Wall clock time and date at job start Mon Mar 30 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30527 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48506 * 109.46846 * 239.99721 * 3 2 1 5 5 H 1.48503 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47244 * 119.99859 * 3 2 1 7 7 C 1.40344 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.41762 * 119.99994 * 0.02562 * 7 2 1 10 10 O 1.21822 * 119.99950 * 0.02562 * 9 7 2 11 11 C 1.47569 * 119.99820 * 179.97438 * 9 7 2 12 12 C 1.39951 * 120.09135 * 180.02562 * 11 9 7 13 13 C 1.37122 * 119.90444 * 180.02562 * 12 11 9 14 14 C 1.39166 * 120.09231 * 359.97438 * 13 12 11 15 15 O 1.35661 * 119.90355 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99751 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46727 * 180.02562 * 16 15 14 18 18 H 1.09006 * 112.85187 * 316.19274 * 17 16 15 19 19 C 1.53779 * 113.69268 * 87.46314 * 17 16 15 20 20 C 1.53784 * 87.08045 * 139.99100 * 19 17 16 21 21 H 1.08994 * 113.61477 * 89.11454 * 20 19 17 22 22 O 1.42895 * 113.61275 * 220.02177 * 20 19 17 23 23 C 1.53779 * 113.61005 * 185.00075 * 17 16 15 24 24 C 1.39161 * 120.19116 * 0.25485 * 14 13 12 25 25 C 1.37126 * 120.09126 * 359.48682 * 24 14 13 26 26 H 0.97002 * 120.00453 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.04883 * 359.97438 * 12 11 9 28 28 H 1.07996 * 119.95134 * 180.02562 * 13 12 11 29 29 H 1.08996 * 109.47338 * 60.00078 * 16 15 14 30 30 H 1.08996 * 109.46719 * 299.99673 * 16 15 14 31 31 H 1.09002 * 113.61557 * 25.44212 * 19 17 16 32 32 H 1.09004 * 113.61501 * 254.53633 * 19 17 16 33 33 H 0.96703 * 114.00032 * 277.49449 * 22 20 19 34 34 H 1.08997 * 113.61646 * 105.38661 * 23 17 16 35 35 H 1.08998 * 113.69354 * 334.48969 * 23 17 16 36 36 H 1.08002 * 119.95504 * 179.72104 * 24 14 13 37 37 H 1.08001 * 120.04549 * 180.25961 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0930 1.6964 -1.2125 5 1 1.2742 2.7465 -0.0006 6 1 3.0929 1.6965 1.2125 7 6 2.0070 -1.2154 0.0005 8 1 3.0870 -1.2153 0.0010 9 6 1.2982 -2.4431 0.0005 10 8 0.0800 -2.4431 -0.0004 11 6 2.0361 -3.7211 0.0005 12 6 1.3384 -4.9342 0.0000 13 6 2.0279 -6.1194 0.0005 14 6 3.4195 -6.1171 0.0011 15 8 4.0979 -7.2919 0.0021 16 6 5.5250 -7.2171 0.0032 17 6 6.1098 -8.6309 0.0036 18 1 5.6011 -9.2992 0.6986 19 6 6.2894 -9.2258 -1.4030 20 6 7.6225 -9.8059 -0.9018 21 1 7.5275 -10.7952 -0.4544 22 8 8.6775 -9.7288 -1.8625 23 6 7.6422 -8.6636 0.1276 24 6 4.1173 -4.9131 0.0064 25 6 3.4356 -3.7233 0.0006 26 1 -0.4851 0.8400 -0.0004 27 1 0.2583 -4.9369 0.0000 28 1 1.4902 -7.0560 -0.0003 29 1 5.8602 -6.6845 0.8932 30 1 5.8615 -6.6854 -0.8868 31 1 6.4063 -8.4738 -2.1834 32 1 5.5492 -9.9858 -1.6535 33 1 8.6704 -10.4446 -2.5127 34 1 7.9941 -8.9697 1.1127 35 1 8.1302 -7.7584 -0.2338 36 1 5.1973 -4.9157 0.0114 37 1 3.9779 -2.7893 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218435174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:05 Heat of formation + Delta-G solvation = -88.837708 kcal Electronic energy + Delta-G solvation = -20061.394135 eV Core-core repulsion = 16769.516317 eV Total energy + Delta-G solvation = -3291.877817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13553 -39.19188 -37.45055 -35.79839 -35.19317 -32.68779 -30.76560 -29.61131 -28.31855 -26.49246 -26.06388 -23.26998 -22.50227 -21.46603 -19.86418 -19.56748 -17.86046 -17.79904 -16.63712 -15.99591 -15.74922 -15.52500 -15.34004 -14.43836 -14.22635 -13.85820 -13.74064 -13.03646 -12.86077 -12.78484 -12.67856 -12.49755 -11.92872 -11.86991 -11.68826 -11.49187 -11.24700 -11.20489 -10.99657 -10.69813 -10.56281 -10.36611 -10.28646 -10.09901 -9.92769 -8.97216 -8.44528 -7.48139 -7.45114 -6.30505 -4.90956 1.85683 2.03121 3.06411 3.11819 3.13695 3.27225 3.90734 4.00025 4.04014 4.19464 4.25415 4.51711 4.54630 4.65645 5.00363 5.06070 5.23795 5.34365 5.39534 5.43474 5.45059 5.50043 5.64135 5.79802 5.81814 5.90718 6.04642 6.10240 6.15065 6.33749 6.64980 6.85303 7.05957 7.24404 7.28607 7.36321 7.39577 7.85162 8.02562 8.78637 8.84260 10.31207 10.53305 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003105 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.544294 B = 9016.882739 C = 9702.363273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.080 3.920 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.389 3.611 10 O -0.544 6.544 11 C -0.137 4.137 12 C -0.057 4.057 13 C -0.163 4.163 14 C 0.111 3.889 15 O -0.318 6.318 16 C 0.073 3.927 17 C -0.108 4.108 18 H 0.103 0.897 19 C -0.162 4.162 20 C 0.075 3.925 21 H 0.083 0.917 22 O -0.561 6.561 23 C -0.120 4.120 24 C -0.221 4.221 25 C -0.057 4.057 26 H 0.275 0.725 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.378 0.622 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.454 -15.844 -0.959 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.091 0.909 9 C 0.285 3.715 10 O -0.434 6.434 11 C -0.138 4.138 12 C -0.075 4.075 13 C -0.181 4.181 14 C 0.067 3.933 15 O -0.233 6.233 16 C -0.003 4.003 17 C -0.126 4.126 18 H 0.122 0.878 19 C -0.200 4.200 20 C 0.016 3.984 21 H 0.101 0.899 22 O -0.366 6.366 23 C -0.158 4.158 24 C -0.239 4.239 25 C -0.075 4.075 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.771 -15.456 -0.612 20.710 hybrid contribution 0.629 0.422 -0.294 0.812 sum 14.400 -15.034 -0.907 20.837 Atomic orbital electron populations 1.69947 1.07546 1.28200 1.30731 1.26007 0.94643 1.00991 0.92737 0.86437 0.80111 0.80582 0.79849 1.18899 1.20254 1.18897 1.20901 0.94862 0.91688 1.47468 0.90888 1.18058 0.88428 0.85851 0.79119 1.90500 1.15048 1.88555 1.49280 1.21816 0.94059 0.97833 1.00135 1.21109 1.00463 0.90775 0.95141 1.20177 0.90561 0.98780 1.08627 1.19123 0.91659 0.84051 0.98487 1.85928 1.19181 1.28963 1.89214 1.22671 0.79316 0.96764 1.01516 1.22304 0.95360 0.96282 0.98663 0.87840 1.23760 0.97683 1.01353 0.97216 1.23331 0.86574 0.98080 0.90424 0.89936 1.86528 1.51743 1.53636 1.44711 1.23060 0.94600 0.99250 0.98841 1.21027 0.99364 0.92519 1.11028 1.21239 0.94176 0.97106 0.94987 0.91429 0.85055 0.86104 0.91936 0.91966 0.89031 0.90900 0.77491 0.90341 0.88815 0.86390 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.27 11.73 55.57 0.65 -20.62 16 2 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 3 Si 0.91 19.25 29.56 -169.99 -5.03 14.22 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.52 -14.28 8.86 -37.44 -0.33 -14.62 16 8 H 0.07 1.81 6.01 -52.48 -0.32 1.50 16 9 C 0.39 11.14 6.91 -34.43 -0.24 10.90 16 10 O -0.54 -17.44 14.89 5.08 0.08 -17.37 16 11 C -0.14 -3.27 5.89 -104.81 -0.62 -3.89 16 12 C -0.06 -1.22 9.57 -39.35 -0.38 -1.60 16 13 C -0.16 -3.02 9.95 -39.64 -0.39 -3.42 16 14 C 0.11 1.96 6.70 -38.89 -0.26 1.70 16 15 O -0.32 -4.85 10.12 -18.69 -0.19 -5.04 16 16 C 0.07 0.85 4.58 37.16 0.17 1.02 16 17 C -0.11 -0.98 4.01 -89.81 -0.36 -1.34 16 18 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 19 C -0.16 -1.39 7.47 -25.92 -0.19 -1.58 16 20 C 0.07 0.56 5.21 -25.91 -0.14 0.43 16 21 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 22 O -0.56 -4.62 13.67 -35.23 -0.48 -5.10 16 23 C -0.12 -0.96 7.47 -25.92 -0.19 -1.15 16 24 C -0.22 -3.87 8.99 -39.64 -0.36 -4.23 16 25 C -0.06 -1.16 9.41 -39.35 -0.37 -1.53 16 26 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 27 H 0.13 2.87 7.65 -52.48 -0.40 2.47 16 28 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.06 0.69 7.64 -51.93 -0.40 0.29 16 30 H 0.06 0.71 7.37 -51.93 -0.38 0.33 16 31 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.38 1.48 9.12 45.56 0.42 1.89 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.12 1.71 6.28 -52.49 -0.33 1.38 16 37 H 0.13 2.56 6.19 -52.49 -0.33 2.24 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -34.03 316.98 -7.76 -41.79 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.81 Total: 4.61 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -3.75 Total: -17.27 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.65 Total: -20.62 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.60 Total: -27.51 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.03 -7.76 -41.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218435174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.052 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds