Wall clock time and date at job start Mon Mar 30 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.46993 * 2 1 4 4 C 1.46908 * 110.99696 * 298.43750 * 3 2 1 5 5 C 1.50694 * 109.47338 * 293.95633 * 4 3 2 6 6 H 1.08005 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99878 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47170 * 60.00165 * 9 7 5 11 11 H 1.48505 * 109.46681 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46973 * 300.00186 * 9 7 5 13 13 C 1.46891 * 111.00300 * 62.39528 * 3 2 1 14 14 C 1.50701 * 109.47267 * 71.52913 * 13 3 2 15 15 C 1.31792 * 124.27886 * 84.52040 * 14 13 3 16 16 C 1.45291 * 114.83128 * 180.02562 * 15 14 13 17 17 C 1.41239 * 129.61855 * 179.97438 * 16 15 14 18 18 C 1.37691 * 118.70830 * 180.02562 * 17 16 15 19 19 C 1.38678 * 119.47978 * 0.02562 * 18 17 16 20 20 N 1.31275 * 121.07637 * 359.97438 * 19 18 17 21 21 C 1.33428 * 122.13894 * 359.97438 * 20 19 18 22 22 S 1.75286 * 124.27468 * 264.22875 * 14 13 3 23 23 H 1.08999 * 109.47352 * 178.46546 * 1 2 3 24 24 H 1.09002 * 109.47112 * 298.46258 * 1 2 3 25 25 H 1.09000 * 109.47498 * 58.46165 * 1 2 3 26 26 H 1.08999 * 109.46720 * 239.99412 * 2 1 3 27 27 H 1.08996 * 109.46613 * 119.99550 * 2 1 3 28 28 H 1.08999 * 109.46975 * 53.95928 * 4 3 2 29 29 H 1.09000 * 109.46797 * 173.95322 * 4 3 2 30 30 H 0.97005 * 120.00201 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47280 * 191.52932 * 13 3 2 32 32 H 1.09005 * 109.47466 * 311.52690 * 13 3 2 33 33 H 1.08001 * 122.58578 * 0.02762 * 15 14 13 34 34 H 1.08002 * 120.64091 * 359.97438 * 17 16 15 35 35 H 1.07998 * 120.25671 * 179.97438 * 18 17 16 36 36 H 1.07995 * 119.46317 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5793 2.0990 -1.2060 5 6 2.2328 1.4876 -2.4185 6 1 2.9075 0.6519 -2.3047 7 6 1.9687 1.9945 -3.6732 8 7 1.1468 3.0117 -3.8118 9 14 2.7782 1.2362 -5.1763 10 1 2.3914 -0.1938 -5.2783 11 1 2.3331 1.9581 -6.3953 12 1 4.2540 1.3420 -5.0499 13 6 1.5960 2.0932 1.2152 14 6 2.3665 1.5660 2.3982 15 6 3.5645 1.9870 2.7511 16 6 4.1183 1.3362 3.9262 17 6 5.3596 1.5408 4.5682 18 6 5.6600 0.7892 5.6820 19 6 4.7437 -0.1440 6.1430 20 7 3.5940 -0.3224 5.5351 21 6 3.2474 0.3767 4.4528 22 16 1.7795 0.3207 3.4831 23 1 -0.3634 -1.0273 -0.0275 24 1 -0.3633 0.4898 0.9035 25 1 -0.3634 0.5375 -0.8758 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 0.4961 2.0213 -1.2991 29 1 1.8631 3.1487 -1.1307 30 1 0.9612 3.3686 -4.6946 31 1 1.7906 3.1596 1.1008 32 1 0.5297 1.9336 1.3758 33 1 4.0938 2.7564 2.2087 34 1 6.0598 2.2721 4.1921 35 1 6.6022 0.9249 6.1921 36 1 4.9797 -0.7337 7.0165 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233348113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:40 Heat of formation + Delta-G solvation = 38.774451 kcal Electronic energy + Delta-G solvation = -18434.324305 eV Core-core repulsion = 15623.025788 eV Total energy + Delta-G solvation = -2811.298517 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13618 -39.27919 -36.65793 -34.70653 -33.21475 -31.90163 -30.88526 -28.82359 -26.57473 -25.21028 -25.00957 -23.66028 -21.95199 -20.73575 -18.93682 -18.33846 -17.32085 -17.30076 -16.85189 -16.43499 -16.09929 -15.88281 -15.36973 -15.08304 -14.68924 -14.29155 -14.05424 -13.71382 -13.43171 -13.23338 -13.14176 -12.94009 -12.70715 -12.56639 -12.46942 -12.26784 -11.93950 -11.83500 -11.53045 -11.28648 -11.19913 -10.57945 -10.44889 -9.63330 -9.00261 -8.94730 -8.17893 -6.26401 -0.39485 0.11193 0.25999 0.93741 1.27139 1.42188 1.44179 1.52096 2.41880 2.73666 3.15084 3.32138 3.48312 3.65601 3.79651 4.04189 4.14386 4.15330 4.27061 4.40947 4.44541 4.57625 4.61108 4.65299 4.88347 4.92286 4.99077 5.08039 5.15554 5.20467 5.34989 5.37093 5.48012 5.65371 5.67604 6.06681 6.32358 6.60079 6.77961 6.88372 7.42385 8.92522 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.004120 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.884352 B = 6794.285058 C = 7203.130652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.534 5.534 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.116 3.884 14 C -0.144 4.144 15 C -0.106 4.106 16 C -0.136 4.136 17 C -0.040 4.040 18 C -0.164 4.164 19 C 0.122 3.878 20 N -0.491 5.491 21 C 0.028 3.972 22 S 0.119 5.881 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.072 0.928 28 H -0.017 1.017 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -3.860 19.055 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.258 5.258 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.195 1.195 13 C -0.014 4.014 14 C -0.260 4.260 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.067 4.067 18 C -0.186 4.186 19 C -0.047 4.047 20 N -0.203 5.203 21 C -0.215 4.215 22 S 0.381 5.619 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.000 1.000 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.584 -5.174 19.192 20.646 hybrid contribution 0.933 1.310 -1.520 2.213 sum 6.517 -3.864 17.671 19.227 Atomic orbital electron populations 1.22273 0.98101 1.02480 1.00975 1.22029 0.93189 0.90335 1.01471 1.62252 1.59632 1.02606 1.01301 1.19457 0.93118 0.92815 0.86688 1.21381 1.26608 1.16249 0.91491 0.92332 1.25792 0.95864 0.95511 1.02050 1.70058 1.37089 1.25912 1.24270 0.85538 0.78954 0.78577 0.78167 1.19484 1.20906 1.19527 1.20622 0.95866 0.98361 0.86529 1.23865 0.99897 1.01473 1.00784 1.20877 0.94770 1.02170 0.95811 1.20339 0.97676 0.98883 0.97798 1.21860 0.93235 0.97967 0.93686 1.22416 1.02607 0.96582 0.97021 1.23503 0.87280 0.95547 0.98339 1.67170 1.20905 1.24973 1.07207 1.23731 0.99850 0.98931 0.99017 1.84103 1.15762 1.40573 1.21480 0.90859 0.92577 0.94029 0.91933 0.91001 0.99987 0.97614 0.92758 0.89285 0.93294 0.82599 0.81681 0.79905 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.44 9.28 71.98 0.67 -5.77 16 2 C 0.06 2.27 5.74 86.30 0.50 2.76 16 3 N -0.53 -22.70 4.65 -905.38 -4.21 -26.91 16 4 C 0.21 10.58 4.50 85.55 0.39 10.96 16 5 C -0.52 -28.96 8.49 25.60 0.22 -28.74 16 6 H 0.06 3.25 7.11 -2.91 -0.02 3.23 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 9 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.12 4.11 5.26 85.56 0.45 4.56 16 14 C -0.14 -4.56 5.19 24.93 0.13 -4.43 16 15 C -0.11 -3.10 10.21 23.32 0.24 -2.87 16 16 C -0.14 -3.65 6.06 -20.33 -0.12 -3.77 16 17 C -0.04 -0.76 10.22 22.88 0.23 -0.53 16 18 C -0.16 -2.35 10.07 22.25 0.22 -2.12 16 19 C 0.12 2.18 11.17 84.88 0.95 3.13 16 20 N -0.49 -13.22 10.38 -191.14 -1.98 -15.20 16 21 C 0.03 0.82 7.65 84.85 0.65 1.46 16 22 S 0.12 3.56 22.20 -56.49 -1.25 2.30 16 23 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.06 1.84 6.30 -2.39 -0.02 1.82 16 25 H 0.04 1.73 6.23 -2.39 -0.01 1.72 16 26 H 0.06 2.68 6.82 -2.39 -0.02 2.67 16 27 H 0.07 2.57 6.51 -2.39 -0.02 2.55 16 28 H -0.02 -0.96 6.02 -2.39 -0.01 -0.97 16 29 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16 30 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 31 H 0.09 3.12 7.82 -2.39 -0.02 3.11 16 32 H 0.05 1.69 5.90 -2.38 -0.01 1.67 16 33 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.20 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.23 309.93 0.93 -66.31 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.09 Total: 6.95 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.98 Total: -24.55 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -5.91 Total: -97.12 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.25 Total: 2.30 kcal Total: -67.23 0.93 -66.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233348113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.080 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds