16793.806739 eV Total energy + Delta-G solvation = -3292.828840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25463 -40.24573 -39.10749 -37.47588 -35.76815 -34.78950 -32.30576 -31.17875 -29.54059 -28.31445 -26.67054 -24.53842 -24.07291 -22.81519 -21.35150 -20.59586 -19.13135 -18.60887 -18.06285 -17.50755 -17.06912 -16.76917 -16.06644 -15.94709 -15.58988 -15.38485 -14.84483 -14.58721 -14.46719 -14.35095 -13.84934 -13.54845 -13.34737 -13.24243 -13.10780 -12.93979 -12.71654 -12.44944 -12.22018 -12.03828 -11.91423 -11.65575 -11.49012 -11.08343 -10.99026 -10.62741 -9.98379 -9.61692 -9.03101 -8.35411 -7.06960 0.22032 0.48744 1.38474 1.38824 1.56379 2.19170 2.20165 2.22311 2.85664 3.19236 3.59796 3.65355 3.73519 3.77430 3.90282 3.94424 4.07425 4.25883 4.29354 4.37447 4.53144 4.54144 4.57815 4.72811 4.78315 4.79626 4.90833 5.08621 5.10023 5.20291 5.20528 5.32359 5.40886 5.45808 5.74480 5.82528 5.97802 6.49848 6.69774 6.80447 6.90334 8.24896 8.49054 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036075 B = 0.003062 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.963998 B = 9142.442028 C = 9779.775110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.021 3.979 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.242 1.242 7 C -0.544 4.544 8 H 0.097 0.903 9 C 0.364 3.636 10 O -0.602 6.602 11 C -0.182 4.182 12 C -0.067 4.067 13 C -0.165 4.165 14 C 0.130 3.870 15 O -0.322 6.322 16 C 0.059 3.941 17 C -0.108 4.108 18 H 0.084 0.916 19 C -0.165 4.165 20 C 0.081 3.919 21 H 0.093 0.907 22 O -0.573 6.573 23 C -0.120 4.120 24 C -0.209 4.209 25 C -0.053 4.053 26 H 0.282 0.718 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.398 0.602 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.506 -14.543 -4.655 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.198 4.198 3 Si 0.816 3.184 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.115 0.885 9 C 0.265 3.735 10 O -0.497 6.497 11 C -0.183 4.183 12 C -0.085 4.085 13 C -0.183 4.183 14 C 0.084 3.916 15 O -0.236 6.236 16 C -0.015 4.015 17 C -0.126 4.126 18 H 0.102 0.898 19 C -0.203 4.203 20 C 0.022 3.978 21 H 0.111 0.889 22 O -0.382 6.382 23 C -0.158 4.158 24 C -0.227 4.227 25 C -0.071 4.071 26 H 0.093 0.907 27 H 0.130 0.870 28 H 0.160 0.840 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.248 0.752 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.178 0.822 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 18.711 -14.452 -4.088 23.993 hybrid contribution -0.381 0.552 -0.402 0.782 sum 18.330 -13.900 -4.490 23.438 Atomic orbital electron populations 1.70114 1.10121 1.29907 1.31741 1.27341 0.95500 1.05770 0.91168 0.85006 0.79286 0.74556 0.79566 1.18406 1.19378 1.16513 1.21449 0.96605 0.92323 1.47021 0.88487 1.18827 0.88166 0.88343 0.78185 1.90437 1.17327 1.89256 1.52652 1.21471 0.95708 0.96402 1.04737 1.20994 0.99781 0.91627 0.96145 1.20300 0.91590 0.98509 1.07923 1.19198 0.91422 0.85314 0.95668 1.85981 1.21552 1.28541 1.87536 1.23159 0.76883 0.98927 1.02544 1.22508 0.96587 0.94702 0.98834 0.89757 1.23753 0.98835 1.01781 0.95917 1.22712 0.96355 0.81991 0.96746 0.88944 1.86422 1.96653 1.16233 1.38891 1.23107 0.93467 0.99582 0.99598 1.21317 1.01270 0.91198 1.08949 1.21278 0.92524 0.98769 0.94527 0.90747 0.87019 0.83974 0.91023 0.90326 0.91460 0.88143 0.75164 0.86378 0.90652 0.82229 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.49 11.76 21.89 0.26 -47.23 16 2 C 0.02 1.14 5.49 85.40 0.47 1.61 16 3 Si 1.00 39.14 29.57 68.60 2.03 41.17 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 7 C -0.54 -30.62 8.83 23.66 0.21 -30.42 16 8 H 0.10 4.79 6.06 -2.91 -0.02 4.77 16 9 C 0.36 21.96 6.90 25.61 0.18 22.13 16 10 O -0.60 -41.41 14.92 -4.74 -0.07 -41.48 16 11 C -0.18 -8.98 5.89 -19.99 -0.12 -9.10 16 12 C -0.07 -3.03 9.57 22.42 0.21 -2.81 16 13 C -0.16 -6.09 9.95 22.23 0.22 -5.87 16 14 C 0.13 4.30 6.70 22.71 0.15 4.45 16 15 O -0.32 -9.11 10.12 -89.74 -0.91 -10.02 16 16 C 0.06 1.17 4.57 71.98 0.33 1.50 16 17 C -0.11 -1.85 3.95 -10.26 -0.04 -1.89 16 18 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 19 C -0.17 -2.34 7.47 31.12 0.23 -2.11 16 20 C 0.08 0.95 5.27 31.12 0.16 1.12 16 21 H 0.09 0.68 8.14 -2.38 -0.02 0.67 16 22 O -0.57 -8.08 13.59 -148.98 -2.03 -10.10 16 23 C -0.12 -1.51 7.47 31.12 0.23 -1.28 16 24 C -0.21 -6.69 8.99 22.23 0.20 -6.49 16 25 C -0.05 -2.10 9.41 22.42 0.21 -1.89 16 26 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 27 H 0.11 5.34 7.65 -2.91 -0.02 5.31 16 28 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.07 1.30 7.64 -2.39 -0.02 1.28 16 30 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.23 7.90 -2.39 -0.02 1.21 16 33 H 0.40 2.14 9.12 -74.06 -0.68 1.47 16 34 H 0.12 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.16 3.74 6.28 -2.91 -0.02 3.72 16 37 H 0.14 5.19 6.21 -2.91 -0.02 5.17 16 Total: -1.00 -78.95 316.97 2.36 -76.59 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.43 Total: 22.12 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 2.65 Total: -31.04 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.26 Total: -47.23 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -3.00 Total: -61.61 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -78.95 2.36 -76.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218431112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.184 kcal (2) G-P(sol) polarization free energy of solvation -78.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds