Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48497 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47116 * 299.99596 * 3 2 1 6 6 H 1.48494 * 109.47533 * 59.99581 * 3 2 1 7 7 C 1.39887 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00195 * 189.83838 * 7 2 1 9 9 C 1.41220 * 119.99894 * 9.84604 * 7 2 1 10 10 C 1.40830 * 120.17787 * 212.88926 * 9 7 2 11 11 C 1.36440 * 119.81051 * 179.97438 * 10 9 7 12 12 C 1.39313 * 120.18520 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81911 * 180.02562 * 12 11 10 14 14 C 1.42898 * 116.99881 * 354.79219 * 13 12 11 15 15 H 1.09002 * 110.37055 * 320.61992 * 14 13 12 16 16 C 1.54083 * 110.41717 * 82.97743 * 14 13 12 17 17 O 1.43559 * 107.21620 * 115.56298 * 16 14 13 18 18 C 1.44360 * 107.57087 * 26.85665 * 17 16 14 19 19 H 1.08997 * 113.01392 * 84.38252 * 18 17 16 20 20 O 1.43585 * 108.21548 * 210.25523 * 18 17 16 21 21 C 1.43126 * 110.31698 * 85.87759 * 20 18 17 22 22 C 1.54332 * 107.63192 * 1.56032 * 21 20 18 23 23 C 1.54294 * 110.41863 * 198.25782 * 14 13 12 24 24 H 1.08997 * 113.86267 * 98.13435 * 23 14 13 25 25 C 1.39312 * 120.36302 * 359.97438 * 12 11 10 26 26 C 1.36439 * 120.18785 * 359.97438 * 25 12 11 27 27 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.09558 * 359.96344 * 10 9 7 29 29 H 1.08002 * 119.90919 * 179.72791 * 11 10 9 30 30 H 1.08998 * 109.89251 * 234.96226 * 16 14 13 31 31 H 1.08998 * 109.89300 * 356.16325 * 16 14 13 32 32 H 1.09008 * 109.82690 * 121.08479 * 21 20 18 33 33 H 1.08998 * 109.82522 * 242.02963 * 21 20 18 34 34 H 1.08999 * 110.80260 * 139.60319 * 22 21 20 35 35 H 1.09002 * 110.80022 * 262.90075 * 22 21 20 36 36 H 1.08005 * 119.90976 * 180.02562 * 25 12 11 37 37 H 1.07999 * 120.09762 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0763 -1.2183 0.1603 9 6 1.3178 -2.4255 -0.2081 10 6 1.7525 -3.6053 0.4264 11 6 1.0795 -4.7740 0.2200 12 6 -0.0346 -4.8025 -0.6161 13 8 -0.6986 -5.9687 -0.8157 14 6 -0.1348 -7.1445 -0.2312 15 1 0.9514 -7.1293 -0.3208 16 6 -0.5505 -7.2619 1.2479 17 8 -1.3580 -8.4425 1.3699 18 6 -0.9608 -9.3524 0.3219 19 1 -0.0957 -9.9591 0.5896 20 8 -2.1041 -10.1390 -0.0467 21 6 -2.8854 -9.4504 -1.0285 22 6 -2.1681 -8.1221 -1.3492 23 6 -0.7125 -8.4087 -0.9011 24 1 -0.0695 -8.8317 -1.6729 25 6 -0.4711 -3.6400 -1.2474 26 6 0.1901 -2.4628 -1.0508 27 1 -0.4850 0.8401 -0.0004 28 1 2.6163 -3.5850 1.0743 29 1 1.4141 -5.6806 0.7022 30 1 0.3357 -7.3521 1.8761 31 1 -1.1282 -6.3855 1.5414 32 1 -2.9621 -10.0564 -1.9314 33 1 -3.8805 -9.2471 -0.6329 34 1 -2.2074 -7.9089 -2.4174 35 1 -2.5992 -7.3012 -0.7762 36 1 -1.3359 -3.6704 -1.8937 37 1 -0.1499 -1.5623 -1.5407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = -102.193112 kcal Electronic energy + Delta-G solvation = -21279.084336 eV Core-core repulsion = 17986.627385 eV Total energy + Delta-G solvation = -3292.456951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91261 -38.73413 -36.90321 -36.14326 -33.42170 -32.46113 -30.07812 -29.20059 -28.96575 -28.03653 -24.99598 -22.69431 -22.38111 -21.67585 -20.78334 -20.00826 -17.74365 -17.33455 -17.13825 -16.54212 -15.44091 -15.29307 -15.15145 -14.93806 -14.47631 -14.01502 -13.68699 -13.32896 -13.08937 -12.82353 -12.44427 -12.23700 -11.91285 -11.72623 -11.65633 -11.38455 -11.20749 -11.05398 -10.92330 -10.76458 -10.72324 -10.16520 -9.88864 -9.83659 -9.70500 -9.38071 -9.13555 -7.74501 -7.02211 -6.71285 -4.34426 2.70650 2.84713 3.07894 3.12594 3.13322 3.22155 3.70018 3.94934 4.14517 4.31785 4.47934 4.61308 4.71516 4.83422 5.05637 5.17866 5.19639 5.34007 5.54732 5.57051 5.61913 5.68659 5.89724 5.92450 5.97134 6.11534 6.18576 6.54402 6.63245 6.88961 6.97048 7.03403 7.15162 7.35349 7.48101 7.67414 7.95224 8.12307 8.33826 8.57880 8.86100 8.91035 10.25646 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.049723 B = 0.003670 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.985101 B = 7627.753161 C = 7868.953378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.189 4.189 11 C -0.171 4.171 12 C -0.007 4.007 13 O -0.308 6.308 14 C 0.068 3.932 15 H 0.083 0.917 16 C 0.031 3.969 17 O -0.385 6.385 18 C 0.233 3.767 19 H 0.129 0.871 20 O -0.367 6.367 21 C 0.051 3.949 22 C -0.132 4.132 23 C -0.147 4.147 24 H 0.116 0.884 25 C -0.121 4.121 26 C -0.122 4.122 27 H 0.279 0.721 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -12.472 -2.182 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.208 4.208 11 C -0.189 4.189 12 C -0.050 4.050 13 O -0.224 6.224 14 C 0.009 3.991 15 H 0.100 0.900 16 C -0.046 4.046 17 O -0.306 6.306 18 C 0.138 3.862 19 H 0.146 0.854 20 O -0.286 6.286 21 C -0.025 4.025 22 C -0.170 4.170 23 C -0.165 4.165 24 H 0.134 0.866 25 C -0.140 4.140 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.018 -12.554 -2.041 12.878 hybrid contribution 0.733 1.123 0.040 1.341 sum -1.286 -11.431 -2.001 11.676 Atomic orbital electron populations 1.69796 1.07313 1.28901 1.37683 1.25832 0.94830 1.01045 0.92516 0.86239 0.80720 0.81118 0.78465 1.18598 1.19859 1.20079 1.19462 0.95627 0.90376 1.44462 0.90578 1.17616 0.91979 0.92259 0.89300 1.20678 1.02750 0.93383 1.04038 1.20443 0.98014 0.98004 1.02481 1.18625 0.96755 0.84923 1.04705 1.85953 1.49996 1.13447 1.73011 1.23150 0.98428 0.85501 0.91984 0.89952 1.23825 0.95837 0.88702 0.96192 1.88819 1.61370 1.28021 1.52436 1.25131 0.87931 0.87358 0.85830 0.85378 1.88368 1.38818 1.42122 1.59329 1.23236 0.95252 0.92765 0.91277 1.22853 0.92865 0.97967 1.03266 1.24248 0.98865 0.94795 0.98631 0.86621 1.19840 1.00970 0.91079 1.02076 1.20953 0.98093 0.95573 0.99487 0.91065 0.88550 0.88766 0.91337 0.88150 0.90993 0.91210 0.89651 0.88875 0.88405 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.85 11.07 55.54 0.62 -20.23 16 2 C 0.07 1.82 5.24 -17.34 -0.09 1.73 16 3 Si 0.91 18.60 29.57 -169.99 -5.03 13.57 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.47 -12.20 9.03 -37.83 -0.34 -12.54 16 8 H 0.08 1.91 7.86 -52.49 -0.41 1.50 16 9 C 0.09 2.35 5.50 -106.80 -0.59 1.76 16 10 C -0.19 -4.44 9.74 -39.25 -0.38 -4.83 16 11 C -0.17 -3.61 8.64 -39.83 -0.34 -3.95 16 12 C -0.01 -0.15 6.63 -38.78 -0.26 -0.41 16 13 O -0.31 -5.72 8.20 -18.73 -0.15 -5.87 16 14 C 0.07 1.00 2.59 -25.49 -0.07 0.93 16 15 H 0.08 1.16 6.62 -51.93 -0.34 0.82 16 16 C 0.03 0.46 6.48 37.72 0.24 0.71 16 17 O -0.39 -5.93 11.04 -59.05 -0.65 -6.58 16 18 C 0.23 2.95 5.19 39.02 0.20 3.16 16 19 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 20 O -0.37 -5.01 11.19 -59.05 -0.66 -5.67 16 21 C 0.05 0.59 7.78 37.86 0.29 0.88 16 22 C -0.13 -1.66 5.52 -24.99 -0.14 -1.79 16 23 C -0.15 -1.81 4.38 -87.04 -0.38 -2.19 16 24 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 25 C -0.12 -2.78 9.92 -39.83 -0.40 -3.18 16 26 C -0.12 -3.07 8.58 -39.25 -0.34 -3.40 16 27 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.70 5.60 -52.49 -0.29 1.40 16 30 H 0.07 0.89 8.03 -51.93 -0.42 0.48 16 31 H 0.10 1.67 7.97 -51.93 -0.41 1.26 16 32 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 36 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 37 H 0.12 3.18 6.50 -52.49 -0.34 2.84 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -28.29 302.50 -8.59 -36.87 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.69 Total: 6.48 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.58 Total: -23.12 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.62 Total: -20.23 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -1.47 Total: -18.13 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.29 -8.59 -36.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.319 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds