Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48497 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47116 * 299.99596 * 3 2 1 6 6 H 1.48494 * 109.47533 * 59.99581 * 3 2 1 7 7 C 1.39887 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00195 * 189.83838 * 7 2 1 9 9 C 1.41220 * 119.99894 * 9.84604 * 7 2 1 10 10 C 1.40830 * 120.17787 * 212.88926 * 9 7 2 11 11 C 1.36440 * 119.81051 * 179.97438 * 10 9 7 12 12 C 1.39313 * 120.18520 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81911 * 180.02562 * 12 11 10 14 14 C 1.42898 * 116.99881 * 354.79219 * 13 12 11 15 15 H 1.09002 * 110.37055 * 320.61992 * 14 13 12 16 16 C 1.54083 * 110.41717 * 82.97743 * 14 13 12 17 17 O 1.43559 * 107.21620 * 115.56298 * 16 14 13 18 18 C 1.44360 * 107.57087 * 26.85665 * 17 16 14 19 19 H 1.08997 * 113.01392 * 84.38252 * 18 17 16 20 20 O 1.43585 * 108.21548 * 210.25523 * 18 17 16 21 21 C 1.43126 * 110.31698 * 85.87759 * 20 18 17 22 22 C 1.54332 * 107.63192 * 1.56032 * 21 20 18 23 23 C 1.54294 * 110.41863 * 198.25782 * 14 13 12 24 24 H 1.08997 * 113.86267 * 98.13435 * 23 14 13 25 25 C 1.39312 * 120.36302 * 359.97438 * 12 11 10 26 26 C 1.36439 * 120.18785 * 359.97438 * 25 12 11 27 27 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.09558 * 359.96344 * 10 9 7 29 29 H 1.08002 * 119.90919 * 179.72791 * 11 10 9 30 30 H 1.08998 * 109.89251 * 234.96226 * 16 14 13 31 31 H 1.08998 * 109.89300 * 356.16325 * 16 14 13 32 32 H 1.09008 * 109.82690 * 121.08479 * 21 20 18 33 33 H 1.08998 * 109.82522 * 242.02963 * 21 20 18 34 34 H 1.08999 * 110.80260 * 139.60319 * 22 21 20 35 35 H 1.09002 * 110.80022 * 262.90075 * 22 21 20 36 36 H 1.08005 * 119.90976 * 180.02562 * 25 12 11 37 37 H 1.07999 * 120.09762 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0763 -1.2183 0.1603 9 6 1.3178 -2.4255 -0.2081 10 6 1.7525 -3.6053 0.4264 11 6 1.0795 -4.7740 0.2200 12 6 -0.0346 -4.8025 -0.6161 13 8 -0.6986 -5.9687 -0.8157 14 6 -0.1348 -7.1445 -0.2312 15 1 0.9514 -7.1293 -0.3208 16 6 -0.5505 -7.2619 1.2479 17 8 -1.3580 -8.4425 1.3699 18 6 -0.9608 -9.3524 0.3219 19 1 -0.0957 -9.9591 0.5896 20 8 -2.1041 -10.1390 -0.0467 21 6 -2.8854 -9.4504 -1.0285 22 6 -2.1681 -8.1221 -1.3492 23 6 -0.7125 -8.4087 -0.9011 24 1 -0.0695 -8.8317 -1.6729 25 6 -0.4711 -3.6400 -1.2474 26 6 0.1901 -2.4628 -1.0508 27 1 -0.4850 0.8401 -0.0004 28 1 2.6163 -3.5850 1.0743 29 1 1.4141 -5.6806 0.7022 30 1 0.3357 -7.3521 1.8761 31 1 -1.1282 -6.3855 1.5414 32 1 -2.9621 -10.0564 -1.9314 33 1 -3.8805 -9.2471 -0.6329 34 1 -2.2074 -7.9089 -2.4174 35 1 -2.5992 -7.3012 -0.7762 36 1 -1.3359 -3.6704 -1.8937 37 1 -0.1499 -1.5623 -1.5407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = -118.339634 kcal Electronic energy + Delta-G solvation = -21279.784502 eV Core-core repulsion = 17986.627385 eV Total energy + Delta-G solvation = -3293.157117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03190 -40.26491 -38.32012 -37.48837 -35.19282 -33.62542 -31.75300 -30.89293 -30.25739 -29.12541 -26.80797 -24.01046 -23.40960 -23.08292 -22.44808 -21.38462 -19.28891 -18.76879 -18.50132 -17.70128 -17.03149 -16.54421 -16.32886 -16.14693 -15.81180 -15.70499 -14.91493 -14.86223 -14.55518 -14.15499 -13.97618 -13.86494 -13.48728 -13.21195 -12.89836 -12.76016 -12.53496 -12.47445 -12.37288 -12.19432 -11.88881 -11.63333 -11.59992 -11.20852 -11.00679 -10.88887 -10.74019 -9.57378 -8.83510 -8.54685 -6.27078 0.93354 1.00801 1.40457 1.49144 1.54601 2.22468 2.24638 2.38576 2.76219 3.09983 3.33086 3.44149 3.64108 3.71090 3.72558 4.06914 4.14355 4.15667 4.29309 4.35401 4.42310 4.52240 4.62047 4.74399 4.79571 4.88740 4.94362 5.05521 5.17111 5.21241 5.29785 5.53294 5.58333 5.64600 5.85117 5.98934 6.06948 6.25650 6.55390 6.78456 6.97442 7.06794 8.43890 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.049723 B = 0.003670 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.985101 B = 7627.753161 C = 7868.953378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.055 3.945 10 C -0.196 4.196 11 C -0.167 4.167 12 C 0.010 3.990 13 O -0.313 6.313 14 C 0.058 3.942 15 H 0.099 0.901 16 C 0.034 3.966 17 O -0.408 6.408 18 C 0.230 3.770 19 H 0.162 0.838 20 O -0.383 6.383 21 C 0.050 3.950 22 C -0.135 4.135 23 C -0.138 4.138 24 H 0.146 0.854 25 C -0.135 4.135 26 C -0.139 4.139 27 H 0.284 0.716 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -14.245 -2.396 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.216 4.216 11 C -0.185 4.185 12 C -0.034 4.034 13 O -0.228 6.228 14 C 0.001 3.999 15 H 0.117 0.883 16 C -0.042 4.042 17 O -0.330 6.330 18 C 0.135 3.865 19 H 0.178 0.822 20 O -0.302 6.302 21 C -0.025 4.025 22 C -0.172 4.172 23 C -0.157 4.157 24 H 0.164 0.836 25 C -0.154 4.154 26 C -0.159 4.159 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.142 -14.359 -2.257 14.580 hybrid contribution 0.353 1.442 0.107 1.489 sum -0.788 -12.917 -2.150 13.118 Atomic orbital electron populations 1.69869 1.08747 1.30028 1.38730 1.26661 0.95575 1.04238 0.91612 0.85155 0.79309 0.76526 0.78658 1.18171 1.19160 1.19477 1.19703 0.95775 0.91533 1.46454 0.90722 1.17947 0.92870 0.93408 0.90416 1.20916 1.03259 0.93530 1.03900 1.20735 0.97243 0.98620 1.01900 1.18663 0.96068 0.85621 1.03004 1.85968 1.50105 1.13584 1.73186 1.23496 0.99390 0.84758 0.92274 0.88338 1.23752 0.96059 0.87936 0.96493 1.88799 1.62134 1.28507 1.53554 1.25572 0.88450 0.87325 0.85149 0.82173 1.88358 1.39361 1.42626 1.59876 1.23345 0.94730 0.92525 0.91945 1.22826 0.93295 0.97590 1.03525 1.24377 0.98805 0.93289 0.99204 0.83591 1.19997 1.01354 0.91285 1.02740 1.20844 0.98921 0.95789 1.00325 0.90565 0.87489 0.85093 0.89132 0.90776 0.88261 0.91536 0.88421 0.91880 0.87268 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.94 11.07 21.82 0.24 -44.70 16 2 C 0.03 1.58 5.24 85.23 0.45 2.02 16 3 Si 0.98 38.66 29.57 68.60 2.03 40.69 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -26.99 9.03 23.40 0.21 -26.78 16 8 H 0.07 3.85 7.86 -2.91 -0.02 3.83 16 9 C 0.06 2.95 5.50 -21.28 -0.12 2.83 16 10 C -0.20 -9.20 9.74 22.48 0.22 -8.98 16 11 C -0.17 -6.76 8.64 22.11 0.19 -6.57 16 12 C 0.01 0.42 6.63 22.79 0.15 0.58 16 13 O -0.31 -11.09 8.20 -89.94 -0.74 -11.83 16 14 C 0.06 1.55 2.59 31.40 0.08 1.63 16 15 H 0.10 2.37 6.62 -2.39 -0.02 2.36 16 16 C 0.03 0.95 6.48 72.35 0.47 1.42 16 17 O -0.41 -11.79 11.04 -126.21 -1.39 -13.19 16 18 C 0.23 5.10 5.19 73.19 0.38 5.48 16 19 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 20 O -0.38 -9.42 11.19 -126.21 -1.41 -10.83 16 21 C 0.05 1.04 7.78 72.43 0.56 1.61 16 22 C -0.13 -3.10 5.52 31.72 0.18 -2.93 16 23 C -0.14 -2.94 4.38 -8.47 -0.04 -2.98 16 24 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 25 C -0.13 -6.29 9.92 22.11 0.22 -6.07 16 26 C -0.14 -7.26 8.58 22.48 0.19 -7.07 16 27 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 28 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.13 4.28 5.60 -2.91 -0.02 4.26 16 30 H 0.09 2.08 8.03 -2.39 -0.02 2.06 16 31 H 0.07 2.43 7.97 -2.39 -0.02 2.41 16 32 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.84 7.18 -2.39 -0.02 1.82 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.10 5.68 6.50 -2.91 -0.02 5.66 16 Total: -1.00 -62.51 302.50 2.95 -59.56 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 1.08 Total: 26.11 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 3.15 Total: -45.81 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.24 Total: -44.70 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -3.54 Total: -35.85 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -62.51 2.95 -59.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.777 kcal (2) G-P(sol) polarization free energy of solvation -62.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds