Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48502 * 109.47185 * 239.99710 * 3 2 1 5 5 H 1.48496 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47331 * 120.00254 * 3 2 1 7 7 C 1.38640 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99627 * 180.02562 * 7 2 1 9 9 O 1.34930 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.42898 * 116.99770 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85002 * 18.80639 * 10 9 7 12 12 C 1.53785 * 113.61334 * 149.99784 * 10 9 7 13 13 C 1.53781 * 87.07878 * 140.06585 * 12 10 9 14 14 H 1.08996 * 113.61423 * 89.20757 * 13 12 10 15 15 C 1.50706 * 113.61083 * 220.01993 * 13 12 10 16 16 O 1.20822 * 120.00226 * 0.02562 * 15 13 12 17 17 O 1.34230 * 119.99763 * 180.02562 * 15 13 12 18 18 C 1.45198 * 117.00173 * 180.02562 * 17 15 13 19 19 C 1.50693 * 109.47402 * 179.97438 * 18 17 15 20 20 C 1.38236 * 120.00479 * 269.73067 * 19 18 17 21 21 C 1.38238 * 119.99914 * 179.76436 * 20 19 18 22 22 C 1.38225 * 120.00104 * 0.50587 * 21 20 19 23 23 C 1.38235 * 120.00275 * 359.74742 * 22 21 20 24 24 C 1.38237 * 119.99793 * 359.97438 * 23 22 21 25 25 C 1.53775 * 87.08212 * 334.56829 * 13 12 10 26 26 H 0.96992 * 119.99815 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.61224 * 25.51897 * 12 10 9 28 28 H 1.08996 * 113.61709 * 254.61892 * 12 10 9 29 29 H 1.09003 * 109.47123 * 300.00357 * 18 17 15 30 30 H 1.09003 * 109.46718 * 60.00123 * 18 17 15 31 31 H 1.08002 * 119.99542 * 359.97438 * 20 19 18 32 32 H 1.08004 * 119.99471 * 180.22977 * 21 20 19 33 33 H 1.08002 * 120.00380 * 179.72195 * 22 21 20 34 34 H 1.08001 * 120.00560 * 179.97438 * 23 22 21 35 35 H 1.08005 * 119.99893 * 179.97438 * 24 23 22 36 36 H 1.09007 * 113.61519 * 139.98052 * 25 13 12 37 37 H 1.08996 * 113.61809 * 270.88411 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3344 -2.3692 0.0005 10 6 2.1127 -3.5676 0.0005 11 1 3.1407 -3.4047 0.3244 12 6 1.4248 -4.7489 0.7051 13 6 1.9767 -5.6396 -0.4204 14 1 2.9668 -6.0444 -0.2111 15 6 1.0032 -6.6889 -0.8920 16 8 -0.0925 -6.7663 -0.3888 17 8 1.3535 -7.5376 -1.8712 18 6 0.3655 -8.5220 -2.2752 19 6 0.9321 -9.3795 -3.3772 20 6 0.7588 -9.0111 -4.6983 21 6 1.2828 -9.7953 -5.7089 22 6 1.9711 -10.9532 -5.3990 23 6 2.1400 -11.3244 -4.0781 24 6 1.6209 -10.5372 -3.0672 25 6 1.9979 -4.3789 -1.3007 26 1 -0.4849 0.8400 -0.0004 27 1 0.3370 -4.6791 0.7131 28 1 1.8425 -4.9755 1.6860 29 1 0.1079 -9.1495 -1.4220 30 1 -0.5287 -8.0128 -2.6348 31 1 0.2168 -8.1089 -4.9406 32 1 1.1505 -9.5055 -6.7409 33 1 2.3767 -11.5682 -6.1887 34 1 2.6774 -12.2293 -3.8359 35 1 1.7525 -10.8275 -2.0352 36 1 2.8784 -4.3070 -1.9392 37 1 1.0669 -4.2080 -1.8411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224389427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = -73.891557 kcal Electronic energy + Delta-G solvation = -20054.668877 eV Core-core repulsion = 16763.439174 eV Total energy + Delta-G solvation = -3291.229704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61606 -39.43160 -38.11439 -36.26186 -34.80159 -32.39136 -31.46599 -31.19683 -27.42006 -25.64186 -25.19080 -24.22998 -22.87914 -21.66057 -20.92989 -19.04781 -17.92647 -17.44533 -17.21182 -16.45055 -16.26200 -15.43815 -15.21334 -14.81263 -14.70851 -13.99402 -13.71526 -13.51220 -13.27017 -13.09420 -12.67849 -12.55240 -12.13563 -11.89522 -11.59937 -11.40179 -11.37572 -11.01313 -10.86245 -10.65239 -10.61439 -10.55560 -10.25782 -9.84188 -9.41187 -9.20848 -9.18206 -9.11318 -7.97667 -5.94972 -3.59442 0.90897 1.11586 2.39060 2.79332 3.31972 3.33819 3.37214 3.60429 4.31082 4.41594 4.52282 4.70009 4.77847 4.82763 4.93900 4.98775 5.09628 5.20745 5.24873 5.30834 5.35748 5.42000 5.63754 5.66029 5.74537 5.87637 6.02102 6.13300 6.20652 6.27027 6.28745 6.29149 6.48153 6.53875 6.67843 6.77767 6.91412 7.46146 7.93811 8.42523 9.47650 10.15194 11.25508 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.002920 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.468610 B = 9585.756059 C = 9922.276743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.023 3.977 3 Si 0.925 3.075 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.366 4.366 8 H 0.064 0.936 9 O -0.272 6.272 10 C 0.082 3.918 11 H 0.072 0.928 12 C -0.119 4.119 13 C -0.113 4.113 14 H 0.119 0.881 15 C 0.475 3.525 16 O -0.505 6.505 17 O -0.352 6.352 18 C 0.105 3.895 19 C -0.094 4.094 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.096 4.096 25 C -0.139 4.139 26 H 0.259 0.741 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.040 -21.605 -8.341 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.446 4.446 8 H 0.082 0.918 9 O -0.185 6.185 10 C 0.022 3.978 11 H 0.090 0.910 12 C -0.157 4.157 13 C -0.132 4.132 14 H 0.137 0.863 15 C 0.319 3.681 16 O -0.392 6.392 17 O -0.270 6.270 18 C 0.031 3.969 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.114 4.114 25 C -0.177 4.177 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.335 -21.528 -8.201 23.442 hybrid contribution 0.571 0.610 -0.082 0.840 sum 4.906 -20.918 -8.283 23.027 Atomic orbital electron populations 1.70013 1.05430 1.26118 1.51460 1.24976 0.95661 0.97810 0.99096 0.86043 0.78541 0.81775 0.78398 1.20366 1.20892 1.20344 1.20887 0.90167 0.82755 1.50744 0.91785 1.85736 1.31026 1.10236 1.91537 1.23106 0.94938 0.86984 0.92795 0.91026 1.23301 1.03240 0.93396 0.95766 1.22379 0.98156 0.91379 1.01252 0.86271 1.23806 0.87982 0.80107 0.76242 1.90652 1.23193 1.69881 1.55466 1.86609 1.45455 1.42894 1.51999 1.21774 0.90367 0.88931 0.95815 1.19567 1.00483 0.95575 0.93736 1.21159 0.98791 0.99267 0.92037 1.21178 0.98395 0.95173 0.99369 1.21231 0.98460 0.96816 0.96583 1.21154 1.00284 0.99975 0.92860 1.21106 0.96367 0.94291 0.99682 1.23601 1.03133 0.92012 0.98992 0.93095 0.88079 0.90987 0.90402 0.90258 0.85592 0.85695 0.85921 0.85791 0.85790 0.90925 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.01 13.68 55.48 0.76 -27.25 16 2 C 0.02 0.68 5.49 -17.51 -0.10 0.58 16 3 Si 0.93 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.37 -10.65 9.85 30.88 0.30 -10.35 16 8 H 0.06 1.72 7.59 -52.49 -0.40 1.32 16 9 O -0.27 -7.73 9.79 -16.51 -0.16 -7.89 16 10 C 0.08 1.75 4.36 -25.92 -0.11 1.64 16 11 H 0.07 1.41 7.80 -51.93 -0.41 1.01 16 12 C -0.12 -2.22 7.24 -25.92 -0.19 -2.40 16 13 C -0.11 -1.78 4.26 -90.96 -0.39 -2.17 16 14 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.48 7.81 7.48 36.01 0.27 8.08 16 16 O -0.51 -9.60 15.65 -18.75 -0.29 -9.90 16 17 O -0.35 -5.13 10.20 -39.26 -0.40 -5.53 16 18 C 0.10 1.27 5.59 36.00 0.20 1.47 16 19 C -0.09 -1.01 5.52 -104.63 -0.58 -1.59 16 20 C -0.09 -0.95 9.70 -39.58 -0.38 -1.33 16 21 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 22 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 25 C -0.14 -2.54 7.46 -25.92 -0.19 -2.74 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.10 2.13 7.43 -51.93 -0.39 1.75 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -34.64 327.10 -7.90 -42.54 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.97 Total: 0.40 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.74 Total: -14.26 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 0.76 Total: -27.25 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.86 Total: -23.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.64 -7.90 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224389427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.350 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds