Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47141 * 239.99993 * 3 2 1 5 5 H 1.48509 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47250 * 119.99792 * 3 2 1 7 7 C 1.37874 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47428 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47428 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.47408 * 179.97438 * 13 12 11 15 15 C 1.42900 * 114.00163 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.01014 * 331.38576 * 15 14 13 17 17 C 1.53878 * 110.02687 * 92.80989 * 15 14 13 18 18 C 1.54159 * 108.70185 * 166.47078 * 17 15 14 19 19 S 1.82920 * 105.08823 * 332.09231 * 18 17 15 20 20 O 1.42103 * 109.35097 * 115.52458 * 19 18 17 21 21 O 1.42104 * 109.35329 * 248.59000 * 19 18 17 22 22 C 1.55045 * 110.02702 * 210.00478 * 15 14 13 23 23 H 0.97004 * 120.00003 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47278 * 59.99902 * 9 7 2 25 25 H 1.08996 * 109.47173 * 300.00167 * 9 7 2 26 26 H 1.09001 * 109.46852 * 59.99973 * 10 9 7 27 27 H 1.08996 * 109.47503 * 300.00297 * 10 9 7 28 28 H 1.09001 * 109.47322 * 60.00121 * 11 10 9 29 29 H 1.09010 * 109.47460 * 300.00229 * 11 10 9 30 30 H 1.08996 * 109.47546 * 59.99868 * 12 11 10 31 31 H 1.09009 * 109.46832 * 299.99781 * 12 11 10 32 32 H 1.09010 * 109.47098 * 59.99573 * 13 12 11 33 33 H 1.08996 * 109.47513 * 299.99922 * 13 12 11 34 34 H 1.09005 * 109.64521 * 46.62037 * 17 15 14 35 35 H 1.08996 * 109.64754 * 286.32426 * 17 15 14 36 36 H 1.09010 * 110.31795 * 213.18865 * 18 17 15 37 37 H 1.08996 * 110.32170 * 90.99780 * 18 17 15 38 38 H 1.08999 * 110.79230 * 80.00264 * 22 15 14 39 39 H 1.09004 * 110.95511 * 316.61623 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0015 11 6 1.4802 -4.9870 0.0020 12 6 2.4744 -6.1500 0.0024 13 6 1.7094 -7.4750 0.0023 14 8 2.6380 -8.5612 0.0020 15 6 2.0234 -9.8513 0.0025 16 1 1.0515 -9.8013 0.4934 17 6 1.8602 -10.3578 -1.4413 18 6 1.5208 -11.8610 -1.4025 19 16 2.2803 -12.4808 0.1419 20 8 1.2584 -12.9251 1.0238 21 8 3.3627 -13.3438 -0.1790 22 6 2.9342 -10.8731 0.7307 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5562 0.8919 26 1 2.8725 -3.6039 0.8909 27 1 2.8712 -3.6047 -0.8890 28 1 0.8532 -5.0450 -0.8877 29 1 0.8538 -5.0447 0.8923 30 1 3.1011 -6.0920 0.8923 31 1 3.1010 -6.0926 -0.8878 32 1 1.0829 -7.5328 -0.8879 33 1 1.0825 -7.5327 0.8920 34 1 2.7896 -10.2060 -1.9903 35 1 1.0539 -9.8126 -1.9320 36 1 1.9508 -12.3686 -2.2660 37 1 0.4406 -12.0047 -1.3772 38 1 2.8277 -10.7846 1.8119 39 1 3.9757 -10.7473 0.4346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224369587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = -170.593100 kcal Electronic energy + Delta-G solvation = -18733.004526 eV Core-core repulsion = 15573.025481 eV Total energy + Delta-G solvation = -3159.979046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72236 -38.13340 -37.19347 -37.04343 -35.67987 -34.59923 -32.04200 -30.56580 -28.10693 -25.86419 -25.09704 -22.48709 -22.33389 -21.65903 -19.84663 -18.48275 -18.22105 -17.85948 -16.98192 -16.79576 -16.57495 -16.52291 -15.83002 -15.64715 -15.11472 -14.71647 -14.49994 -14.10752 -13.82002 -13.59981 -13.28121 -13.21499 -13.15491 -13.02183 -12.95989 -12.71798 -12.53858 -12.34775 -12.07243 -11.97393 -11.78159 -11.70432 -11.42511 -11.32180 -11.29834 -10.96412 -10.55317 -10.53274 -8.19914 -6.31028 -0.97027 1.39853 1.42848 1.50790 1.51420 2.40853 2.54011 2.64124 3.08365 3.12870 3.38176 3.61145 3.75288 3.86708 3.99255 4.05606 4.16296 4.34531 4.43153 4.46521 4.53944 4.67487 4.75687 4.83689 4.87614 4.90555 4.98764 5.06879 5.11685 5.31639 5.33192 5.41557 5.56697 5.79749 5.88060 6.17520 6.27065 6.86535 7.38231 8.91598 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.066641 B = 0.002184 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.058019 B =12819.782024 C =12907.419502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.058 3.942 14 O -0.381 6.381 15 C 0.079 3.921 16 H 0.101 0.899 17 C -0.143 4.143 18 C -0.565 4.565 19 S 2.407 3.593 20 O -0.974 6.974 21 O -0.975 6.975 22 C -0.586 4.586 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.009 1.009 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -25.176 -2.742 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.019 4.019 14 O -0.300 6.300 15 C 0.020 3.980 16 H 0.119 0.881 17 C -0.182 4.182 18 C -0.697 4.697 19 S 2.593 3.407 20 O -0.971 6.971 21 O -0.973 6.973 22 C -0.716 4.716 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.299 -25.982 -2.327 26.294 hybrid contribution -0.093 1.835 -0.176 1.846 sum 3.206 -24.147 -2.503 24.487 Atomic orbital electron populations 1.70087 1.07775 1.27825 1.51726 1.26001 0.95812 1.03408 0.94775 0.85511 0.78295 0.78107 0.79198 1.19134 1.20783 1.19220 1.21732 0.93548 0.92662 1.50493 0.92341 1.19045 0.94564 0.93240 0.94743 1.21449 0.98009 0.93923 1.00413 1.21441 0.97910 0.93301 1.01879 1.21439 0.98392 0.91920 1.03028 1.22732 0.91848 0.85626 1.01655 1.87954 1.33867 1.13217 1.94979 1.22887 0.96255 0.83952 0.94928 0.88085 1.22476 1.06202 0.92267 0.97242 1.30289 1.14818 1.05133 1.19495 1.08336 0.75486 0.77690 0.79160 1.93586 1.58330 1.80398 1.64773 1.93578 1.55221 1.63855 1.84602 1.30829 1.11636 1.17446 1.11684 0.92765 0.98993 0.99107 0.93343 0.93171 0.92028 0.92313 0.91661 0.91284 0.91443 0.92051 0.88230 0.87358 0.82114 0.82337 0.83258 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -4.01 5.15 30.59 0.16 -3.86 16 11 C -0.11 -3.29 5.21 30.59 0.16 -3.14 16 12 C -0.11 -2.66 5.58 30.59 0.17 -2.49 16 13 C 0.06 1.08 5.78 71.98 0.42 1.49 16 14 O -0.38 -6.92 10.06 -148.98 -1.50 -8.42 16 15 C 0.08 0.92 3.05 31.59 0.10 1.02 16 16 H 0.10 0.88 7.80 -2.39 -0.02 0.86 16 17 C -0.14 -1.08 6.08 31.28 0.19 -0.89 16 18 C -0.57 -2.89 7.26 72.37 0.53 -2.36 16 19 S 2.41 28.45 6.10 -56.49 -0.34 28.10 16 20 O -0.97 -18.88 18.15 -127.47 -2.31 -21.20 16 21 O -0.98 -19.22 18.15 -127.47 -2.31 -21.53 16 22 C -0.59 -6.07 7.00 72.68 0.51 -5.56 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.65 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.16 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.16 0.30 8.14 -2.39 -0.02 0.29 16 38 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -77.97 335.34 -0.09 -78.06 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.00 Total: 0.72 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.07 Total: -45.31 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -6.12 Total: -51.15 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 28.45 SS G_CDS: -0.34 Total: 28.10 kcal Total: -77.97 -0.09 -78.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224369587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.536 kcal (2) G-P(sol) polarization free energy of solvation -77.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds