Wall clock time and date at job start Mon Mar 30 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.76208 * 2 1 4 4 C 1.54367 * 110.70019 * 236.81118 * 2 1 3 5 5 O 1.45938 * 105.07142 * 259.43227 * 4 2 1 6 6 C 1.34573 * 108.40299 * 327.55623 * 5 4 2 7 7 O 1.20822 * 125.94831 * 213.37522 * 6 5 4 8 8 C 1.51506 * 108.10540 * 33.33817 * 6 5 4 9 9 H 1.09005 * 110.50183 * 220.78267 * 8 6 5 10 10 O 1.42898 * 110.40498 * 98.40732 * 8 6 5 11 11 C 1.35637 * 117.00147 * 87.78523 * 10 8 6 12 12 C 1.38457 * 120.26409 * 355.27860 * 11 10 8 13 13 C 1.38299 * 120.04778 * 180.02562 * 12 11 10 14 14 C 1.38826 * 120.59566 * 359.97438 * 13 12 11 15 15 C 1.36486 * 120.53576 * 359.73525 * 14 13 12 16 16 C 1.40726 * 119.93010 * 0.51940 * 15 14 13 17 17 C 1.41148 * 120.28927 * 179.76011 * 16 15 14 18 18 H 1.08001 * 119.99829 * 208.68324 * 17 16 15 19 19 C 1.39941 * 119.99957 * 28.68413 * 17 16 15 20 20 N 1.30865 * 119.99967 * 11.20657 * 19 17 16 21 21 Si 1.86802 * 119.99818 * 191.20589 * 19 17 16 22 22 H 1.48502 * 109.46981 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47182 * 299.99997 * 21 19 17 24 24 H 1.48493 * 109.47182 * 60.00071 * 21 19 17 25 25 H 1.08999 * 109.46887 * 296.81329 * 1 2 3 26 26 H 1.08995 * 109.47099 * 56.81054 * 1 2 3 27 27 H 1.09004 * 109.47054 * 176.81814 * 1 2 3 28 28 H 1.08999 * 109.47495 * 183.19250 * 3 2 1 29 29 H 1.09002 * 109.46964 * 303.19132 * 3 2 1 30 30 H 1.09001 * 109.47406 * 63.18442 * 3 2 1 31 31 H 1.09002 * 110.32024 * 18.32912 * 4 2 1 32 32 H 1.09000 * 110.32186 * 140.43032 * 4 2 1 33 33 H 1.07992 * 119.97126 * 0.04302 * 12 11 10 34 34 H 1.07999 * 119.70406 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.72673 * 180.02562 * 14 13 12 36 36 H 1.08004 * 120.03315 * 180.26183 * 15 14 13 37 37 H 0.96993 * 119.99713 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0757 -0.7905 -1.2085 5 8 2.4515 -2.0941 -0.6708 6 6 2.8712 -1.9259 0.5967 7 8 3.7325 -2.5677 1.1498 8 6 2.0761 -0.7910 1.2093 9 1 2.7216 -0.1574 1.8176 10 8 0.9994 -1.3047 1.9959 11 6 1.2670 -1.5899 3.2946 12 6 2.5576 -1.4752 3.7826 13 6 2.8256 -1.7677 5.1075 14 6 1.8095 -2.1772 5.9602 15 6 0.5276 -2.2928 5.5061 16 6 0.2307 -2.0061 4.1607 17 6 -1.0914 -2.1280 3.6818 18 1 -1.2698 -2.3680 2.6440 19 6 -2.1710 -1.9379 4.5517 20 7 -1.9704 -1.4363 5.7436 21 14 -3.8984 -2.4002 4.0113 22 1 -4.8559 -2.1024 5.1067 23 1 -4.2666 -1.6153 2.8056 24 1 -3.9459 -3.8496 3.6920 25 1 -0.3633 0.4636 0.9172 26 1 -0.3633 0.5625 -0.8600 27 1 -0.3633 -1.0261 -0.0570 28 1 3.1606 1.4067 -0.0572 29 1 1.6751 1.9698 -0.8600 30 1 1.7677 1.9348 0.9171 31 1 1.3018 -0.9030 -1.9678 32 1 2.9465 -0.2869 -1.6282 33 1 3.3555 -1.1568 3.1282 34 1 3.8344 -1.6767 5.4822 35 1 2.0344 -2.4016 6.9924 36 1 -0.2574 -2.6081 6.1776 37 1 -2.7188 -1.3042 6.3463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230271980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:59 Heat of formation + Delta-G solvation = -95.018853 kcal Electronic energy + Delta-G solvation = -22040.194271 eV Core-core repulsion = 18748.048420 eV Total energy + Delta-G solvation = -3292.145852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21170 -38.46655 -37.55288 -36.23834 -34.61898 -33.58586 -29.84874 -28.78466 -27.72787 -27.20025 -26.60996 -25.10591 -21.92254 -20.96096 -20.29526 -19.71510 -17.56424 -17.03063 -16.90397 -16.51440 -15.96084 -15.10354 -14.60366 -14.26892 -14.16930 -13.76204 -13.72714 -13.30291 -12.95952 -12.66923 -12.57511 -12.37269 -11.99501 -11.81709 -11.47683 -11.32753 -11.16189 -11.06798 -11.00463 -10.80750 -10.55600 -10.45370 -10.41102 -9.76587 -9.48887 -9.45041 -9.19583 -7.44332 -7.04044 -6.66607 -4.28404 2.03844 2.76994 2.94640 3.08766 3.12354 3.21554 3.34022 3.94367 3.97116 4.09495 4.27593 4.63718 4.67698 4.84086 5.16588 5.22917 5.30251 5.41251 5.60098 5.64181 5.78100 5.93109 5.96680 6.13549 6.19575 6.30539 6.44462 6.59102 6.73562 6.91930 7.10724 7.27910 7.35103 7.58557 7.71593 7.74816 8.05815 8.20012 8.32630 8.67386 8.86036 9.01160 10.25932 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.007136 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.319887 B = 3923.019081 C = 4941.778614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.095 4.095 3 C -0.138 4.138 4 C 0.062 3.938 5 O -0.349 6.349 6 C 0.466 3.534 7 O -0.433 6.433 8 C 0.037 3.963 9 H 0.105 0.895 10 O -0.266 6.266 11 C -0.009 4.009 12 C -0.163 4.163 13 C -0.208 4.208 14 C -0.125 4.125 15 C -0.139 4.139 16 C 0.105 3.895 17 C -0.448 4.448 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.805 5.805 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.266 1.266 24 H -0.265 1.265 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 5.795 -10.279 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 C -0.196 4.196 4 C -0.012 4.012 5 O -0.267 6.267 6 C 0.304 3.696 7 O -0.313 6.313 8 C -0.024 4.024 9 H 0.123 0.877 10 O -0.180 6.180 11 C -0.053 4.053 12 C -0.182 4.182 13 C -0.227 4.227 14 C -0.144 4.144 15 C -0.158 4.158 16 C 0.103 3.897 17 C -0.478 4.478 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.432 5.432 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.190 1.190 24 H -0.189 1.189 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.142 5.337 -10.007 11.769 hybrid contribution -0.482 -0.041 -0.016 0.484 sum 2.659 5.296 -10.023 11.644 Atomic orbital electron populations 1.21588 0.90759 1.03444 1.02512 1.21929 0.99469 0.95672 0.92474 1.21859 1.00639 0.93564 1.03503 1.24228 1.00862 0.79987 0.96127 1.87264 1.77707 1.32022 1.29674 1.24065 0.79943 0.84027 0.81595 1.90694 1.26958 1.48621 1.65022 1.23429 0.91125 0.93901 0.93905 0.87728 1.86173 1.31151 1.80139 1.20562 1.19288 0.94499 1.08572 0.82903 1.20664 0.94288 1.06569 0.96705 1.20170 0.97489 1.11379 0.93711 1.20442 0.93943 1.02350 0.97665 1.20944 0.95109 1.03671 0.96113 1.17008 0.91229 0.91143 0.90350 1.19342 0.89764 1.41693 0.96983 0.90228 1.25863 1.01439 0.92704 0.94365 1.69794 1.33793 1.32373 1.07205 0.86328 0.80918 0.80158 0.79062 1.20448 1.19037 1.18950 0.90567 0.92627 0.91243 0.92256 0.91238 0.91003 0.86949 0.89814 0.88464 0.89178 0.89173 0.85547 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 7.52 37.16 0.28 -1.41 16 2 C -0.10 -1.21 1.09 -153.02 -0.17 -1.37 16 3 C -0.14 -1.34 8.31 37.16 0.31 -1.03 16 4 C 0.06 0.69 7.04 37.87 0.27 0.96 16 5 O -0.35 -5.72 11.17 -39.76 -0.44 -6.16 16 6 C 0.47 8.74 7.94 36.40 0.29 9.03 16 7 O -0.43 -9.41 16.87 -18.31 -0.31 -9.71 16 8 C 0.04 0.64 2.53 -26.72 -0.07 0.57 16 9 H 0.11 1.77 5.91 -51.93 -0.31 1.46 16 10 O -0.27 -5.88 7.47 -18.61 -0.14 -6.02 16 11 C -0.01 -0.23 6.67 -38.33 -0.26 -0.48 16 12 C -0.16 -3.86 8.55 -39.48 -0.34 -4.19 16 13 C -0.21 -4.85 10.04 -39.34 -0.39 -5.25 16 14 C -0.13 -3.01 9.97 -40.00 -0.40 -3.41 16 15 C -0.14 -3.65 8.60 -39.27 -0.34 -3.99 16 16 C 0.11 2.85 5.56 -106.68 -0.59 2.25 16 17 C -0.45 -11.95 8.69 -37.84 -0.33 -12.28 16 18 H 0.08 2.10 7.70 -52.49 -0.40 1.69 16 19 C 0.07 1.81 5.24 -17.33 -0.09 1.72 16 20 N -0.80 -20.74 10.86 55.55 0.60 -20.14 16 21 Si 0.91 18.88 29.57 -169.99 -5.03 13.85 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 25 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.06 7.92 -51.93 -0.41 0.64 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 0.98 7.82 -51.93 -0.41 0.58 16 32 H 0.08 0.70 7.77 -51.93 -0.40 0.30 16 33 H 0.10 2.10 5.23 -52.49 -0.27 1.83 16 34 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.13 3.39 6.23 -52.48 -0.33 3.06 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 LS Contribution 308.44 15.07 4.65 4.65 Total: -1.00 -30.43 308.44 -7.11 -37.53 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.61 Total: 4.86 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.83 Total: -18.87 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.60 Total: -20.14 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.89 Total: -21.89 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.43 -7.11 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230271980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.485 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds