Wall clock time and date at job start Mon Mar 30 2020 01:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86803 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47063 * 270.00211 * 3 2 1 5 5 H 1.48499 * 109.47153 * 30.00339 * 3 2 1 6 6 H 1.48497 * 109.46956 * 150.00272 * 3 2 1 7 7 C 1.40346 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.41762 * 120.00012 * 359.97438 * 7 2 1 10 10 O 1.21826 * 119.99856 * 0.02562 * 9 7 2 11 11 C 1.47562 * 120.00103 * 180.02562 * 9 7 2 12 12 C 1.39950 * 120.09400 * 180.02562 * 11 9 7 13 13 C 1.37121 * 119.90488 * 180.02562 * 12 11 9 14 14 C 1.39159 * 120.09627 * 359.97438 * 13 12 11 15 15 O 1.35656 * 119.90748 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99903 * 185.36136 * 15 14 13 17 17 C 1.53181 * 109.54151 * 155.48268 * 16 15 14 18 18 C 1.53090 * 109.16289 * 176.84443 * 17 16 15 19 19 O 1.42895 * 109.41553 * 302.39423 * 18 17 16 20 20 C 1.42898 * 114.10078 * 61.15684 * 19 18 17 21 21 C 1.53097 * 109.41446 * 298.84086 * 20 19 18 22 22 C 1.39168 * 120.18644 * 0.25856 * 14 13 12 23 23 C 1.37120 * 120.09357 * 359.48663 * 22 14 13 24 24 H 0.97008 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.04912 * 359.97438 * 12 11 9 26 26 H 1.07999 * 119.95115 * 179.97438 * 13 12 11 27 27 H 1.08993 * 109.61332 * 35.26289 * 16 15 14 28 28 H 1.09005 * 109.52064 * 56.94217 * 17 16 15 29 29 H 1.09001 * 109.52460 * 296.75910 * 17 16 15 30 30 H 1.09000 * 109.47965 * 62.37935 * 18 17 16 31 31 H 1.08999 * 109.47882 * 182.39536 * 18 17 16 32 32 H 1.09007 * 109.48309 * 58.82422 * 20 19 18 33 33 H 1.09003 * 109.48470 * 178.86066 * 20 19 18 34 34 H 1.09005 * 109.51801 * 177.51102 * 21 20 19 35 35 H 1.08999 * 109.52232 * 297.69752 * 21 20 19 36 36 H 1.07996 * 119.95239 * 179.71919 * 22 14 13 37 37 H 1.07998 * 120.04437 * 180.25463 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4368 2.6527 0.7001 6 1 3.5368 1.4401 0.7000 7 6 2.0070 -1.2154 -0.0005 8 1 3.0870 -1.2154 -0.0010 9 6 1.2982 -2.4431 -0.0005 10 8 0.0799 -2.4431 -0.0005 11 6 2.0360 -3.7211 -0.0005 12 6 1.3382 -4.9342 -0.0011 13 6 2.0277 -6.1194 -0.0006 14 6 3.4193 -6.1172 0.0000 15 8 4.0976 -7.2920 0.0010 16 6 5.5199 -7.2199 0.1205 17 6 6.0521 -8.5320 0.7050 18 6 7.5811 -8.4757 0.7558 19 8 8.0917 -8.2396 -0.5578 20 6 7.6655 -7.0043 -1.1361 21 6 6.1398 -7.0014 -1.2630 22 6 4.1172 -4.9131 0.0054 23 6 3.4355 -3.7234 -0.0004 24 1 -0.4851 0.8401 0.0004 25 1 0.2582 -4.9369 -0.0011 26 1 1.4900 -7.0560 -0.0006 27 1 5.7904 -6.3924 0.7762 28 1 5.7390 -9.3648 0.0752 29 1 5.6588 -8.6681 1.7124 30 1 7.8934 -7.6681 1.4178 31 1 7.9674 -9.4233 1.1312 32 1 7.9788 -6.1773 -0.4988 33 1 8.1126 -6.8919 -2.1239 34 1 5.8094 -6.0427 -1.6629 35 1 5.8285 -7.8032 -1.9325 36 1 5.1971 -4.9158 0.0104 37 1 3.9778 -2.7894 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233516324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:05 Heat of formation + Delta-G solvation = -107.296891 kcal Electronic energy + Delta-G solvation = -20726.861143 eV Core-core repulsion = 17434.182875 eV Total energy + Delta-G solvation = -3292.678268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40376 -38.90616 -37.45095 -35.73746 -32.93746 -32.70439 -31.49240 -30.54922 -29.39850 -26.73658 -25.03404 -23.94490 -22.50377 -22.08811 -20.48272 -19.54549 -18.03598 -16.70495 -16.67161 -16.34729 -15.60725 -15.30957 -15.26780 -14.69617 -14.37359 -14.17981 -13.55946 -13.39643 -13.11076 -12.96385 -12.66648 -12.57679 -12.26780 -11.73728 -11.60928 -11.53851 -11.28365 -11.25354 -10.97375 -10.69887 -10.59076 -10.37856 -10.26570 -10.06304 -9.86341 -9.00233 -8.48332 -7.50650 -7.48570 -6.33046 -4.93483 1.81150 1.98962 3.02470 3.10237 3.13283 3.23272 3.57995 3.97759 4.00157 4.42894 4.47685 4.62729 4.65117 4.78251 4.89225 5.06365 5.15022 5.30897 5.34419 5.35663 5.37177 5.52579 5.70045 5.78401 5.78991 5.87902 5.93652 6.09693 6.11327 6.30019 6.60995 6.81310 6.85276 7.02499 7.21754 7.32802 7.35797 7.81320 8.00118 8.76258 8.81592 10.28631 10.50715 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.003805 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.032484 B = 7356.924936 C = 8160.427145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.389 3.611 10 O -0.543 6.543 11 C -0.136 4.136 12 C -0.056 4.056 13 C -0.162 4.162 14 C 0.111 3.889 15 O -0.312 6.312 16 C 0.086 3.914 17 C -0.152 4.152 18 C 0.065 3.935 19 O -0.383 6.383 20 C 0.064 3.936 21 C -0.184 4.184 22 C -0.222 4.222 23 C -0.057 4.057 24 H 0.274 0.726 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 -11.984 0.535 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.549 4.549 8 H 0.091 0.909 9 C 0.285 3.715 10 O -0.433 6.433 11 C -0.138 4.138 12 C -0.074 4.074 13 C -0.181 4.181 14 C 0.067 3.933 15 O -0.226 6.226 16 C 0.029 3.971 17 C -0.189 4.189 18 C -0.012 4.012 19 O -0.301 6.301 20 C -0.013 4.013 21 C -0.221 4.221 22 C -0.241 4.241 23 C -0.075 4.075 24 H 0.085 0.915 25 H 0.150 0.850 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.826 -12.262 0.430 18.485 hybrid contribution 0.507 1.143 0.118 1.256 sum 14.333 -11.119 0.548 18.149 Atomic orbital electron populations 1.69958 1.07549 1.28111 1.30721 1.26009 0.94643 1.01006 0.92740 0.86380 0.80449 0.80966 0.79206 1.19369 1.20119 1.18539 1.20928 0.94875 0.91674 1.47418 0.90858 1.18068 0.88443 0.85851 0.79159 1.90505 1.15042 1.88543 1.49242 1.21826 0.94059 0.97844 1.00031 1.21119 1.00497 0.90766 0.95057 1.20192 0.90564 0.98816 1.08530 1.19130 0.91645 0.84115 0.98432 1.86004 1.19148 1.29045 1.88400 1.22325 0.79537 0.98721 0.96508 1.22283 0.96350 0.97536 1.02774 1.22572 0.91843 1.02127 0.84641 1.87934 1.71690 1.39633 1.30890 1.22580 0.93116 0.86309 0.99259 1.22820 0.96541 1.04507 0.98273 1.21037 0.99330 0.92516 1.11193 1.21237 0.94183 0.97069 0.95001 0.91467 0.85026 0.86079 0.90738 0.89888 0.89873 0.92813 0.88107 0.92820 0.88258 0.89667 0.89909 0.86325 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.08 11.73 55.57 0.65 -20.42 16 2 C 0.08 2.12 5.50 -17.31 -0.10 2.03 16 3 Si 0.91 19.04 29.56 -169.99 -5.03 14.01 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.52 -14.12 8.86 -37.44 -0.33 -14.46 16 8 H 0.07 1.80 6.01 -52.49 -0.32 1.48 16 9 C 0.39 11.01 6.91 -34.44 -0.24 10.77 16 10 O -0.54 -17.30 14.89 5.08 0.08 -17.22 16 11 C -0.14 -3.20 5.89 -104.81 -0.62 -3.82 16 12 C -0.06 -1.20 9.57 -39.35 -0.38 -1.57 16 13 C -0.16 -2.98 9.95 -39.65 -0.39 -3.37 16 14 C 0.11 1.92 6.62 -38.89 -0.26 1.66 16 15 O -0.31 -4.73 9.80 -18.67 -0.18 -4.92 16 16 C 0.09 1.01 2.19 -26.55 -0.06 0.95 16 17 C -0.15 -1.44 5.79 -26.59 -0.15 -1.60 16 18 C 0.07 0.53 6.84 37.20 0.25 0.79 16 19 O -0.38 -3.92 10.76 -35.23 -0.38 -4.30 16 20 C 0.06 0.58 6.84 37.21 0.25 0.84 16 21 C -0.18 -1.97 5.42 -26.59 -0.14 -2.11 16 22 C -0.22 -3.78 8.24 -39.64 -0.33 -4.10 16 23 C -0.06 -1.13 9.41 -39.35 -0.37 -1.50 16 24 H 0.27 7.03 8.29 -40.82 -0.34 6.70 16 25 H 0.13 2.85 7.65 -52.48 -0.40 2.45 16 26 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.96 6.90 -51.93 -0.36 0.60 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 1.66 5.38 -52.49 -0.28 1.37 16 37 H 0.13 2.50 6.19 -52.49 -0.33 2.18 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -32.81 307.86 -7.60 -40.41 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.53 Total: 3.31 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.85 Total: -15.51 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.65 Total: -20.42 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.49 Total: -26.44 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.81 -7.60 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233516324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.882 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds