Wall clock time and date at job start Mon Mar 30 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33088 * 1 3 3 C 1.46949 * 119.99969 * 2 1 4 4 O 1.21532 * 120.00364 * 0.28000 * 3 2 1 5 5 O 1.34801 * 119.99857 * 180.02562 * 3 2 1 6 6 C 1.45193 * 117.00355 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47463 * 179.97438 * 6 5 3 8 8 H 1.08999 * 109.47040 * 185.00007 * 7 6 5 9 9 C 1.52995 * 109.47138 * 305.00178 * 7 6 5 10 10 O 1.42896 * 109.46753 * 65.00203 * 7 6 5 11 11 C 1.35680 * 117.00184 * 156.39745 * 10 7 6 12 12 C 1.39319 * 119.81356 * 4.96597 * 11 10 7 13 13 C 1.36436 * 120.18190 * 179.75946 * 12 11 10 14 14 C 1.40830 * 119.81115 * 0.52024 * 13 12 11 15 15 C 1.41218 * 120.17738 * 179.71895 * 14 13 12 16 16 H 1.08002 * 119.99606 * 206.51058 * 15 14 13 17 17 C 1.39884 * 120.00150 * 26.50524 * 15 14 13 18 18 N 1.30876 * 120.00312 * 13.19213 * 17 15 14 19 19 Si 1.86808 * 119.99991 * 193.19270 * 17 15 14 20 20 H 1.48494 * 109.47126 * 60.00222 * 19 17 15 21 21 H 1.48500 * 109.47035 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46747 * 300.00021 * 19 17 15 23 23 C 1.40831 * 119.64521 * 359.73965 * 14 13 12 24 24 C 1.36440 * 119.80976 * 359.97438 * 23 14 13 25 25 H 1.08001 * 120.00209 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99453 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99527 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47129 * 300.00428 * 6 5 3 29 29 H 1.09004 * 109.47103 * 59.99814 * 6 5 3 30 30 H 1.08998 * 109.47327 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47139 * 299.99966 * 9 7 6 32 32 H 1.08999 * 109.47295 * 59.99985 * 9 7 6 33 33 H 1.08002 * 119.90320 * 0.03254 * 12 11 10 34 34 H 1.07997 * 120.09071 * 180.25717 * 13 12 11 35 35 H 0.97000 * 120.00722 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.09934 * 180.02562 * 23 14 13 37 37 H 1.08000 * 119.91058 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0656 1.2726 0.0000 4 8 1.4580 2.3251 0.0051 5 8 3.4136 1.2726 -0.0005 6 6 4.0729 2.5662 0.0001 7 6 5.5897 2.3657 0.0000 8 1 6.0840 3.3330 0.0900 9 6 5.9868 1.4781 1.1812 10 8 5.9872 1.7395 -1.2213 11 6 7.2720 1.9221 -1.6176 12 6 8.1614 2.6048 -0.7907 13 6 9.4563 2.7885 -1.1795 14 6 9.8899 2.2954 -2.4253 15 6 11.2268 2.4863 -2.8380 16 1 11.4681 2.5155 -3.8903 17 6 12.2385 2.6378 -1.8840 18 7 12.0033 2.3494 -0.6292 19 14 13.9254 3.2519 -2.4008 20 1 13.7969 4.6023 -3.0049 21 1 14.8119 3.3234 -1.2115 22 1 14.5085 2.3174 -3.3968 23 6 8.9829 1.6111 -3.2575 24 6 7.6930 1.4307 -2.8513 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8708 -0.9354 -0.0004 28 1 3.7797 3.1239 -0.8893 29 1 3.7804 3.1227 0.8906 30 1 7.0674 1.3349 1.1809 31 1 5.6835 1.9558 2.1128 32 1 5.4925 0.5108 1.0911 33 1 7.8261 2.9859 0.1626 34 1 10.1456 3.3144 -0.5355 35 1 12.7049 2.4541 0.0324 36 1 9.3077 1.2295 -4.2142 37 1 6.9960 0.9066 -3.4883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:39 Heat of formation + Delta-G solvation = -101.725553 kcal Electronic energy + Delta-G solvation = -20371.646628 eV Core-core repulsion = 17079.209952 eV Total energy + Delta-G solvation = -3292.436676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50207 -40.64112 -38.51968 -37.50962 -35.27479 -34.09608 -33.32981 -31.51975 -30.79091 -28.26151 -26.76830 -25.18910 -23.57661 -22.85433 -21.39185 -20.90954 -19.31541 -19.14751 -18.55096 -17.65660 -17.41190 -16.94790 -16.20145 -15.99099 -15.75858 -15.19527 -14.80764 -14.63423 -14.38470 -14.29339 -13.91358 -13.73585 -13.45587 -13.22162 -12.97903 -12.82358 -12.74603 -12.52704 -12.37389 -12.10796 -11.79614 -11.64555 -11.59847 -11.49956 -11.16035 -10.88097 -10.87388 -9.54407 -8.86271 -8.55431 -6.22978 0.18104 0.94975 1.06453 1.40253 1.51036 1.54276 1.70467 1.98662 2.23984 2.50068 2.75763 3.59937 3.69274 3.73265 3.90638 4.12030 4.24377 4.25181 4.33871 4.41311 4.44483 4.67647 4.69581 4.85969 4.94751 5.04133 5.15957 5.16792 5.25917 5.33703 5.39948 5.45899 5.54974 5.68255 5.99281 6.08410 6.25408 6.57541 6.68553 6.80738 6.97397 7.11121 8.40467 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.049400 B = 0.003109 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.666852 B = 9003.533950 C = 9257.289978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.215 4.215 3 C 0.485 3.515 4 O -0.550 6.550 5 O -0.349 6.349 6 C 0.079 3.921 7 C 0.082 3.918 8 H 0.094 0.906 9 C -0.171 4.171 10 O -0.326 6.326 11 C 0.005 3.995 12 C -0.176 4.176 13 C -0.150 4.150 14 C 0.052 3.948 15 C -0.499 4.499 16 H 0.074 0.926 17 C 0.031 3.969 18 N -0.836 5.836 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.261 1.261 23 C -0.203 4.203 24 C -0.125 4.125 25 H 0.165 0.835 26 H 0.107 0.893 27 H 0.157 0.843 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.286 0.714 36 H 0.109 0.891 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.621 -2.887 4.871 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.234 4.234 3 C 0.333 3.667 4 O -0.444 6.444 5 O -0.265 6.265 6 C 0.005 3.995 7 C 0.026 3.974 8 H 0.112 0.888 9 C -0.228 4.228 10 O -0.242 6.242 11 C -0.039 4.039 12 C -0.194 4.194 13 C -0.170 4.170 14 C 0.050 3.950 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.182 4.182 18 N -0.464 5.464 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.194 1.194 22 H -0.186 1.186 23 C -0.222 4.222 24 C -0.144 4.144 25 H 0.182 0.818 26 H 0.125 0.875 27 H 0.175 0.825 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.781 -2.690 5.011 16.775 hybrid contribution 1.117 0.537 -0.055 1.241 sum -14.665 -2.152 4.956 15.628 Atomic orbital electron populations 1.25241 0.93983 1.05314 0.84679 1.22310 0.96037 0.94466 1.10590 1.22468 0.80960 0.91599 0.71640 1.90816 1.69818 1.35350 1.48380 1.86667 1.21006 1.35270 1.83511 1.23201 0.89561 0.82767 1.03933 1.22506 0.92427 0.97842 0.84616 0.88824 1.22246 1.01814 1.01167 0.97557 1.85933 1.25704 1.72011 1.40534 1.18692 0.83615 1.05813 0.95753 1.20857 0.94479 1.04227 0.99880 1.20998 0.94338 1.02916 0.98755 1.17963 0.93744 0.90684 0.92579 1.19693 0.92359 1.46310 0.94569 0.90737 1.26698 1.04762 0.92394 0.94302 1.69857 1.36489 1.36593 1.03434 0.85243 0.76011 0.79619 0.78746 1.18588 1.19356 1.18570 1.20805 0.93948 1.05732 1.01723 1.19888 0.96111 1.03598 0.94754 0.81786 0.87521 0.82532 0.91015 0.87359 0.93057 0.89017 0.91386 0.85979 0.87208 0.90377 0.87333 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 14.31 66.66 0.95 0.35 16 2 C -0.22 -3.59 10.15 23.40 0.24 -3.36 16 3 C 0.48 12.42 7.91 70.10 0.55 12.97 16 4 O -0.55 -16.61 16.01 19.73 0.32 -16.30 16 5 O -0.35 -9.79 9.32 -54.46 -0.51 -10.30 16 6 C 0.08 2.14 5.34 71.98 0.38 2.52 16 7 C 0.08 2.54 2.64 30.59 0.08 2.62 16 8 H 0.09 2.78 6.36 -2.39 -0.02 2.76 16 9 C -0.17 -4.81 8.94 71.98 0.64 -4.17 16 10 O -0.33 -12.94 9.76 -86.56 -0.85 -13.79 16 11 C 0.01 0.23 6.61 22.79 0.15 0.38 16 12 C -0.18 -8.10 8.11 22.11 0.18 -7.92 16 13 C -0.15 -7.93 8.62 22.48 0.19 -7.74 16 14 C 0.05 2.86 5.57 -21.28 -0.12 2.74 16 15 C -0.50 -27.18 9.05 23.40 0.21 -26.96 16 16 H 0.07 3.90 7.88 -2.91 -0.02 3.87 16 17 C 0.03 1.59 5.22 85.23 0.44 2.04 16 18 N -0.84 -44.04 10.81 21.82 0.24 -43.81 16 19 Si 0.98 38.63 29.58 68.60 2.03 40.66 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.20 -10.14 9.74 22.48 0.22 -9.92 16 24 C -0.12 -5.79 9.92 22.11 0.22 -5.57 16 25 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 26 H 0.11 1.38 7.49 -2.91 -0.02 1.36 16 27 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 1.66 6.77 -2.39 -0.02 1.64 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.95 7.55 -2.39 -0.02 1.93 16 33 H 0.12 4.87 5.35 -2.91 -0.02 4.85 16 34 H 0.11 6.02 6.13 -2.91 -0.02 6.00 16 35 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 36 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 37 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -66.11 321.43 6.66 -59.46 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 1.07 Total: 26.08 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 4.36 Total: -42.01 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.24 Total: -43.81 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.04 Total: -40.38 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -66.11 6.66 -59.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.270 kcal (2) G-P(sol) polarization free energy of solvation -66.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds