Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.46993 * 2 1 4 4 C 1.46908 * 110.99696 * 298.43750 * 3 2 1 5 5 C 1.50694 * 109.47338 * 293.95633 * 4 3 2 6 6 H 1.08005 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99878 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47170 * 60.00165 * 9 7 5 11 11 H 1.48505 * 109.46681 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46973 * 300.00186 * 9 7 5 13 13 C 1.46891 * 111.00300 * 62.39528 * 3 2 1 14 14 C 1.50701 * 109.47267 * 71.52913 * 13 3 2 15 15 C 1.31792 * 124.27886 * 84.52040 * 14 13 3 16 16 C 1.45291 * 114.83128 * 180.02562 * 15 14 13 17 17 C 1.41239 * 129.61855 * 179.97438 * 16 15 14 18 18 C 1.37691 * 118.70830 * 180.02562 * 17 16 15 19 19 C 1.38678 * 119.47978 * 0.02562 * 18 17 16 20 20 N 1.31275 * 121.07637 * 359.97438 * 19 18 17 21 21 C 1.33428 * 122.13894 * 359.97438 * 20 19 18 22 22 S 1.75286 * 124.27468 * 264.22875 * 14 13 3 23 23 H 1.08999 * 109.47352 * 178.46546 * 1 2 3 24 24 H 1.09002 * 109.47112 * 298.46258 * 1 2 3 25 25 H 1.09000 * 109.47498 * 58.46165 * 1 2 3 26 26 H 1.08999 * 109.46720 * 239.99412 * 2 1 3 27 27 H 1.08996 * 109.46613 * 119.99550 * 2 1 3 28 28 H 1.08999 * 109.46975 * 53.95928 * 4 3 2 29 29 H 1.09000 * 109.46797 * 173.95322 * 4 3 2 30 30 H 0.97005 * 120.00201 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47280 * 191.52932 * 13 3 2 32 32 H 1.09005 * 109.47466 * 311.52690 * 13 3 2 33 33 H 1.08001 * 122.58578 * 0.02762 * 15 14 13 34 34 H 1.08002 * 120.64091 * 359.97438 * 17 16 15 35 35 H 1.07998 * 120.25671 * 179.97438 * 18 17 16 36 36 H 1.07995 * 119.46317 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5793 2.0990 -1.2060 5 6 2.2328 1.4876 -2.4185 6 1 2.9075 0.6519 -2.3047 7 6 1.9687 1.9945 -3.6732 8 7 1.1468 3.0117 -3.8118 9 14 2.7782 1.2362 -5.1763 10 1 2.3914 -0.1938 -5.2783 11 1 2.3331 1.9581 -6.3953 12 1 4.2540 1.3420 -5.0499 13 6 1.5960 2.0932 1.2152 14 6 2.3665 1.5660 2.3982 15 6 3.5645 1.9870 2.7511 16 6 4.1183 1.3362 3.9262 17 6 5.3596 1.5408 4.5682 18 6 5.6600 0.7892 5.6820 19 6 4.7437 -0.1440 6.1430 20 7 3.5940 -0.3224 5.5351 21 6 3.2474 0.3767 4.4528 22 16 1.7795 0.3207 3.4831 23 1 -0.3634 -1.0273 -0.0275 24 1 -0.3633 0.4898 0.9035 25 1 -0.3634 0.5375 -0.8758 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 0.4961 2.0213 -1.2991 29 1 1.8631 3.1487 -1.1307 30 1 0.9612 3.3686 -4.6946 31 1 1.7906 3.1596 1.1008 32 1 0.5297 1.9336 1.3758 33 1 4.0938 2.7564 2.2087 34 1 6.0598 2.2721 4.1921 35 1 6.6022 0.9249 6.1921 36 1 4.9797 -0.7337 7.0165 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233348113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = 57.555066 kcal Electronic energy + Delta-G solvation = -18433.509916 eV Core-core repulsion = 15623.025788 eV Total energy + Delta-G solvation = -2810.484128 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19466 -37.74131 -35.46686 -32.66276 -32.31837 -30.67968 -29.24427 -27.22952 -25.06345 -24.21203 -23.31475 -22.47951 -20.63499 -19.30032 -17.92442 -16.47689 -16.14110 -16.12157 -15.21888 -15.13394 -14.85056 -14.41332 -14.06477 -13.80554 -13.20450 -13.09455 -12.80809 -12.41999 -11.98240 -11.80244 -11.61711 -11.45295 -11.17415 -10.89827 -10.79916 -10.63427 -10.57418 -10.33646 -10.06774 -9.82738 -9.51649 -9.27840 -8.57782 -8.44787 -7.88273 -7.28523 -6.05542 -4.06506 0.59980 0.99387 1.33313 2.05004 2.35786 3.32151 3.36249 3.39403 3.64453 4.34964 4.41204 4.56766 4.70755 4.87176 4.99749 5.10375 5.29484 5.32344 5.51875 5.59241 5.73878 5.77089 5.91447 5.99157 6.01639 6.11275 6.22776 6.38424 6.45718 6.51176 6.64546 6.87137 7.22992 7.36204 7.68494 7.75226 8.02054 8.13307 8.48328 9.00369 9.57566 11.05183 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.004120 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.884352 B = 6794.285058 C = 7203.130652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.110 3.890 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.037 4.037 18 C -0.180 4.180 19 C 0.121 3.879 20 N -0.459 5.459 21 C 0.048 3.952 22 S 0.130 5.870 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.002 0.998 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -2.992 17.395 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.073 4.073 3 N -0.251 5.251 4 C 0.065 3.935 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.020 4.020 14 C -0.239 4.239 15 C -0.144 4.144 16 C -0.126 4.126 17 C -0.064 4.064 18 C -0.203 4.203 19 C -0.049 4.049 20 N -0.169 5.169 21 C -0.196 4.196 22 S 0.393 5.607 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.432 -4.296 17.512 18.355 hybrid contribution 1.472 1.062 -1.221 2.188 sum 4.904 -3.234 16.291 17.317 Atomic orbital electron populations 1.22391 0.99259 1.01366 1.01804 1.22072 0.92233 0.91263 1.01777 1.62386 1.59219 1.02038 1.01443 1.19824 0.94593 0.93865 0.85222 1.21082 1.26709 1.16363 0.90277 0.91947 1.24958 0.95356 0.95126 0.99032 1.69938 1.35777 1.24607 1.23543 0.86574 0.79825 0.79221 0.81888 1.20275 1.21374 1.20191 1.20724 0.95334 0.98674 0.87279 1.24175 0.99253 0.99903 1.00613 1.20675 0.95215 1.02722 0.95742 1.20176 0.96237 0.98545 0.97606 1.21409 0.94122 0.97373 0.93504 1.21911 1.01544 0.98606 0.98206 1.22709 0.88424 0.95624 0.98134 1.67148 1.18906 1.24049 1.06829 1.23691 0.99860 0.97907 0.98143 1.84289 1.14761 1.40630 1.21061 0.93097 0.93890 0.91063 0.89819 0.92698 0.98047 0.95256 0.92859 0.89086 0.93621 0.83176 0.84339 0.84331 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 9.28 37.16 0.34 -3.01 16 2 C 0.06 1.06 5.74 -3.82 -0.02 1.04 16 3 N -0.53 -10.90 4.65 -237.52 -1.10 -12.00 16 4 C 0.19 4.70 4.50 -4.97 -0.02 4.67 16 5 C -0.51 -13.78 8.49 -34.44 -0.29 -14.07 16 6 H 0.06 1.70 7.11 -52.48 -0.37 1.33 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.11 1.90 5.26 -4.98 -0.03 1.88 16 14 C -0.12 -1.93 5.19 -36.20 -0.19 -2.12 16 15 C -0.11 -1.69 10.21 -38.67 -0.40 -2.08 16 16 C -0.11 -1.62 6.06 -105.35 -0.64 -2.25 16 17 C -0.04 -0.41 10.22 -38.64 -0.39 -0.80 16 18 C -0.18 -1.69 10.07 -39.62 -0.40 -2.09 16 19 C 0.12 1.29 11.17 -17.63 -0.20 1.10 16 20 N -0.46 -6.59 10.38 -11.77 -0.12 -6.71 16 21 C 0.05 0.73 7.65 -16.25 -0.12 0.60 16 22 S 0.13 1.95 22.20 -107.50 -2.39 -0.44 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.70 6.30 -51.93 -0.33 0.37 16 25 H 0.07 1.44 6.23 -51.93 -0.32 1.12 16 26 H 0.08 1.76 6.82 -51.93 -0.35 1.40 16 27 H 0.05 0.98 6.51 -51.93 -0.34 0.64 16 28 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 29 H 0.03 0.78 7.87 -51.93 -0.41 0.37 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 31 H 0.09 1.53 7.82 -51.93 -0.41 1.13 16 32 H 0.05 0.77 5.90 -51.93 -0.31 0.46 16 33 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -30.39 309.93 -10.08 -40.47 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.40 Total: -1.31 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.45 Total: -15.67 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.49 Total: -44.06 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.39 Total: -0.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.39 -10.08 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233348113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.023 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds