Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47141 * 239.99993 * 3 2 1 5 5 H 1.48509 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47250 * 119.99792 * 3 2 1 7 7 C 1.37874 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47428 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47428 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.47408 * 179.97438 * 13 12 11 15 15 C 1.42900 * 114.00163 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.01014 * 331.38576 * 15 14 13 17 17 C 1.53878 * 110.02687 * 92.80989 * 15 14 13 18 18 C 1.54159 * 108.70185 * 166.47078 * 17 15 14 19 19 S 1.82920 * 105.08823 * 332.09231 * 18 17 15 20 20 O 1.42103 * 109.35097 * 115.52458 * 19 18 17 21 21 O 1.42104 * 109.35329 * 248.59000 * 19 18 17 22 22 C 1.55045 * 110.02702 * 210.00478 * 15 14 13 23 23 H 0.97004 * 120.00003 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47278 * 59.99902 * 9 7 2 25 25 H 1.08996 * 109.47173 * 300.00167 * 9 7 2 26 26 H 1.09001 * 109.46852 * 59.99973 * 10 9 7 27 27 H 1.08996 * 109.47503 * 300.00297 * 10 9 7 28 28 H 1.09001 * 109.47322 * 60.00121 * 11 10 9 29 29 H 1.09010 * 109.47460 * 300.00229 * 11 10 9 30 30 H 1.08996 * 109.47546 * 59.99868 * 12 11 10 31 31 H 1.09009 * 109.46832 * 299.99781 * 12 11 10 32 32 H 1.09010 * 109.47098 * 59.99573 * 13 12 11 33 33 H 1.08996 * 109.47513 * 299.99922 * 13 12 11 34 34 H 1.09005 * 109.64521 * 46.62037 * 17 15 14 35 35 H 1.08996 * 109.64754 * 286.32426 * 17 15 14 36 36 H 1.09010 * 110.31795 * 213.18865 * 18 17 15 37 37 H 1.08996 * 110.32170 * 90.99780 * 18 17 15 38 38 H 1.08999 * 110.79230 * 80.00264 * 22 15 14 39 39 H 1.09004 * 110.95511 * 316.61623 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0015 11 6 1.4802 -4.9870 0.0020 12 6 2.4744 -6.1500 0.0024 13 6 1.7094 -7.4750 0.0023 14 8 2.6380 -8.5612 0.0020 15 6 2.0234 -9.8513 0.0025 16 1 1.0515 -9.8013 0.4934 17 6 1.8602 -10.3578 -1.4413 18 6 1.5208 -11.8610 -1.4025 19 16 2.2803 -12.4808 0.1419 20 8 1.2584 -12.9251 1.0238 21 8 3.3627 -13.3438 -0.1790 22 6 2.9342 -10.8731 0.7307 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5562 0.8919 26 1 2.8725 -3.6039 0.8909 27 1 2.8712 -3.6047 -0.8890 28 1 0.8532 -5.0450 -0.8877 29 1 0.8538 -5.0447 0.8923 30 1 3.1011 -6.0920 0.8923 31 1 3.1010 -6.0926 -0.8878 32 1 1.0829 -7.5328 -0.8879 33 1 1.0825 -7.5327 0.8920 34 1 2.7896 -10.2060 -1.9903 35 1 1.0539 -9.8126 -1.9320 36 1 1.9508 -12.3686 -2.2660 37 1 0.4406 -12.0047 -1.3772 38 1 2.8277 -10.7846 1.8119 39 1 3.9757 -10.7473 0.4346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224369587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = -144.964495 kcal Electronic energy + Delta-G solvation = -18731.893187 eV Core-core repulsion = 15573.025481 eV Total energy + Delta-G solvation = -3158.867706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.07472 -37.49362 -36.49779 -35.89975 -34.66942 -32.81832 -30.69687 -29.82509 -26.52068 -25.35759 -23.52135 -21.89581 -21.08729 -20.09098 -19.31168 -17.69558 -17.35289 -16.27442 -16.20832 -16.10769 -15.83335 -15.12257 -14.84992 -14.49032 -14.42435 -13.89151 -13.30942 -12.87072 -12.67273 -12.60557 -12.58459 -12.46728 -12.22708 -11.89598 -11.61740 -11.54681 -11.25803 -11.12502 -10.97961 -10.90261 -10.52567 -10.50442 -10.44263 -9.87120 -9.67185 -9.28750 -9.04522 -8.34825 -6.00173 -4.02478 -0.47409 1.98406 3.08390 3.19227 3.32805 3.37044 3.39705 3.59779 3.84711 4.06915 4.21897 4.31008 4.34083 4.45853 4.86909 4.97412 5.04358 5.07809 5.15553 5.29402 5.35399 5.35834 5.42684 5.62121 5.63404 5.98120 6.19824 6.33670 6.43348 6.76381 6.86555 6.91100 7.14451 7.67586 7.82815 8.00348 8.43449 9.04792 9.61541 11.11165 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.066641 B = 0.002184 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.058019 B =12819.782024 C =12907.419502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.055 3.945 14 O -0.364 6.364 15 C 0.092 3.908 16 H 0.087 0.913 17 C -0.141 4.141 18 C -0.590 4.590 19 S 2.396 3.604 20 O -0.934 6.934 21 O -0.934 6.934 22 C -0.591 4.591 23 H 0.261 0.739 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -25.027 -1.992 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.021 4.021 14 O -0.283 6.283 15 C 0.032 3.968 16 H 0.105 0.895 17 C -0.180 4.180 18 C -0.719 4.719 19 S 2.578 3.422 20 O -0.931 6.931 21 O -0.931 6.931 22 C -0.720 4.720 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.783 -25.793 -1.600 25.992 hybrid contribution 0.087 1.768 -0.387 1.812 sum 2.870 -24.025 -1.986 24.277 Atomic orbital electron populations 1.69955 1.06063 1.26677 1.50942 1.25036 0.94861 0.99269 0.95378 0.86658 0.79581 0.83130 0.78621 1.20249 1.21299 1.20246 1.21249 0.93014 0.91198 1.50483 0.92778 1.19104 0.94052 0.91448 0.97098 1.21613 0.99066 0.93705 1.00338 1.21598 0.97709 0.94416 1.01659 1.21613 0.99123 0.91556 1.03174 1.22858 0.92160 0.86593 1.00486 1.88003 1.33336 1.12268 1.94714 1.22586 0.95575 0.85184 0.93434 0.89527 1.22440 1.05449 0.91749 0.98365 1.30438 1.13827 1.06147 1.21502 1.08868 0.76626 0.77989 0.78745 1.93642 1.57507 1.79223 1.62747 1.93634 1.53703 1.61924 1.83884 1.30891 1.11448 1.18499 1.11151 0.92974 0.96717 0.96698 0.93377 0.93392 0.92362 0.92345 0.91289 0.91306 0.92926 0.92814 0.88536 0.88569 0.84022 0.84306 0.83917 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.12 -1.83 5.21 -26.73 -0.14 -1.97 16 12 C -0.12 -1.51 5.58 -26.73 -0.15 -1.66 16 13 C 0.06 0.58 5.78 37.16 0.21 0.80 16 14 O -0.36 -3.72 10.06 -35.23 -0.35 -4.08 16 15 C 0.09 0.65 3.05 -25.19 -0.08 0.57 16 16 H 0.09 0.49 7.80 -51.93 -0.41 0.08 16 17 C -0.14 -0.75 6.08 -25.67 -0.16 -0.90 16 18 C -0.59 -2.34 7.26 37.76 0.27 -2.07 16 19 S 2.40 15.22 6.10 -107.50 -0.66 14.56 16 20 O -0.93 -9.22 18.15 -57.73 -1.05 -10.26 16 21 O -0.93 -9.28 18.15 -57.73 -1.05 -10.33 16 22 C -0.59 -3.45 7.00 38.24 0.27 -3.19 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.14 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -36.11 335.34 -9.50 -45.60 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -6.71 Total: -6.88 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -0.45 Total: -24.04 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -2.45 Total: -24.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 15.22 SS G_CDS: -0.66 Total: 14.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.11 -9.50 -45.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224369587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.361 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds