Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47239 * 269.99877 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00005 * 3 2 1 6 6 H 1.48506 * 109.47220 * 150.00109 * 3 2 1 7 7 C 1.38636 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00151 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99481 * 0.02562 * 7 2 1 10 10 C 1.42900 * 116.99291 * 179.97438 * 9 7 2 11 11 C 1.53788 * 113.61414 * 209.99564 * 10 9 7 12 12 C 1.53774 * 87.08154 * 220.02105 * 11 10 9 13 13 C 1.50700 * 113.61219 * 139.98309 * 12 11 10 14 14 O 1.20826 * 120.00162 * 0.27394 * 13 12 11 15 15 O 1.34234 * 120.00068 * 179.97438 * 13 12 11 16 16 C 1.45196 * 116.99938 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47396 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.99552 * 269.72822 * 17 16 15 19 19 C 1.38234 * 119.99784 * 179.76272 * 18 17 16 20 20 C 1.38237 * 119.99733 * 0.50289 * 19 18 17 21 21 C 1.38233 * 120.00370 * 359.74887 * 20 19 18 22 22 C 1.38229 * 120.00313 * 89.99381 * 17 16 15 23 23 C 1.53778 * 87.08599 * 25.43493 * 12 11 10 24 24 H 0.97001 * 120.00202 * 0.02562 * 1 2 3 25 25 H 1.09004 * 112.85534 * 341.19352 * 10 9 7 26 26 H 1.09006 * 113.61056 * 105.46882 * 11 10 9 27 27 H 1.09001 * 113.61195 * 334.57106 * 11 10 9 28 28 H 1.09003 * 113.61894 * 270.79622 * 12 11 10 29 29 H 1.09012 * 109.47257 * 300.00032 * 16 15 13 30 30 H 1.08996 * 109.47465 * 60.00089 * 16 15 13 31 31 H 1.08001 * 120.00133 * 359.97438 * 18 17 16 32 32 H 1.07995 * 120.00144 * 180.22961 * 19 18 17 33 33 H 1.08005 * 119.99365 * 179.72267 * 20 19 18 34 34 H 1.07997 * 120.00018 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.00093 * 0.02562 * 22 17 16 36 36 H 1.08996 * 113.61733 * 89.10891 * 23 12 11 37 37 H 1.09003 * 113.61487 * 220.02254 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0001 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5675 0.0005 11 6 1.4247 -4.7489 -0.7039 12 6 1.9748 -5.6391 0.4228 13 6 1.0002 -6.6875 0.8941 14 8 -0.0931 -6.7681 0.3859 15 8 1.3488 -7.5358 1.8743 16 6 0.3601 -8.5199 2.2769 17 6 0.9248 -9.3770 3.3804 18 6 1.6088 -10.5381 3.0722 19 6 2.1311 -11.3218 4.0841 20 6 1.9603 -10.9498 5.4045 21 6 1.2718 -9.7915 5.7128 22 6 0.7541 -9.0051 4.7007 23 6 1.9958 -4.3779 1.3024 24 1 -0.4850 0.8400 -0.0004 25 1 3.1406 -3.4047 -0.3233 26 1 1.8435 -4.9765 -1.6843 27 1 0.3370 -4.6783 -0.7131 28 1 2.9649 -6.0448 0.2149 29 1 -0.5348 -8.0106 2.6349 30 1 0.1039 -9.1478 1.4236 31 1 1.7381 -10.8312 2.0408 32 1 2.6687 -12.2270 3.8433 33 1 2.3646 -11.5645 6.1952 34 1 1.1381 -9.5012 6.7444 35 1 0.2156 -8.1004 4.9416 36 1 1.0643 -4.2060 1.8415 37 1 2.8757 -4.3061 1.9417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = -94.304812 kcal Electronic energy + Delta-G solvation = -20055.711881 eV Core-core repulsion = 16763.596992 eV Total energy + Delta-G solvation = -3292.114889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.90798 -40.26436 -39.56322 -37.61521 -36.66429 -33.65911 -33.16451 -31.85375 -28.58680 -27.12504 -26.69613 -26.09758 -23.54329 -22.62103 -22.14597 -20.56649 -19.78747 -18.89479 -18.22286 -17.57992 -17.50736 -16.77559 -16.41822 -16.03829 -15.90851 -15.63921 -14.81142 -14.77272 -14.35205 -14.12217 -13.99075 -13.93524 -13.49322 -13.47367 -13.30401 -12.83302 -12.47769 -12.25571 -12.23191 -12.09519 -12.03318 -11.91593 -11.72184 -11.36256 -11.23394 -11.08793 -10.09416 -9.87726 -9.84582 -8.15369 -5.84855 0.17320 0.44863 1.06347 1.41638 1.48465 1.57474 1.69239 2.36026 2.86517 3.16295 3.35575 3.47949 3.62496 3.74223 3.76648 3.98455 4.00582 4.12673 4.19412 4.24777 4.26913 4.35344 4.50708 4.58149 4.68223 4.76430 4.80312 4.98090 4.98633 5.10343 5.11762 5.20814 5.28367 5.40206 5.50301 5.56278 5.57306 6.03382 6.23245 6.65578 7.27635 8.10132 9.09793 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.002921 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.795814 B = 9584.131399 C = 9921.633030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.049 4.049 3 Si 1.007 2.993 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.374 4.374 8 H 0.082 0.918 9 O -0.322 6.322 10 C 0.059 3.941 11 C -0.119 4.119 12 C -0.089 4.089 13 C 0.478 3.522 14 O -0.538 6.538 15 O -0.349 6.349 16 C 0.102 3.898 17 C -0.114 4.114 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.112 4.112 21 C -0.129 4.129 22 C -0.112 4.112 23 C -0.133 4.133 24 H 0.259 0.741 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.165 0.835 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -22.956 9.187 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.241 4.241 3 Si 0.829 3.171 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.453 4.453 8 H 0.100 0.900 9 O -0.237 6.237 10 C 0.000 4.000 11 C -0.157 4.157 12 C -0.108 4.108 13 C 0.323 3.677 14 O -0.427 6.427 15 O -0.266 6.266 16 C 0.029 3.971 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.130 4.130 23 C -0.171 4.171 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.182 0.818 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.143 -22.928 9.064 25.669 hybrid contribution -0.294 0.845 -0.123 0.903 sum 6.849 -22.084 8.941 24.790 Atomic orbital electron populations 1.70222 1.07798 1.27140 1.53849 1.26291 0.96709 1.02306 0.98811 0.84737 0.77699 0.76121 0.78571 1.19636 1.20868 1.17840 1.21513 0.91092 0.83404 1.49256 0.90047 1.85675 1.33873 1.11980 1.92162 1.23617 0.95663 0.85295 0.95395 1.23194 1.01149 0.93230 0.98119 1.22321 0.99739 0.90228 0.98469 1.23871 0.87378 0.80265 0.76193 1.90648 1.24651 1.70867 1.56547 1.86591 1.46070 1.42933 1.50976 1.21949 0.89840 0.88562 0.96715 1.19554 1.02174 0.96222 0.93434 1.21319 0.96229 0.94016 1.00812 1.21503 0.99732 1.00532 0.92675 1.21629 0.97416 0.96555 0.97367 1.21467 0.98059 0.95233 0.99948 1.21306 0.99520 0.99849 0.92370 1.23424 1.02892 0.92628 0.98200 0.93229 0.88962 0.88415 0.91575 0.81763 0.90985 0.89734 0.84770 0.83262 0.83199 0.83812 0.85820 0.92069 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.58 13.67 21.61 0.30 -61.29 16 2 C -0.05 -2.90 5.49 84.83 0.47 -2.43 16 3 Si 1.01 45.17 29.55 68.60 2.03 47.19 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.37 -21.91 9.85 67.91 0.67 -21.24 16 8 H 0.08 4.31 7.59 -2.91 -0.02 4.29 16 9 O -0.32 -18.82 9.79 -81.99 -0.80 -19.62 16 10 C 0.06 2.50 4.36 31.13 0.14 2.64 16 11 C -0.12 -4.41 7.23 31.12 0.23 -4.18 16 12 C -0.09 -2.66 4.26 -11.02 -0.05 -2.71 16 13 C 0.48 15.52 7.48 71.24 0.53 16.05 16 14 O -0.54 -20.88 15.65 21.96 0.34 -20.54 16 15 O -0.35 -9.90 10.20 -51.46 -0.53 -10.43 16 16 C 0.10 2.50 5.59 71.24 0.40 2.90 16 17 C -0.11 -2.39 5.52 -19.87 -0.11 -2.50 16 18 C -0.11 -1.83 9.70 22.27 0.22 -1.62 16 19 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 20 C -0.11 -1.46 10.05 22.27 0.22 -1.23 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.11 -2.20 9.70 22.27 0.22 -1.99 16 23 C -0.13 -4.79 7.46 31.12 0.23 -4.56 16 24 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.09 3.48 7.80 -2.38 -0.02 3.46 16 26 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 27 H 0.07 2.92 7.44 -2.39 -0.02 2.90 16 28 H 0.16 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.07 1.83 8.08 -2.38 -0.02 1.81 16 30 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 31 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.06 2.54 8.09 -2.39 -0.02 2.52 16 37 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -77.94 327.10 6.00 -71.94 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.06 Total: 16.90 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.61 Total: -24.16 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.30 Total: -61.29 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.98 Total: -50.59 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.94 6.00 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.365 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds