Wall clock time and date at job start Mon Mar 30 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33088 * 1 3 3 C 1.46949 * 119.99969 * 2 1 4 4 O 1.21532 * 120.00364 * 0.28000 * 3 2 1 5 5 O 1.34801 * 119.99857 * 180.02562 * 3 2 1 6 6 C 1.45193 * 117.00355 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47463 * 179.97438 * 6 5 3 8 8 H 1.08999 * 109.47040 * 185.00007 * 7 6 5 9 9 C 1.52995 * 109.47138 * 305.00178 * 7 6 5 10 10 O 1.42896 * 109.46753 * 65.00203 * 7 6 5 11 11 C 1.35680 * 117.00184 * 156.39745 * 10 7 6 12 12 C 1.39319 * 119.81356 * 4.96597 * 11 10 7 13 13 C 1.36436 * 120.18190 * 179.75946 * 12 11 10 14 14 C 1.40830 * 119.81115 * 0.52024 * 13 12 11 15 15 C 1.41218 * 120.17738 * 179.71895 * 14 13 12 16 16 H 1.08002 * 119.99606 * 206.51058 * 15 14 13 17 17 C 1.39884 * 120.00150 * 26.50524 * 15 14 13 18 18 N 1.30876 * 120.00312 * 13.19213 * 17 15 14 19 19 Si 1.86808 * 119.99991 * 193.19270 * 17 15 14 20 20 H 1.48494 * 109.47126 * 60.00222 * 19 17 15 21 21 H 1.48500 * 109.47035 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46747 * 300.00021 * 19 17 15 23 23 C 1.40831 * 119.64521 * 359.73965 * 14 13 12 24 24 C 1.36440 * 119.80976 * 359.97438 * 23 14 13 25 25 H 1.08001 * 120.00209 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99453 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99527 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47129 * 300.00428 * 6 5 3 29 29 H 1.09004 * 109.47103 * 59.99814 * 6 5 3 30 30 H 1.08998 * 109.47327 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47139 * 299.99966 * 9 7 6 32 32 H 1.08999 * 109.47295 * 59.99985 * 9 7 6 33 33 H 1.08002 * 119.90320 * 0.03254 * 12 11 10 34 34 H 1.07997 * 120.09071 * 180.25717 * 13 12 11 35 35 H 0.97000 * 120.00722 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.09934 * 180.02562 * 23 14 13 37 37 H 1.08000 * 119.91058 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0656 1.2726 0.0000 4 8 1.4580 2.3251 0.0051 5 8 3.4136 1.2726 -0.0005 6 6 4.0729 2.5662 0.0001 7 6 5.5897 2.3657 0.0000 8 1 6.0840 3.3330 0.0900 9 6 5.9868 1.4781 1.1812 10 8 5.9872 1.7395 -1.2213 11 6 7.2720 1.9221 -1.6176 12 6 8.1614 2.6048 -0.7907 13 6 9.4563 2.7885 -1.1795 14 6 9.8899 2.2954 -2.4253 15 6 11.2268 2.4863 -2.8380 16 1 11.4681 2.5155 -3.8903 17 6 12.2385 2.6378 -1.8840 18 7 12.0033 2.3494 -0.6292 19 14 13.9254 3.2519 -2.4008 20 1 13.7969 4.6023 -3.0049 21 1 14.8119 3.3234 -1.2115 22 1 14.5085 2.3174 -3.3968 23 6 8.9829 1.6111 -3.2575 24 6 7.6930 1.4307 -2.8513 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8708 -0.9354 -0.0004 28 1 3.7797 3.1239 -0.8893 29 1 3.7804 3.1227 0.8906 30 1 7.0674 1.3349 1.1809 31 1 5.6835 1.9558 2.1128 32 1 5.4925 0.5108 1.0911 33 1 7.8261 2.9859 0.1626 34 1 10.1456 3.3144 -0.5355 35 1 12.7049 2.4541 0.0324 36 1 9.3077 1.2295 -4.2142 37 1 6.9960 0.9066 -3.4883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:40 Heat of formation + Delta-G solvation = -86.048241 kcal Electronic energy + Delta-G solvation = -20370.966809 eV Core-core repulsion = 17079.209952 eV Total energy + Delta-G solvation = -3291.756857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41633 -39.02811 -36.98778 -36.16207 -33.47747 -33.32005 -31.96736 -29.65195 -28.93391 -27.11473 -24.94386 -24.21695 -22.00524 -21.01486 -20.06974 -19.80468 -18.15347 -17.37289 -17.09048 -16.43272 -16.27943 -15.33564 -14.74270 -14.53837 -14.16474 -13.98315 -13.50674 -13.31612 -13.14947 -12.60165 -12.57351 -12.16556 -12.02147 -11.72274 -11.54775 -11.44381 -11.09714 -10.95990 -10.90331 -10.67283 -10.60250 -10.48821 -10.22017 -9.86502 -9.78217 -9.33806 -9.04221 -7.64885 -6.97614 -6.68781 -4.26319 0.93157 2.65754 2.77985 2.84868 2.97115 3.07922 3.10954 3.21914 3.95706 3.97999 4.56862 4.64356 4.82848 4.85134 5.09681 5.17714 5.34417 5.40612 5.60846 5.68290 5.81217 5.87450 5.99458 6.09976 6.11433 6.28685 6.36588 6.51550 6.73131 6.89731 7.07634 7.29785 7.41892 7.56518 7.68724 7.91153 8.00798 8.16354 8.44850 8.65691 8.91460 8.99497 10.25455 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.049400 B = 0.003109 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.666852 B = 9003.533950 C = 9257.289978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.185 4.185 3 C 0.490 3.510 4 O -0.520 6.520 5 O -0.336 6.336 6 C 0.076 3.924 7 C 0.091 3.909 8 H 0.088 0.912 9 C -0.177 4.177 10 O -0.317 6.317 11 C -0.006 4.006 12 C -0.178 4.178 13 C -0.130 4.130 14 C 0.086 3.914 15 C -0.463 4.463 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.806 5.806 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.194 4.194 24 C -0.115 4.115 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.140 0.860 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.279 0.721 36 H 0.099 0.901 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.377 -2.410 4.298 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.204 4.204 3 C 0.336 3.664 4 O -0.411 6.411 5 O -0.252 6.252 6 C 0.003 3.997 7 C 0.033 3.967 8 H 0.105 0.895 9 C -0.234 4.234 10 O -0.233 6.233 11 C -0.049 4.049 12 C -0.197 4.197 13 C -0.149 4.149 14 C 0.083 3.917 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.433 5.433 19 Si 0.734 3.266 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.213 4.213 24 C -0.133 4.133 25 H 0.142 0.858 26 H 0.133 0.867 27 H 0.158 0.842 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.513 -2.200 4.433 15.333 hybrid contribution 0.993 0.438 0.070 1.088 sum -13.519 -1.762 4.504 14.358 Atomic orbital electron populations 1.24866 0.94893 1.03818 0.89127 1.22191 0.95312 0.95766 1.07161 1.21692 0.81553 0.90449 0.72736 1.90837 1.69650 1.34041 1.46542 1.86671 1.19956 1.35306 1.83222 1.23256 0.90985 0.82450 1.03040 1.22185 0.90980 0.97613 0.85903 0.89457 1.22300 1.03309 1.01131 0.96670 1.85937 1.27312 1.71560 1.38452 1.18594 0.82657 1.07457 0.96187 1.20664 0.95402 1.04719 0.98866 1.21019 0.93370 1.01833 0.98695 1.17606 0.92910 0.89542 0.91593 1.19439 0.91526 1.44201 0.94143 0.90635 1.25859 1.01034 0.92901 0.94522 1.69796 1.34969 1.36102 1.02430 0.86350 0.81024 0.80301 0.78885 1.18977 1.20450 1.19107 1.20619 0.93471 1.05830 1.01425 1.19614 0.96170 1.03534 0.94031 0.85779 0.86682 0.84172 0.90338 0.89771 0.91012 0.92165 0.91167 0.88487 0.85813 0.91023 0.88243 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 14.31 28.94 0.41 -0.21 16 2 C -0.19 -1.74 10.15 -37.85 -0.38 -2.12 16 3 C 0.49 6.54 7.91 34.26 0.27 6.81 16 4 O -0.52 -8.03 16.01 -19.29 -0.31 -8.34 16 5 O -0.34 -4.91 9.32 -43.55 -0.41 -5.32 16 6 C 0.08 1.09 5.34 37.16 0.20 1.28 16 7 C 0.09 1.46 2.64 -26.73 -0.07 1.39 16 8 H 0.09 1.36 6.36 -51.93 -0.33 1.03 16 9 C -0.18 -2.64 8.94 37.15 0.33 -2.30 16 10 O -0.32 -6.44 9.76 -22.31 -0.22 -6.66 16 11 C -0.01 -0.13 6.61 -38.78 -0.26 -0.39 16 12 C -0.18 -4.09 8.11 -39.83 -0.32 -4.41 16 13 C -0.13 -3.33 8.62 -39.25 -0.34 -3.67 16 14 C 0.09 2.28 5.57 -106.81 -0.59 1.68 16 15 C -0.46 -12.26 9.05 -37.83 -0.34 -12.60 16 16 H 0.08 1.92 7.88 -52.49 -0.41 1.50 16 17 C 0.07 1.82 5.22 -17.34 -0.09 1.73 16 18 N -0.81 -20.83 10.81 55.54 0.60 -20.23 16 19 Si 0.91 18.76 29.58 -169.99 -5.03 13.73 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.19 -4.77 9.74 -39.25 -0.38 -5.15 16 24 C -0.11 -2.67 9.92 -39.83 -0.40 -3.06 16 25 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 26 H 0.12 0.88 7.49 -52.48 -0.39 0.49 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.20 6.77 -51.93 -0.35 0.85 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.06 7.55 -51.93 -0.39 0.66 16 33 H 0.10 1.96 5.35 -52.49 -0.28 1.68 16 34 H 0.12 3.27 6.13 -52.49 -0.32 2.95 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -30.00 321.43 -7.06 -37.06 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.58 Total: 5.95 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.96 Total: -21.03 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.60 Total: -20.23 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.93 Total: -20.32 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.00 -7.06 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.989 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds