Wall clock time and date at job start Mon Mar 30 2020 01:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30527 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48506 * 109.46846 * 239.99721 * 3 2 1 5 5 H 1.48503 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47244 * 119.99859 * 3 2 1 7 7 C 1.40344 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.41762 * 119.99994 * 0.02562 * 7 2 1 10 10 O 1.21822 * 119.99950 * 0.02562 * 9 7 2 11 11 C 1.47569 * 119.99820 * 179.97438 * 9 7 2 12 12 C 1.39951 * 120.09135 * 180.02562 * 11 9 7 13 13 C 1.37122 * 119.90444 * 180.02562 * 12 11 9 14 14 C 1.39166 * 120.09231 * 359.97438 * 13 12 11 15 15 O 1.35661 * 119.90355 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99751 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46727 * 180.02562 * 16 15 14 18 18 H 1.09006 * 112.85187 * 316.19274 * 17 16 15 19 19 C 1.53779 * 113.69268 * 87.46314 * 17 16 15 20 20 C 1.53784 * 87.08045 * 139.99100 * 19 17 16 21 21 H 1.08994 * 113.61477 * 89.11454 * 20 19 17 22 22 O 1.42895 * 113.61275 * 220.02177 * 20 19 17 23 23 C 1.53779 * 113.61005 * 185.00075 * 17 16 15 24 24 C 1.39161 * 120.19116 * 0.25485 * 14 13 12 25 25 C 1.37126 * 120.09126 * 359.48682 * 24 14 13 26 26 H 0.97002 * 120.00453 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.04883 * 359.97438 * 12 11 9 28 28 H 1.07996 * 119.95134 * 180.02562 * 13 12 11 29 29 H 1.08996 * 109.47338 * 60.00078 * 16 15 14 30 30 H 1.08996 * 109.46719 * 299.99673 * 16 15 14 31 31 H 1.09002 * 113.61557 * 25.44212 * 19 17 16 32 32 H 1.09004 * 113.61501 * 254.53633 * 19 17 16 33 33 H 0.96703 * 114.00032 * 277.49449 * 22 20 19 34 34 H 1.08997 * 113.61646 * 105.38661 * 23 17 16 35 35 H 1.08998 * 113.69354 * 334.48969 * 23 17 16 36 36 H 1.08002 * 119.95504 * 179.72104 * 24 14 13 37 37 H 1.08001 * 120.04549 * 180.25961 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0930 1.6964 -1.2125 5 1 1.2742 2.7465 -0.0006 6 1 3.0929 1.6965 1.2125 7 6 2.0070 -1.2154 0.0005 8 1 3.0870 -1.2153 0.0010 9 6 1.2982 -2.4431 0.0005 10 8 0.0800 -2.4431 -0.0004 11 6 2.0361 -3.7211 0.0005 12 6 1.3384 -4.9342 0.0000 13 6 2.0279 -6.1194 0.0005 14 6 3.4195 -6.1171 0.0011 15 8 4.0979 -7.2919 0.0021 16 6 5.5250 -7.2171 0.0032 17 6 6.1098 -8.6309 0.0036 18 1 5.6011 -9.2992 0.6986 19 6 6.2894 -9.2258 -1.4030 20 6 7.6225 -9.8059 -0.9018 21 1 7.5275 -10.7952 -0.4544 22 8 8.6775 -9.7288 -1.8625 23 6 7.6422 -8.6636 0.1276 24 6 4.1173 -4.9131 0.0064 25 6 3.4356 -3.7233 0.0006 26 1 -0.4851 0.8400 -0.0004 27 1 0.2583 -4.9369 0.0000 28 1 1.4902 -7.0560 -0.0003 29 1 5.8602 -6.6845 0.8932 30 1 5.8615 -6.6854 -0.8868 31 1 6.4063 -8.4738 -2.1834 32 1 5.5492 -9.9858 -1.6535 33 1 8.6704 -10.4446 -2.5127 34 1 7.9941 -8.9697 1.1127 35 1 8.1302 -7.7584 -0.2338 36 1 5.1973 -4.9157 0.0114 37 1 3.9779 -2.7893 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218435174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:04 Heat of formation + Delta-G solvation = -112.621716 kcal Electronic energy + Delta-G solvation = -20062.425487 eV Core-core repulsion = 16769.516317 eV Total energy + Delta-G solvation = -3292.909169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25280 -40.19239 -39.09492 -37.47873 -35.94506 -34.78887 -32.31402 -31.18470 -29.53337 -28.30546 -26.68549 -24.47321 -24.03866 -22.75876 -21.35165 -20.53538 -19.12177 -18.61561 -18.46452 -17.50979 -16.91823 -16.78444 -16.23325 -15.96191 -15.45566 -15.38682 -14.80975 -14.63890 -14.38393 -14.31467 -14.00583 -13.41893 -13.36195 -13.19925 -13.13042 -12.73095 -12.57779 -12.47378 -12.32392 -12.08599 -12.08438 -11.64925 -11.54764 -11.14631 -10.97934 -10.69974 -9.98835 -9.62435 -9.03713 -8.34611 -7.08097 0.21626 0.48263 1.37979 1.40647 1.53666 2.15168 2.20856 2.20983 2.85509 3.34668 3.51755 3.61722 3.74330 3.84406 3.88810 3.97050 3.99193 4.25520 4.29570 4.34076 4.40174 4.52813 4.57044 4.72100 4.79294 4.81011 4.84364 5.03299 5.09063 5.17775 5.19550 5.31776 5.42290 5.45579 5.73974 5.81380 5.96593 6.47577 6.69182 6.79970 6.92322 8.24829 8.48891 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003105 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.544294 B = 9016.882739 C = 9702.363273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.021 3.979 3 Si 0.997 3.003 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.544 4.544 8 H 0.096 0.904 9 C 0.364 3.636 10 O -0.601 6.601 11 C -0.181 4.181 12 C -0.067 4.067 13 C -0.162 4.162 14 C 0.130 3.870 15 O -0.318 6.318 16 C 0.062 3.938 17 C -0.106 4.106 18 H 0.110 0.890 19 C -0.166 4.166 20 C 0.080 3.920 21 H 0.104 0.896 22 O -0.580 6.580 23 C -0.119 4.119 24 C -0.211 4.211 25 C -0.054 4.054 26 H 0.282 0.718 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.395 0.605 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.898 -16.747 -0.794 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.575 4.575 8 H 0.114 0.886 9 C 0.265 3.735 10 O -0.496 6.496 11 C -0.183 4.183 12 C -0.085 4.085 13 C -0.180 4.180 14 C 0.084 3.916 15 O -0.232 6.232 16 C -0.013 4.013 17 C -0.124 4.124 18 H 0.128 0.872 19 C -0.203 4.203 20 C 0.021 3.979 21 H 0.122 0.878 22 O -0.389 6.389 23 C -0.157 4.157 24 C -0.229 4.229 25 C -0.072 4.072 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.164 0.836 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.251 -16.401 -0.457 23.808 hybrid contribution -0.348 0.502 -0.368 0.713 sum 16.903 -15.899 -0.825 23.220 Atomic orbital electron populations 1.70105 1.10065 1.29961 1.31659 1.27325 0.95521 1.05718 0.91189 0.85080 0.78500 0.74188 0.80726 1.17414 1.19457 1.17366 1.21438 0.96191 0.92249 1.47591 0.88591 1.18803 0.88203 0.88460 0.78068 1.90437 1.17227 1.89834 1.52097 1.21470 0.95599 0.96426 1.04775 1.21009 0.99837 0.91542 0.96145 1.20308 0.91478 0.98413 1.07844 1.19183 0.91505 0.85037 0.95865 1.85960 1.21367 1.27512 1.88345 1.23051 0.77037 0.98921 1.02289 1.22322 0.96048 0.94822 0.99210 0.87164 1.23767 0.98719 1.01262 0.96595 1.23362 0.85625 0.98851 0.90046 0.87845 1.86480 1.51910 1.55005 1.45467 1.23069 0.93411 0.99326 0.99868 1.21304 1.01139 0.91178 1.09285 1.21269 0.92647 0.98718 0.94609 0.90731 0.86892 0.83639 0.90753 0.91500 0.90265 0.90514 0.75485 0.88904 0.89534 0.82596 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.53 11.73 21.89 0.26 -47.27 16 2 C 0.02 1.17 5.50 85.40 0.47 1.64 16 3 Si 1.00 39.39 29.56 68.60 2.03 41.42 16 4 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 7 C -0.54 -30.84 8.86 23.65 0.21 -30.63 16 8 H 0.10 4.77 6.01 -2.91 -0.02 4.75 16 9 C 0.36 21.99 6.91 25.61 0.18 22.17 16 10 O -0.60 -41.33 14.89 -4.74 -0.07 -41.40 16 11 C -0.18 -8.97 5.89 -19.99 -0.12 -9.09 16 12 C -0.07 -3.00 9.57 22.42 0.21 -2.78 16 13 C -0.16 -5.88 9.95 22.23 0.22 -5.65 16 14 C 0.13 4.26 6.70 22.71 0.15 4.42 16 15 O -0.32 -8.67 10.12 -89.77 -0.91 -9.58 16 16 C 0.06 1.22 4.58 71.98 0.33 1.55 16 17 C -0.11 -1.59 4.01 -10.27 -0.04 -1.63 16 18 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 19 C -0.17 -2.40 7.47 31.12 0.23 -2.17 16 20 C 0.08 0.96 5.21 31.12 0.16 1.12 16 21 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 22 O -0.58 -8.07 13.67 -148.98 -2.04 -10.11 16 23 C -0.12 -1.53 7.47 31.12 0.23 -1.30 16 24 C -0.21 -6.86 8.99 22.23 0.20 -6.66 16 25 C -0.05 -2.19 9.41 22.42 0.21 -1.98 16 26 H 0.28 15.18 8.29 -92.71 -0.77 14.41 16 27 H 0.11 5.34 7.65 -2.91 -0.02 5.32 16 28 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.07 1.34 7.64 -2.39 -0.02 1.32 16 30 H 0.07 1.30 7.37 -2.39 -0.02 1.28 16 31 H 0.08 1.35 7.90 -2.39 -0.02 1.33 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.40 2.12 9.12 -74.06 -0.68 1.45 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.16 3.86 6.28 -2.91 -0.02 3.84 16 37 H 0.14 5.23 6.19 -2.91 -0.02 5.21 16 Total: -1.00 -78.04 316.98 2.35 -75.69 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.43 Total: 22.24 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 2.65 Total: -31.00 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.26 Total: -47.27 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -3.02 Total: -61.08 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -78.04 2.35 -75.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218435174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.931 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds