Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48502 * 109.47185 * 239.99710 * 3 2 1 5 5 H 1.48496 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47331 * 120.00254 * 3 2 1 7 7 C 1.38640 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99627 * 180.02562 * 7 2 1 9 9 O 1.34930 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.42898 * 116.99770 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85002 * 18.80639 * 10 9 7 12 12 C 1.53785 * 113.61334 * 149.99784 * 10 9 7 13 13 C 1.53781 * 87.07878 * 140.06585 * 12 10 9 14 14 H 1.08996 * 113.61423 * 89.20757 * 13 12 10 15 15 C 1.50706 * 113.61083 * 220.01993 * 13 12 10 16 16 O 1.20822 * 120.00226 * 0.02562 * 15 13 12 17 17 O 1.34230 * 119.99763 * 180.02562 * 15 13 12 18 18 C 1.45198 * 117.00173 * 180.02562 * 17 15 13 19 19 C 1.50693 * 109.47402 * 179.97438 * 18 17 15 20 20 C 1.38236 * 120.00479 * 269.73067 * 19 18 17 21 21 C 1.38238 * 119.99914 * 179.76436 * 20 19 18 22 22 C 1.38225 * 120.00104 * 0.50587 * 21 20 19 23 23 C 1.38235 * 120.00275 * 359.74742 * 22 21 20 24 24 C 1.38237 * 119.99793 * 359.97438 * 23 22 21 25 25 C 1.53775 * 87.08212 * 334.56829 * 13 12 10 26 26 H 0.96992 * 119.99815 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.61224 * 25.51897 * 12 10 9 28 28 H 1.08996 * 113.61709 * 254.61892 * 12 10 9 29 29 H 1.09003 * 109.47123 * 300.00357 * 18 17 15 30 30 H 1.09003 * 109.46718 * 60.00123 * 18 17 15 31 31 H 1.08002 * 119.99542 * 359.97438 * 20 19 18 32 32 H 1.08004 * 119.99471 * 180.22977 * 21 20 19 33 33 H 1.08002 * 120.00380 * 179.72195 * 22 21 20 34 34 H 1.08001 * 120.00560 * 179.97438 * 23 22 21 35 35 H 1.08005 * 119.99893 * 179.97438 * 24 23 22 36 36 H 1.09007 * 113.61519 * 139.98052 * 25 13 12 37 37 H 1.08996 * 113.61809 * 270.88411 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3344 -2.3692 0.0005 10 6 2.1127 -3.5676 0.0005 11 1 3.1407 -3.4047 0.3244 12 6 1.4248 -4.7489 0.7051 13 6 1.9767 -5.6396 -0.4204 14 1 2.9668 -6.0444 -0.2111 15 6 1.0032 -6.6889 -0.8920 16 8 -0.0925 -6.7663 -0.3888 17 8 1.3535 -7.5376 -1.8712 18 6 0.3655 -8.5220 -2.2752 19 6 0.9321 -9.3795 -3.3772 20 6 0.7588 -9.0111 -4.6983 21 6 1.2828 -9.7953 -5.7089 22 6 1.9711 -10.9532 -5.3990 23 6 2.1400 -11.3244 -4.0781 24 6 1.6209 -10.5372 -3.0672 25 6 1.9979 -4.3789 -1.3007 26 1 -0.4849 0.8400 -0.0004 27 1 0.3370 -4.6791 0.7131 28 1 1.8425 -4.9755 1.6860 29 1 0.1079 -9.1495 -1.4220 30 1 -0.5287 -8.0128 -2.6348 31 1 0.2168 -8.1089 -4.9406 32 1 1.1505 -9.5055 -6.7409 33 1 2.3767 -11.5682 -6.1887 34 1 2.6774 -12.2293 -3.8359 35 1 1.7525 -10.8275 -2.0352 36 1 2.8784 -4.3070 -1.9392 37 1 1.0669 -4.2080 -1.8411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224389427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = -94.200891 kcal Electronic energy + Delta-G solvation = -20055.549556 eV Core-core repulsion = 16763.439174 eV Total energy + Delta-G solvation = -3292.110382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90927 -40.26468 -39.56302 -37.61562 -36.66385 -33.65881 -33.16546 -31.85336 -28.58701 -27.12391 -26.69748 -26.09631 -23.54330 -22.62077 -22.14592 -20.56629 -19.78642 -18.89463 -18.22268 -17.57989 -17.50675 -16.77436 -16.41808 -16.04112 -15.90836 -15.64405 -14.80985 -14.76916 -14.35199 -14.12105 -13.99413 -13.93193 -13.49138 -13.47531 -13.30352 -12.79919 -12.48226 -12.29225 -12.21860 -12.09535 -12.03040 -11.93282 -11.72229 -11.36211 -11.23802 -11.07761 -10.09217 -9.87723 -9.84614 -8.15143 -5.84723 0.17293 0.44849 1.06297 1.41592 1.49728 1.56520 1.69228 2.36262 2.86505 3.16336 3.35612 3.47924 3.62504 3.74275 3.76624 3.98418 4.00578 4.12638 4.19395 4.24755 4.26899 4.35321 4.50715 4.58140 4.68201 4.76400 4.80217 4.98081 4.98590 5.10316 5.11779 5.20707 5.28358 5.40135 5.50301 5.56267 5.57278 6.03370 6.23246 6.65598 7.27735 8.10218 9.09821 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.002920 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.468610 B = 9585.756059 C = 9922.276743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.048 4.048 3 Si 1.007 2.993 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.375 4.375 8 H 0.082 0.918 9 O -0.322 6.322 10 C 0.059 3.941 11 H 0.092 0.908 12 C -0.119 4.119 13 C -0.089 4.089 14 H 0.165 0.835 15 C 0.478 3.522 16 O -0.538 6.538 17 O -0.349 6.349 18 C 0.102 3.898 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.129 4.129 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.106 4.106 25 C -0.133 4.133 26 H 0.259 0.741 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -22.941 -9.151 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.241 4.241 3 Si 0.829 3.171 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.099 0.901 9 O -0.237 6.237 10 C 0.000 4.000 11 H 0.110 0.890 12 C -0.157 4.157 13 C -0.108 4.108 14 H 0.182 0.818 15 C 0.323 3.677 16 O -0.427 6.427 17 O -0.266 6.266 18 C 0.029 3.971 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.130 4.130 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.171 4.171 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.143 -22.909 -9.024 25.637 hybrid contribution -0.282 0.838 0.108 0.890 sum 6.861 -22.072 -8.915 24.773 Atomic orbital electron populations 1.70214 1.07798 1.27220 1.53764 1.26294 0.96706 1.02307 0.98774 0.84804 0.77140 0.75784 0.79412 1.18683 1.20937 1.18625 1.21480 0.91096 0.83418 1.49411 0.90054 1.85672 1.33857 1.11968 1.92171 1.23610 0.95664 0.85303 0.95393 0.88977 1.23193 1.01145 0.93223 0.98129 1.22320 0.99759 0.90198 0.98475 0.81771 1.23869 0.87407 0.80255 0.76176 1.90647 1.24484 1.70897 1.56681 1.86590 1.46072 1.42927 1.50981 1.21947 0.89851 0.88546 0.96719 1.19554 1.02126 0.96271 0.93436 1.21308 0.99511 0.99856 0.92372 1.21466 0.98025 0.95257 0.99960 1.21626 0.97436 0.96543 0.97357 1.21504 0.99762 1.00499 0.92678 1.21320 0.96226 0.94010 1.00816 1.23422 1.02891 0.92634 0.98201 0.93220 0.91570 0.88417 0.89730 0.90988 0.85818 0.83811 0.83199 0.83261 0.84771 0.88265 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.60 13.68 21.61 0.30 -61.30 16 2 C -0.05 -2.87 5.49 84.83 0.47 -2.41 16 3 Si 1.01 45.14 29.55 68.60 2.03 47.17 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.38 -22.01 9.85 67.92 0.67 -21.34 16 8 H 0.08 4.30 7.59 -2.91 -0.02 4.28 16 9 O -0.32 -18.82 9.79 -81.99 -0.80 -19.62 16 10 C 0.06 2.51 4.36 31.12 0.14 2.64 16 11 H 0.09 3.47 7.80 -2.39 -0.02 3.45 16 12 C -0.12 -4.41 7.24 31.12 0.23 -4.19 16 13 C -0.09 -2.66 4.26 -11.01 -0.05 -2.71 16 14 H 0.16 3.50 8.14 -2.39 -0.02 3.48 16 15 C 0.48 15.52 7.48 71.24 0.53 16.06 16 16 O -0.54 -20.89 15.65 21.98 0.34 -20.54 16 17 O -0.35 -9.91 10.20 -51.41 -0.52 -10.43 16 18 C 0.10 2.50 5.59 71.23 0.40 2.90 16 19 C -0.11 -2.39 5.52 -19.87 -0.11 -2.50 16 20 C -0.11 -2.20 9.70 22.27 0.22 -1.99 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.11 -1.46 10.05 22.27 0.22 -1.23 16 23 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 24 C -0.11 -1.84 9.70 22.27 0.22 -1.62 16 25 C -0.13 -4.79 7.46 31.12 0.23 -4.56 16 26 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.07 2.92 7.43 -2.39 -0.02 2.91 16 28 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 29 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 31 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.06 2.53 8.09 -2.39 -0.02 2.52 16 Total: -1.00 -77.94 327.10 6.00 -71.93 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.06 Total: 17.04 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.61 Total: -24.23 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.30 Total: -61.30 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.98 Total: -50.60 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -77.94 6.00 -71.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224389427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.266 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds